Wall clock time and date at job start Tue Mar 31 2020 21:05:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.49034 * 2 1 4 4 C 1.53173 * 109.49519 * 120.05671 * 2 1 3 5 5 C 1.53149 * 109.35628 * 179.18503 * 4 2 1 6 6 N 1.46897 * 109.07736 * 303.59610 * 5 4 2 7 7 C 1.34774 * 120.67461 * 235.30732 * 6 5 4 8 8 O 1.21342 * 120.00481 * 358.82705 * 7 6 5 9 9 C 1.49450 * 119.99681 * 178.82975 * 7 6 5 10 10 O 1.21351 * 119.99969 * 6.55218 * 9 7 6 11 11 N 1.34778 * 119.99976 * 186.56181 * 9 7 6 12 12 C 1.46498 * 119.99872 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.47054 * 179.97438 * 12 11 9 14 14 C 1.52995 * 109.47406 * 300.00413 * 13 12 11 15 15 C 1.53003 * 109.46633 * 60.00194 * 13 12 11 16 16 C 1.50705 * 109.47218 * 179.97438 * 13 12 11 17 17 H 1.08000 * 119.99610 * 0.02562 * 16 13 12 18 18 C 1.37869 * 119.99790 * 180.02562 * 16 13 12 19 19 N 1.31515 * 120.00256 * 0.02562 * 18 16 13 20 20 Si 1.86805 * 119.99747 * 180.02562 * 18 16 13 21 21 H 1.48491 * 109.47418 * 90.00173 * 20 18 16 22 22 H 1.48503 * 109.46822 * 210.00238 * 20 18 16 23 23 H 1.48505 * 109.47096 * 329.99665 * 20 18 16 24 24 C 1.47094 * 118.64148 * 55.28816 * 6 5 4 25 25 C 1.52724 * 109.49571 * 239.94658 * 2 1 3 26 26 C 1.53346 * 113.63299 * 51.43938 * 25 2 1 27 27 C 1.53851 * 86.96730 * 220.08906 * 26 25 2 28 28 C 1.53375 * 113.57856 * 313.44416 * 25 2 1 29 29 H 1.08997 * 109.47289 * 299.99777 * 1 2 3 30 30 H 1.09004 * 109.47247 * 60.00234 * 1 2 3 31 31 H 1.09001 * 109.46645 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.48782 * 299.14930 * 4 2 1 33 33 H 1.08995 * 109.48595 * 59.19183 * 4 2 1 34 34 H 1.09000 * 109.53387 * 63.47337 * 5 4 2 35 35 H 1.08993 * 109.53475 * 183.63801 * 5 4 2 36 36 H 0.96997 * 120.00174 * 359.97438 * 11 9 7 37 37 H 1.08997 * 109.47411 * 299.99543 * 12 11 9 38 38 H 1.09002 * 109.47121 * 59.99834 * 12 11 9 39 39 H 1.08999 * 109.47148 * 59.99521 * 14 13 12 40 40 H 1.09001 * 109.47267 * 180.02562 * 14 13 12 41 41 H 1.09002 * 109.47005 * 299.99702 * 14 13 12 42 42 H 1.08997 * 109.47256 * 60.00201 * 15 13 12 43 43 H 1.09003 * 109.46767 * 180.02562 * 15 13 12 44 44 H 1.08999 * 109.47142 * 300.00001 * 15 13 12 45 45 H 0.97000 * 119.99890 * 180.02562 * 19 18 16 46 46 H 1.09000 * 109.64134 * 68.19528 * 24 6 5 47 47 H 1.09007 * 109.63618 * 188.60017 * 24 6 5 48 48 H 1.08999 * 113.63677 * 334.61492 * 26 25 2 49 49 H 1.09003 * 113.63036 * 105.57395 * 26 25 2 50 50 H 1.09004 * 113.60492 * 270.55814 * 27 26 25 51 51 H 1.09005 * 113.60472 * 139.69440 * 27 26 25 52 52 H 1.09004 * 113.63581 * 254.47646 * 28 25 2 53 53 H 1.08995 * 113.63684 * 25.35701 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0412 -0.7232 1.2498 5 6 3.5725 -0.7391 1.2363 6 7 4.0352 -1.3661 -0.0090 7 6 4.8728 -2.4214 0.0225 8 8 5.2694 -2.8499 1.0862 9 6 5.3133 -3.0640 -1.2529 10 8 5.0145 -2.5656 -2.3182 11 7 6.0423 -4.1971 -1.2199 12 6 6.4737 -4.8273 -2.4701 13 6 7.2801 -6.0885 -2.1538 14 6 8.5079 -5.7135 -1.3216 15 6 6.4080 -7.0666 -1.3640 16 6 7.7233 -6.7371 -3.4399 17 1 7.4568 -6.2939 -4.3880 18 6 8.4689 -7.8963 -3.4060 19 7 8.7930 -8.4363 -2.2515 20 14 9.0189 -8.6999 -5.0002 21 1 10.3416 -8.1552 -5.3986 22 1 9.1271 -10.1678 -4.8029 23 1 8.0249 -8.4158 -6.0664 24 6 3.5653 -0.8187 -1.2909 25 6 2.0397 -0.7210 -1.2461 26 6 1.4194 -0.2067 -2.5508 27 6 1.3592 -1.6753 -3.0054 28 6 1.3332 -2.0556 -1.5148 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6907 -0.2018 2.1405 33 1 1.6664 -1.7467 1.2564 34 1 3.9481 0.2826 1.2914 35 1 3.9386 -1.3088 2.0904 36 1 6.2814 -4.5954 -0.3684 37 1 5.5990 -5.0942 -3.0631 38 1 7.0952 -4.1306 -3.0326 39 1 8.1869 -5.2446 -0.3914 40 1 9.0826 -6.6119 -1.0966 41 1 9.1292 -5.0166 -1.8842 42 1 5.5333 -7.3338 -1.9569 43 1 6.9827 -7.9649 -1.1382 44 1 6.0871 -6.5977 -0.4338 45 1 9.3179 -9.2517 -2.2277 46 1 3.9914 0.1728 -1.4441 47 1 3.8695 -1.4777 -2.1041 48 1 0.4387 0.2502 -2.4181 49 1 2.0968 0.4070 -3.1445 50 1 2.2575 -2.0084 -3.5253 51 1 0.4424 -1.9305 -3.5370 52 1 1.9415 -2.9279 -1.2757 53 1 0.3293 -2.1111 -1.0940 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591559375.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:31 Heat of formation + Delta-G solvation = -56.129691 kcal Electronic energy + Delta-G solvation = -31131.903534 eV Core-core repulsion = 27196.963361 eV Total energy + Delta-G solvation = -3934.940173 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.37042 -40.98067 -39.65475 -38.28896 -36.90891 -35.26682 -34.47417 -32.76870 -30.61407 -29.15930 -27.88173 -27.60810 -27.21819 -26.67172 -25.41334 -24.60573 -23.21900 -21.96766 -21.05734 -20.60425 -19.40919 -18.46682 -18.10625 -17.74119 -17.20478 -16.77833 -16.68679 -16.54694 -16.07261 -15.85695 -15.51367 -15.30028 -14.89917 -14.79905 -14.55072 -14.41380 -14.25384 -14.05239 -13.72137 -13.52225 -13.25352 -13.20999 -13.12457 -12.71463 -12.62780 -12.57851 -12.43917 -12.29829 -12.24677 -12.18838 -12.12706 -11.94302 -11.64306 -11.52456 -11.41801 -11.24796 -10.86982 -10.78447 -10.73140 -10.42312 -10.20201 -10.02469 -9.77842 -8.02165 -6.18919 0.30760 1.29305 1.44209 1.47252 1.55248 2.08881 2.41582 2.52619 3.21897 3.25667 3.56923 3.67621 3.70356 3.96234 4.01023 4.07344 4.15336 4.32667 4.38575 4.43883 4.46042 4.52367 4.65847 4.71059 4.75981 4.77915 4.84720 4.86503 4.89343 4.95584 4.98637 5.01852 5.06333 5.07607 5.11272 5.14799 5.15283 5.16348 5.28695 5.34471 5.41081 5.41776 5.55069 5.58367 5.62915 5.66738 5.69796 5.97992 6.09292 6.17440 6.24760 6.40067 6.69817 6.85235 6.94528 7.49357 8.97207 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.002740 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.121912 B =10217.049007 C =11005.564569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 H 0.082 0.918 4 C -0.121 4.121 5 C 0.100 3.900 6 N -0.568 5.568 7 C 0.506 3.494 8 O -0.550 6.550 9 C 0.499 3.501 10 O -0.530 6.530 11 N -0.679 5.679 12 C 0.144 3.856 13 C 0.052 3.948 14 C -0.125 4.125 15 C -0.124 4.124 16 C -0.526 4.526 17 H 0.053 0.947 18 C 0.026 3.974 19 N -0.902 5.902 20 Si 0.948 3.052 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 C 0.068 3.932 25 C -0.087 4.087 26 C -0.117 4.117 27 C -0.145 4.145 28 C -0.134 4.134 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.099 0.901 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.412 0.588 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.028 0.972 40 H 0.063 0.937 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.027 0.973 45 H 0.260 0.740 46 H 0.077 0.923 47 H 0.142 0.858 48 H 0.106 0.894 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.074 0.926 52 H 0.032 0.968 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.952 18.762 5.282 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.092 4.092 3 H 0.101 0.899 4 C -0.159 4.159 5 C -0.021 4.021 6 N -0.300 5.300 7 C 0.288 3.712 8 O -0.428 6.428 9 C 0.281 3.719 10 O -0.410 6.410 11 N -0.330 5.330 12 C 0.021 3.979 13 C 0.051 3.949 14 C -0.183 4.183 15 C -0.181 4.181 16 C -0.565 4.565 17 H 0.071 0.929 18 C -0.173 4.173 19 N -0.541 5.541 20 Si 0.775 3.225 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.196 1.196 24 C -0.052 4.052 25 C -0.088 4.088 26 C -0.155 4.155 27 C -0.182 4.182 28 C -0.171 4.171 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.117 0.883 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.249 0.751 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.082 0.918 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.159 0.841 48 H 0.124 0.876 49 H 0.088 0.912 50 H 0.082 0.918 51 H 0.093 0.907 52 H 0.051 0.949 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.836 18.709 5.175 25.695 hybrid contribution 0.869 -1.100 -0.413 1.462 sum -15.967 17.609 4.761 24.242 Atomic orbital electron populations 1.21956 0.93814 1.02033 1.02617 1.20973 0.96590 0.99132 0.92533 0.89922 1.21934 0.93047 1.01330 0.99550 1.21928 0.95933 0.98698 0.85532 1.48043 1.43330 1.28791 1.09834 1.20033 0.80706 0.81614 0.88805 1.90725 1.56689 1.63704 1.31730 1.20346 0.79856 0.82055 0.89685 1.90302 1.55634 1.62774 1.32311 1.46118 1.50710 1.24098 1.12044 1.21568 0.97860 0.94741 0.83718 1.18362 0.91796 0.89825 0.94899 1.21718 0.99339 1.00386 0.96828 1.21707 0.98097 1.01536 0.96809 1.21248 1.33793 1.09110 0.92319 0.92907 1.25500 0.95840 0.97319 0.98670 1.69929 1.38460 1.20543 1.25120 0.85709 0.78559 0.77513 0.80727 1.20523 1.21135 1.19645 1.23112 0.93421 1.02074 0.86599 1.21877 0.93425 0.97002 0.96456 1.22923 1.01877 0.95929 0.94741 1.22831 1.01831 0.97497 0.96086 1.23002 1.00917 0.96078 0.97100 0.91635 0.91382 0.92758 0.88271 0.92792 0.89139 0.90033 0.75054 0.92522 0.92533 0.95333 0.91774 0.95714 0.95715 0.91776 0.95399 0.93054 0.90433 0.84122 0.87605 0.91158 0.91774 0.90739 0.94949 0.88343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.41 71.98 0.61 -0.89 16 2 C -0.07 -0.96 2.39 -10.83 -0.03 -0.99 16 3 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 4 C -0.12 -1.77 5.29 30.70 0.16 -1.61 16 5 C 0.10 1.92 6.38 86.35 0.55 2.47 16 6 N -0.57 -14.25 2.98 -820.71 -2.44 -16.69 16 7 C 0.51 16.15 7.76 87.27 0.68 16.82 16 8 O -0.55 -19.66 15.91 -3.22 -0.05 -19.71 16 9 C 0.50 17.41 7.80 87.27 0.68 18.09 16 10 O -0.53 -19.08 13.02 -3.25 -0.04 -19.13 16 11 N -0.68 -25.07 4.95 -464.41 -2.30 -27.36 16 12 C 0.14 5.94 4.50 86.38 0.39 6.33 16 13 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 14 C -0.12 -5.75 8.08 71.98 0.58 -5.16 16 15 C -0.12 -5.67 8.08 71.98 0.58 -5.09 16 16 C -0.53 -27.34 8.01 25.60 0.21 -27.13 16 17 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 18 C 0.03 1.38 5.15 84.65 0.44 1.82 16 19 N -0.90 -48.54 9.35 21.44 0.20 -48.34 16 20 Si 0.95 42.20 29.54 68.60 2.03 44.22 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 24 C 0.07 1.55 5.24 86.25 0.45 2.00 16 25 C -0.09 -1.51 0.78 -52.05 -0.04 -1.55 16 26 C -0.12 -1.74 7.03 31.00 0.22 -1.52 16 27 C -0.14 -2.76 7.74 31.17 0.24 -2.52 16 28 C -0.13 -2.66 6.64 31.01 0.21 -2.46 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.59 6.14 -2.38 -0.01 0.58 16 31 H 0.05 0.63 6.04 -2.39 -0.01 0.61 16 32 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 33 H 0.05 0.97 7.91 -2.39 -0.02 0.95 16 34 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.80 7.00 -2.39 -0.02 1.78 16 36 H 0.41 15.12 5.65 -92.71 -0.52 14.59 16 37 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.03 1.16 6.86 -2.39 -0.02 1.14 16 40 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 41 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 44 H 0.03 1.12 6.86 -2.39 -0.02 1.11 16 45 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 46 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.14 3.98 3.11 -77.93 -0.24 3.74 16 48 H 0.11 1.17 5.92 -2.39 -0.01 1.15 16 49 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 50 H 0.06 1.52 7.66 -2.38 -0.02 1.50 16 51 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 52 H 0.03 0.83 8.09 -2.38 -0.02 0.81 16 53 H 0.10 1.65 5.70 -2.39 -0.01 1.64 16 Total: -1.00 -58.02 391.51 3.44 -54.58 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.16 Total: 31.43 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: 5.89 Total: 0.99 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -4.54 Total: -92.39 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -0.09 Total: -38.84 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.22 kcal Total: -58.02 3.44 -54.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591559375.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.548 kcal (2) G-P(sol) polarization free energy of solvation -58.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds