Wall clock time and date at job start Tue Mar 31 2020 20:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.89456 * 2 1 4 4 C 1.54984 * 110.82937 * 123.53773 * 2 1 3 5 5 C 1.54286 * 103.83790 * 155.07844 * 4 2 1 6 6 C 1.51454 * 106.84687 * 337.23995 * 5 4 2 7 7 C 1.32994 * 126.33876 * 179.52732 * 6 5 4 8 8 C 1.47107 * 119.99517 * 179.68640 * 7 6 5 9 9 O 1.21613 * 120.00270 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99707 * 179.72624 * 8 7 6 11 11 C 1.46506 * 119.99880 * 0.26986 * 10 8 7 12 12 C 1.50699 * 109.46706 * 90.00613 * 11 10 8 13 13 H 1.07998 * 120.00471 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99849 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00236 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99947 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.47046 * 90.00123 * 16 14 12 18 18 H 1.48497 * 109.46932 * 210.00096 * 16 14 12 19 19 H 1.48496 * 109.47113 * 330.00370 * 16 14 12 20 20 C 1.46499 * 120.00195 * 180.27735 * 10 8 7 21 21 C 1.53000 * 109.47306 * 89.99609 * 20 10 8 22 22 N 1.46893 * 109.47137 * 180.02562 * 21 20 10 23 23 C 1.47017 * 110.99982 * 293.63481 * 22 21 20 24 24 C 1.53102 * 109.25940 * 177.60959 * 23 22 21 25 25 O 1.43012 * 109.25846 * 56.84637 * 24 23 22 26 26 C 1.43021 * 113.73892 * 301.32860 * 25 24 23 27 27 C 1.47014 * 111.00484 * 169.99822 * 22 21 20 28 28 C 1.51847 * 107.31808 * 359.26085 * 6 5 4 29 29 H 1.09000 * 109.47544 * 182.09810 * 1 2 3 30 30 H 1.09009 * 109.47213 * 302.09563 * 1 2 3 31 31 H 1.09004 * 109.47308 * 62.09300 * 1 2 3 32 32 H 1.08998 * 110.57254 * 273.86043 * 4 2 1 33 33 H 1.09000 * 110.57228 * 36.72999 * 4 2 1 34 34 H 1.08994 * 110.10597 * 217.82681 * 5 4 2 35 35 H 1.09003 * 109.87223 * 96.52061 * 5 4 2 36 36 H 1.07991 * 120.00489 * 359.68272 * 7 6 5 37 37 H 1.08997 * 109.47351 * 210.00205 * 11 10 8 38 38 H 1.09001 * 109.47111 * 330.00312 * 11 10 8 39 39 H 0.96999 * 120.00313 * 180.02562 * 15 14 12 40 40 H 1.08994 * 109.47013 * 209.99592 * 20 10 8 41 41 H 1.09005 * 109.46881 * 329.99727 * 20 10 8 42 42 H 1.09001 * 109.46783 * 300.00210 * 21 20 10 43 43 H 1.08996 * 109.47306 * 60.00204 * 21 20 10 44 44 H 1.09002 * 109.50763 * 297.54182 * 23 22 21 45 45 H 1.09002 * 109.50832 * 57.67515 * 23 22 21 46 46 H 1.09010 * 109.50076 * 296.91332 * 24 23 22 47 47 H 1.08999 * 109.50791 * 176.78443 * 24 23 22 48 48 H 1.08998 * 109.50636 * 298.73602 * 26 25 24 49 49 H 1.09000 * 109.50462 * 178.60280 * 26 25 24 50 50 H 1.08995 * 109.50551 * 302.33151 * 27 22 21 51 51 H 1.09002 * 109.50266 * 62.45591 * 27 22 21 52 52 H 1.08992 * 110.44082 * 142.76767 * 28 6 5 53 53 H 1.08996 * 110.44396 * 265.29964 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0811 -0.8003 1.2074 5 6 3.4821 -1.2501 0.7434 6 6 3.4693 -1.2336 -0.7709 7 6 4.4845 -1.5464 -1.5711 8 6 4.3150 -1.4883 -3.0312 9 8 3.2465 -1.1546 -3.5066 10 7 5.3455 -1.8000 -3.8421 11 6 6.6325 -2.2024 -3.2694 12 6 6.6543 -3.6978 -3.0844 13 1 5.7954 -4.2893 -3.3649 14 6 7.7706 -4.3109 -2.5560 15 7 7.7896 -5.6158 -2.3941 16 14 9.2562 -3.2878 -2.0702 17 1 9.1235 -2.8644 -0.6529 18 1 10.4897 -4.0987 -2.2312 19 1 9.3361 -2.0869 -2.9400 20 6 5.1786 -1.7363 -5.2962 21 6 5.5464 -0.3360 -5.7909 22 7 5.3784 -0.2720 -7.2488 23 6 6.3484 -1.1421 -7.9295 24 6 6.0998 -1.0912 -9.4394 25 8 6.1826 0.2650 -9.8856 26 6 5.2513 1.1402 -9.2437 27 6 5.4913 1.1119 -7.7320 28 6 2.0808 -0.8000 -1.2065 29 1 -0.3634 -1.0269 0.0376 30 1 -0.3634 0.5461 0.8707 31 1 -0.3634 0.4810 -0.9082 32 1 2.1531 -0.1629 2.0887 33 1 1.4529 -1.6675 1.4110 34 1 3.6904 -2.2577 1.1032 35 1 4.2363 -0.5575 1.1172 36 1 5.4332 -1.8430 -1.1490 37 1 7.4377 -1.9078 -3.9424 38 1 6.7690 -1.7148 -2.3042 39 1 8.5747 -6.0471 -2.0220 40 1 5.8298 -2.4713 -5.7691 41 1 4.1412 -1.9514 -5.5526 42 1 4.8952 0.3991 -5.3178 43 1 6.5837 -0.1208 -5.5345 44 1 7.3599 -0.7971 -7.7154 45 1 6.2299 -2.1662 -7.5755 46 1 5.1078 -1.4866 -9.6584 47 1 6.8524 -1.6899 -9.9526 48 1 4.2348 0.8098 -9.4571 49 1 5.3903 2.1554 -9.6153 50 1 4.7473 1.7332 -7.2336 51 1 6.4892 1.4930 -7.5147 52 1 2.1401 -0.1642 -2.0897 53 1 1.4547 -1.6702 -1.4040 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753599145.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:05 Heat of formation + Delta-G solvation = -86.127668 kcal Electronic energy + Delta-G solvation = -30066.636650 eV Core-core repulsion = 26130.395667 eV Total energy + Delta-G solvation = -3936.240983 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.10700 -40.45295 -39.17688 -37.40262 -36.39343 -34.56691 -33.68684 -32.24071 -31.55577 -30.58923 -29.57490 -28.16763 -27.01419 -25.13811 -25.04555 -24.41944 -23.24587 -21.40450 -21.03974 -20.62197 -19.12549 -18.91951 -18.15458 -17.70063 -17.18365 -16.84409 -16.66559 -16.31855 -16.18728 -15.99252 -15.76507 -15.60115 -15.02820 -14.89535 -14.67920 -14.52301 -14.44435 -14.13866 -14.06643 -13.66066 -13.54532 -13.32575 -13.18080 -13.01740 -12.88554 -12.54273 -12.50170 -12.47040 -12.34565 -12.24247 -12.11462 -11.86347 -11.76612 -11.70934 -11.48626 -11.42016 -11.34143 -10.82824 -10.73436 -10.49199 -10.06786 -9.55651 -9.35065 -8.31836 -6.39281 0.47955 1.36952 1.38309 1.47829 2.11803 2.31588 2.38556 2.81995 2.96807 3.01922 3.43849 3.76128 3.77282 3.85160 3.95885 3.97558 4.04767 4.08583 4.17020 4.27330 4.30667 4.35550 4.41721 4.43579 4.50002 4.56092 4.63475 4.66698 4.69158 4.70033 4.74991 4.77308 4.79339 4.87820 4.90588 4.94310 4.96113 4.99604 5.04074 5.10998 5.15022 5.26431 5.35660 5.41732 5.51457 5.56170 5.59394 5.70073 5.87932 5.89992 6.14320 6.17370 6.59600 6.68092 7.22988 7.36001 8.84832 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.007261 B = 0.003927 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3855.495476 B = 7129.144758 C =10359.598882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.095 4.095 3 H 0.081 0.919 4 C -0.111 4.111 5 C -0.102 4.102 6 C -0.038 4.038 7 C -0.231 4.231 8 C 0.546 3.454 9 O -0.583 6.583 10 N -0.594 5.594 11 C 0.221 3.779 12 C -0.539 4.539 13 H 0.026 0.974 14 C 0.021 3.979 15 N -0.942 5.942 16 Si 0.940 3.060 17 H -0.259 1.259 18 H -0.284 1.284 19 H -0.243 1.243 20 C 0.130 3.870 21 C 0.062 3.938 22 N -0.541 5.541 23 C 0.011 3.989 24 C 0.068 3.932 25 O -0.402 6.402 26 C 0.065 3.935 27 C 0.018 3.982 28 C -0.094 4.094 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.129 0.871 37 H 0.041 0.959 38 H 0.047 0.953 39 H 0.269 0.731 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.034 0.966 44 H 0.038 0.962 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.115 0.885 48 H 0.062 0.938 49 H 0.121 0.879 50 H 0.094 0.906 51 H 0.039 0.961 52 H 0.073 0.927 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 15.457 -1.397 16.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.149 4.149 5 C -0.139 4.139 6 C -0.040 4.040 7 C -0.252 4.252 8 C 0.339 3.661 9 O -0.467 6.467 10 N -0.324 5.324 11 C 0.099 3.901 12 C -0.577 4.577 13 H 0.045 0.955 14 C -0.178 4.178 15 N -0.581 5.581 16 Si 0.762 3.238 17 H -0.184 1.184 18 H -0.209 1.209 19 H -0.166 1.166 20 C 0.006 3.994 21 C -0.067 4.067 22 N -0.267 5.267 23 C -0.117 4.117 24 C -0.009 4.009 25 O -0.321 6.321 26 C -0.011 4.011 27 C -0.110 4.110 28 C -0.131 4.131 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.147 0.853 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.133 0.867 48 H 0.080 0.920 49 H 0.139 0.861 50 H 0.112 0.888 51 H 0.057 0.943 52 H 0.092 0.908 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.332 15.365 -1.861 17.126 hybrid contribution 1.611 -0.519 0.540 1.776 sum -5.721 14.846 -1.321 15.965 Atomic orbital electron populations 1.21720 0.93589 1.02075 1.02244 1.22178 0.96517 0.98917 0.93687 0.90071 1.22457 0.94198 1.00212 0.98001 1.21426 0.99942 1.02994 0.89552 1.23225 0.94459 0.89358 0.96910 1.22053 1.01290 1.09954 0.91879 1.18765 0.82894 0.76253 0.88216 1.90626 1.26954 1.51086 1.78050 1.47776 1.13134 1.65335 1.06126 1.19626 0.81598 0.93813 0.95067 1.21480 1.01322 0.92075 1.42839 0.95520 1.25765 1.01507 0.95826 0.94675 1.70050 1.31174 1.10991 1.45891 0.85835 0.78188 0.79521 0.80250 1.18353 1.20922 1.16598 1.21170 1.01947 0.96589 0.79680 1.22218 0.99334 0.97536 0.87590 1.62123 1.50937 1.09442 1.04222 1.22923 0.93767 0.98724 0.96315 1.22734 1.02978 0.83330 0.91874 1.87944 1.60116 1.19667 1.64355 1.22794 0.93079 0.95484 0.89777 1.22859 1.01276 0.89139 0.97734 1.21727 0.92190 1.00068 0.99132 0.92738 0.90830 0.92919 0.88927 0.90861 0.89970 0.88752 0.85280 0.94148 0.93551 0.92214 0.90983 0.91379 0.91144 0.94759 0.94336 0.89611 0.91900 0.86682 0.91968 0.86143 0.88802 0.94271 0.90838 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.28 71.98 0.67 -1.82 16 2 C -0.09 -2.02 3.53 -9.47 -0.03 -2.05 16 3 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.11 -2.10 6.32 31.71 0.20 -1.90 16 5 C -0.10 -2.45 6.62 30.52 0.20 -2.25 16 6 C -0.04 -1.21 6.15 -17.01 -0.10 -1.31 16 7 C -0.23 -8.91 9.13 23.43 0.21 -8.70 16 8 C 0.55 23.39 7.62 86.57 0.66 24.05 16 9 O -0.58 -26.13 13.34 -4.07 -0.05 -26.18 16 10 N -0.59 -25.19 2.46 -830.42 -2.04 -27.23 16 11 C 0.22 9.82 3.95 85.63 0.34 10.15 16 12 C -0.54 -29.34 9.94 25.60 0.25 -29.08 16 13 H 0.03 1.69 8.06 -2.91 -0.02 1.66 16 14 C 0.02 1.16 5.47 84.66 0.46 1.62 16 15 N -0.94 -56.24 13.96 21.45 0.30 -55.94 16 16 Si 0.94 40.12 27.47 68.60 1.88 42.01 16 17 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.24 -9.41 6.54 99.48 0.65 -8.76 16 20 C 0.13 4.92 5.34 86.38 0.46 5.38 16 21 C 0.06 1.98 5.28 86.30 0.46 2.44 16 22 N -0.54 -15.03 4.73 -895.23 -4.23 -19.26 16 23 C 0.01 0.28 5.44 86.31 0.47 0.75 16 24 C 0.07 1.49 7.01 72.02 0.50 2.00 16 25 O -0.40 -9.53 10.83 -148.98 -1.61 -11.14 16 26 C 0.07 1.28 7.01 72.01 0.50 1.79 16 27 C 0.02 0.40 5.64 86.31 0.49 0.89 16 28 C -0.09 -2.84 4.87 30.86 0.15 -2.69 16 29 H 0.05 0.98 8.11 -2.39 -0.02 0.96 16 30 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.07 1.33 8.02 -2.39 -0.02 1.31 16 34 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.13 5.07 6.22 -2.91 -0.02 5.05 16 37 H 0.04 1.72 7.13 -2.39 -0.02 1.71 16 38 H 0.05 1.95 5.51 -2.39 -0.01 1.94 16 39 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.07 2.77 6.45 -2.39 -0.02 2.76 16 41 H 0.07 2.77 7.42 -2.38 -0.02 2.75 16 42 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 43 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16 44 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.09 2.34 6.38 -2.39 -0.02 2.33 16 46 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.12 2.09 8.14 -2.39 -0.02 2.08 16 48 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 49 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.09 1.94 8.09 -2.39 -0.02 1.92 16 51 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 52 H 0.07 2.55 6.27 -2.39 -0.01 2.54 16 53 H 0.07 2.23 8.04 -2.39 -0.02 2.21 16 Total: -1.00 -67.64 409.99 0.95 -66.69 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.81 Total: 31.80 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 5.90 Total: -0.73 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -5.97 Total: -102.44 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -1.67 Total: -37.32 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.88 Total: 42.01 kcal Total: -67.64 0.95 -66.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753599145.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.440 kcal (2) G-P(sol) polarization free energy of solvation -67.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds