Wall clock time and date at job start Tue Mar 31 2020 20:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 110.62230 * 2 1 4 4 C 1.54983 * 110.57170 * 237.16752 * 2 1 3 5 5 C 1.55122 * 102.22516 * 204.16612 * 4 2 1 6 6 C 1.51835 * 104.31937 * 37.93538 * 5 4 2 7 7 C 1.32996 * 126.34331 * 156.13700 * 6 5 4 8 8 C 1.47106 * 119.99856 * 179.68484 * 7 6 5 9 9 O 1.21610 * 119.99941 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99802 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99858 * 0.02562 * 10 8 7 12 12 C 1.50699 * 109.47432 * 89.99981 * 11 10 8 13 13 H 1.08003 * 119.99518 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00256 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99958 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00133 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47292 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.47438 * 119.99801 * 16 14 12 19 19 H 1.48503 * 109.47246 * 239.99631 * 16 14 12 20 20 C 1.46496 * 120.00258 * 179.97438 * 10 8 7 21 21 C 1.53000 * 109.46986 * 90.00200 * 20 10 8 22 22 N 1.46896 * 109.47078 * 180.02562 * 21 20 10 23 23 C 1.47016 * 110.99909 * 293.63372 * 22 21 20 24 24 C 1.53094 * 109.26212 * 177.61202 * 23 22 21 25 25 O 1.43015 * 109.26035 * 56.84528 * 24 23 22 26 26 C 1.43017 * 113.74086 * 301.33496 * 25 24 23 27 27 C 1.47016 * 111.00324 * 170.00256 * 22 21 20 28 28 C 1.51444 * 107.31617 * 335.86820 * 6 5 4 29 29 H 1.08998 * 109.47459 * 298.61576 * 1 2 3 30 30 H 1.08999 * 109.47520 * 58.62109 * 1 2 3 31 31 H 1.09007 * 109.47120 * 178.61753 * 1 2 3 32 32 H 1.08997 * 110.83069 * 322.55779 * 4 2 1 33 33 H 1.09003 * 110.83246 * 85.93704 * 4 2 1 34 34 H 1.09003 * 110.58293 * 279.18910 * 5 4 2 35 35 H 1.09005 * 110.41511 * 156.59095 * 5 4 2 36 36 H 1.07995 * 119.99960 * 359.96008 * 7 6 5 37 37 H 1.09005 * 109.47121 * 209.99861 * 11 10 8 38 38 H 1.08997 * 109.47160 * 329.99513 * 11 10 8 39 39 H 0.97005 * 120.00087 * 180.02562 * 15 14 12 40 40 H 1.09000 * 109.47710 * 210.00590 * 20 10 8 41 41 H 1.09000 * 109.46883 * 330.00634 * 20 10 8 42 42 H 1.09005 * 109.47322 * 299.99960 * 21 20 10 43 43 H 1.08991 * 109.47114 * 60.00204 * 21 20 10 44 44 H 1.09010 * 109.50655 * 297.54680 * 23 22 21 45 45 H 1.09000 * 109.51019 * 57.67333 * 23 22 21 46 46 H 1.09009 * 109.50554 * 296.91592 * 24 23 22 47 47 H 1.08997 * 109.51373 * 176.78602 * 24 23 22 48 48 H 1.09003 * 109.50544 * 298.73729 * 26 25 24 49 49 H 1.09001 * 109.50938 * 178.60539 * 26 25 24 50 50 H 1.09004 * 109.50255 * 302.32677 * 27 22 21 51 51 H 1.09005 * 109.50730 * 62.44685 * 27 22 21 52 52 H 1.09002 * 109.98690 * 119.94936 * 28 6 5 53 53 H 1.09009 * 109.98639 * 241.25277 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9139 1.0202 0.0000 4 6 2.0745 -0.7867 -1.2192 5 6 3.4849 -1.2114 -0.7327 6 6 3.2911 -1.5443 0.7359 7 6 4.0540 -2.3504 1.4687 8 6 3.7404 -2.5694 2.8892 9 8 2.7839 -2.0131 3.3935 10 7 4.5133 -3.3867 3.6316 11 6 5.6659 -4.0565 3.0242 12 6 6.8869 -3.1851 3.1685 13 1 6.8117 -2.2278 3.6629 14 6 8.0997 -3.6093 2.6685 15 7 8.1912 -4.7748 2.0660 16 14 9.6130 -2.5288 2.8467 17 1 9.2466 -1.2771 3.5569 18 1 10.6503 -3.2538 3.6238 19 1 10.1451 -2.1962 1.5008 20 6 4.2014 -3.6045 5.0464 21 6 3.2538 -4.7980 5.1818 22 7 2.9406 -5.0160 6.6004 23 6 4.1354 -5.4402 7.3446 24 6 3.7787 -5.5979 8.8250 25 8 2.7013 -6.5296 8.9540 26 6 1.5212 -6.1474 8.2422 27 6 1.8551 -5.9953 6.7559 28 6 2.0721 -0.7832 1.2136 29 1 -0.3634 0.4922 0.9021 30 1 -0.3634 0.5351 -0.8773 31 1 -0.3634 -1.0274 -0.0248 32 1 1.4535 -1.6580 -1.4271 33 1 2.1431 -0.1434 -2.0965 34 1 4.1929 -0.3906 -0.8469 35 1 3.8274 -2.0897 -1.2801 36 1 4.9063 -2.8407 1.0221 37 1 5.8382 -5.0091 3.5252 38 1 5.4682 -4.2327 1.9669 39 1 9.0446 -5.0734 1.7145 40 1 5.1216 -3.8070 5.5944 41 1 3.7241 -2.7135 5.4545 42 1 2.3335 -4.5954 4.6339 43 1 3.7310 -5.6889 4.7737 44 1 4.4893 -6.3935 6.9519 45 1 4.9174 -4.6886 7.2367 46 1 3.4758 -4.6328 9.2312 47 1 4.6466 -5.9672 9.3713 48 1 1.1528 -5.1983 8.6314 49 1 0.7566 -6.9141 8.3669 50 1 0.9726 -5.6488 6.2181 51 1 2.1726 -6.9575 6.3537 52 1 1.3159 -1.4800 1.5753 53 1 2.3523 -0.0917 2.0083 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753599148.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:09 Heat of formation + Delta-G solvation = -90.556160 kcal Electronic energy + Delta-G solvation = -30023.852103 eV Core-core repulsion = 26087.419086 eV Total energy + Delta-G solvation = -3936.433017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.06217 -40.44595 -39.17303 -37.37857 -36.36205 -34.56598 -33.66011 -32.23725 -31.41716 -30.51382 -29.07573 -28.17281 -27.00003 -25.20148 -25.05779 -24.72557 -23.24544 -21.40682 -20.97769 -20.73378 -19.02883 -18.50171 -18.07314 -17.71227 -17.18227 -16.87618 -16.59723 -16.34964 -16.14222 -16.00263 -15.96613 -15.50476 -15.18174 -14.67820 -14.63309 -14.46712 -14.32776 -14.02226 -13.88994 -13.70017 -13.48383 -13.28714 -13.14394 -13.01432 -12.86993 -12.65830 -12.51503 -12.41530 -12.34385 -12.26354 -12.11159 -11.87697 -11.74187 -11.68588 -11.49048 -11.42829 -11.38889 -10.74218 -10.71436 -10.47406 -10.06704 -9.57278 -9.37148 -8.22543 -6.37343 0.50471 1.38029 1.41258 1.52149 2.16190 2.35670 2.46389 2.82634 2.96908 3.07487 3.46066 3.76425 3.77217 3.85921 3.95818 3.98937 4.04281 4.08694 4.16652 4.28310 4.32115 4.36460 4.41419 4.47393 4.53223 4.55677 4.61644 4.68844 4.70794 4.75838 4.78951 4.81365 4.87423 4.92976 4.93855 4.96470 4.98858 5.02815 5.09583 5.15336 5.18543 5.26538 5.35084 5.51612 5.54253 5.62625 5.68737 5.74830 5.88906 5.91992 6.03529 6.14109 6.54978 6.79898 7.30302 7.41617 8.83144 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.006781 B = 0.003970 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4128.323467 B = 7051.111912 C =10625.146029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 H 0.083 0.917 4 C -0.109 4.109 5 C -0.100 4.100 6 C -0.040 4.040 7 C -0.227 4.227 8 C 0.544 3.456 9 O -0.586 6.586 10 N -0.598 5.598 11 C 0.257 3.743 12 C -0.543 4.543 13 H 0.049 0.951 14 C 0.023 3.977 15 N -0.920 5.920 16 Si 0.956 3.044 17 H -0.273 1.273 18 H -0.276 1.276 19 H -0.275 1.275 20 C 0.131 3.869 21 C 0.063 3.937 22 N -0.538 5.538 23 C 0.011 3.989 24 C 0.069 3.931 25 O -0.402 6.402 26 C 0.067 3.933 27 C 0.016 3.984 28 C -0.081 4.081 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.016 0.984 38 H 0.029 0.971 39 H 0.268 0.732 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.025 0.975 44 H 0.033 0.967 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.116 0.884 48 H 0.064 0.936 49 H 0.121 0.879 50 H 0.093 0.907 51 H 0.035 0.965 52 H 0.068 0.932 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.954 2.655 1.127 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 H 0.102 0.898 4 C -0.146 4.146 5 C -0.137 4.137 6 C -0.042 4.042 7 C -0.248 4.248 8 C 0.337 3.663 9 O -0.471 6.471 10 N -0.327 5.327 11 C 0.136 3.864 12 C -0.582 4.582 13 H 0.067 0.933 14 C -0.177 4.177 15 N -0.559 5.559 16 Si 0.782 3.218 17 H -0.198 1.198 18 H -0.202 1.202 19 H -0.201 1.201 20 C 0.008 3.992 21 C -0.067 4.067 22 N -0.263 5.263 23 C -0.117 4.117 24 C -0.008 4.008 25 O -0.321 6.321 26 C -0.010 4.010 27 C -0.112 4.112 28 C -0.118 4.118 29 H 0.071 0.929 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.142 0.858 37 H 0.034 0.966 38 H 0.047 0.953 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.044 0.956 44 H 0.052 0.948 45 H 0.106 0.894 46 H 0.084 0.916 47 H 0.134 0.866 48 H 0.083 0.917 49 H 0.139 0.861 50 H 0.111 0.889 51 H 0.054 0.946 52 H 0.087 0.913 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.446 3.063 1.628 13.886 hybrid contribution 1.696 -0.472 -0.395 1.804 sum -11.750 2.591 1.234 12.095 Atomic orbital electron populations 1.21754 0.93706 1.01912 1.02257 1.22081 0.96594 0.99206 0.93748 0.89849 1.22624 0.93915 1.00296 0.97757 1.21708 0.99519 1.02427 0.90032 1.23218 0.93435 0.90815 0.96749 1.22082 1.03353 1.06055 0.93318 1.18745 0.81619 0.78218 0.87762 1.90638 1.30535 1.51378 1.74539 1.48026 1.28735 1.45586 1.10378 1.19060 0.82062 0.91817 0.93466 1.21659 0.94210 1.04225 1.38069 0.93289 1.25624 1.01471 0.96222 0.94372 1.70018 1.26747 1.20572 1.38571 0.85529 0.79271 0.78898 0.78126 1.19754 1.20204 1.20091 1.21141 0.98331 0.98030 0.81711 1.22205 0.99016 0.96874 0.88556 1.62164 1.08407 1.45845 1.09933 1.22926 0.93115 0.99744 0.95934 1.22739 0.90618 0.93822 0.93624 1.87942 1.23592 1.48546 1.72040 1.22786 0.87477 1.02050 0.88673 1.22878 0.95304 0.93710 0.99289 1.21305 0.94658 0.97918 0.97937 0.92934 0.90777 0.92970 0.90869 0.88683 0.88677 0.90097 0.85753 0.96584 0.95278 0.92270 0.90954 0.91029 0.91449 0.95626 0.94850 0.89428 0.91607 0.86627 0.91731 0.86150 0.88851 0.94622 0.91343 0.92105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.12 71.98 0.66 -1.88 16 2 C -0.10 -2.11 3.49 -9.68 -0.03 -2.14 16 3 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 4 C -0.11 -2.09 6.39 32.00 0.20 -1.88 16 5 C -0.10 -2.47 6.65 30.94 0.21 -2.26 16 6 C -0.04 -1.33 6.15 -17.02 -0.10 -1.44 16 7 C -0.23 -9.19 9.13 23.43 0.21 -8.98 16 8 C 0.54 24.12 7.62 86.57 0.66 24.78 16 9 O -0.59 -26.83 13.68 -4.06 -0.06 -26.89 16 10 N -0.60 -26.60 2.46 -830.44 -2.04 -28.64 16 11 C 0.26 12.72 4.87 85.63 0.42 13.14 16 12 C -0.54 -28.95 9.39 25.60 0.24 -28.71 16 13 H 0.05 2.69 7.81 -2.91 -0.02 2.67 16 14 C 0.02 1.24 5.46 84.65 0.46 1.70 16 15 N -0.92 -50.92 13.29 21.45 0.28 -50.63 16 16 Si 0.96 42.18 29.54 68.60 2.03 44.21 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 20 C 0.13 5.17 5.34 86.38 0.46 5.63 16 21 C 0.06 2.16 5.28 86.30 0.46 2.62 16 22 N -0.54 -15.83 4.73 -895.21 -4.23 -20.06 16 23 C 0.01 0.30 5.44 86.31 0.47 0.77 16 24 C 0.07 1.56 7.01 72.01 0.50 2.06 16 25 O -0.40 -9.90 10.83 -148.98 -1.61 -11.52 16 26 C 0.07 1.38 7.01 72.01 0.50 1.88 16 27 C 0.02 0.40 5.64 86.31 0.49 0.88 16 28 C -0.08 -2.48 4.40 30.52 0.13 -2.35 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.07 1.38 8.05 -2.39 -0.02 1.36 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.12 5.37 6.23 -2.91 -0.02 5.35 16 37 H 0.02 0.84 8.07 -2.38 -0.02 0.82 16 38 H 0.03 1.51 6.10 -2.39 -0.01 1.49 16 39 H 0.27 13.99 8.31 -92.70 -0.77 13.22 16 40 H 0.07 2.85 6.45 -2.39 -0.02 2.83 16 41 H 0.07 2.93 7.42 -2.39 -0.02 2.91 16 42 H 0.07 2.43 8.04 -2.38 -0.02 2.41 16 43 H 0.03 0.94 8.12 -2.39 -0.02 0.92 16 44 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.09 2.47 6.38 -2.39 -0.02 2.45 16 46 H 0.07 1.41 8.14 -2.38 -0.02 1.40 16 47 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.09 2.10 8.09 -2.38 -0.02 2.08 16 51 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 52 H 0.07 2.29 7.35 -2.39 -0.02 2.27 16 53 H 0.06 2.10 7.69 -2.38 -0.02 2.08 16 Total: -1.00 -63.04 414.16 1.17 -61.87 By element: Atomic # 1 Polarization: 26.96 SS G_CDS: 0.86 Total: 27.83 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 5.94 Total: 3.83 kcal Atomic # 7 Polarization: -93.34 SS G_CDS: -5.99 Total: -99.33 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -1.67 Total: -38.41 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.21 kcal Total: -63.04 1.17 -61.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753599148.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.689 kcal (2) G-P(sol) polarization free energy of solvation -63.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds