Wall clock time and date at job start Tue Mar 31 2020 21:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.49111 * 2 1 4 4 C 1.53187 * 109.52424 * 120.07800 * 2 1 3 5 5 N 1.46931 * 108.77338 * 174.60389 * 4 2 1 6 6 C 1.36940 * 120.62535 * 126.41961 * 5 4 2 7 7 H 1.08005 * 119.99555 * 217.61121 * 6 5 4 8 8 C 1.38810 * 120.00566 * 37.61286 * 6 5 4 9 9 N 1.31621 * 119.99763 * 11.92852 * 8 6 5 10 10 Si 1.86799 * 120.00081 * 191.93493 * 8 6 5 11 11 H 1.48496 * 109.47251 * 59.99816 * 10 8 6 12 12 H 1.48506 * 109.46997 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47033 * 299.99747 * 10 8 6 14 14 C 1.46921 * 118.74156 * 306.39038 * 5 4 2 15 15 C 1.53194 * 108.77309 * 53.61422 * 14 5 4 16 16 C 1.53042 * 109.50104 * 239.94005 * 2 1 3 17 17 H 1.08998 * 109.45794 * 58.63617 * 16 2 1 18 18 N 1.46504 * 109.45579 * 298.66818 * 16 2 1 19 19 C 1.34773 * 119.99926 * 155.00093 * 18 16 2 20 20 O 1.21286 * 120.00056 * 4.94035 * 19 18 16 21 21 C 1.50700 * 119.99984 * 184.94673 * 19 18 16 22 22 C 1.52998 * 109.54717 * 67.22178 * 21 19 18 23 23 C 1.52994 * 117.49843 * 59.81828 * 22 21 19 24 24 C 1.53000 * 60.03147 * 107.50412 * 23 22 21 25 25 C 1.53182 * 109.61574 * 187.44343 * 21 19 18 26 26 C 1.53089 * 109.16134 * 62.92779 * 25 21 19 27 27 O 1.42901 * 109.41557 * 57.60986 * 26 25 21 28 28 C 1.42895 * 114.09914 * 298.83605 * 27 26 25 29 29 C 1.53098 * 109.41199 * 61.15892 * 28 27 26 30 30 H 1.08998 * 109.47277 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47655 * 300.06549 * 1 2 3 32 32 H 1.09001 * 109.47335 * 60.06659 * 1 2 3 33 33 H 1.08998 * 109.58806 * 294.39212 * 4 2 1 34 34 H 1.09002 * 109.58493 * 54.82361 * 4 2 1 35 35 H 0.97000 * 120.00117 * 179.97438 * 9 8 6 36 36 H 1.09001 * 109.59012 * 173.39417 * 14 5 4 37 37 H 1.09000 * 109.59274 * 293.68497 * 14 5 4 38 38 H 1.08992 * 109.50130 * 185.41288 * 15 14 5 39 39 H 1.09000 * 109.50029 * 65.30990 * 15 14 5 40 40 H 0.96999 * 119.99682 * 335.00322 * 18 16 2 41 41 H 1.09005 * 115.54631 * 274.15793 * 22 21 19 42 42 H 1.09000 * 117.50367 * 215.00227 * 23 22 21 43 43 H 1.09002 * 117.50092 * 0.02562 * 23 22 21 44 44 H 1.09008 * 117.49936 * 107.49671 * 24 23 22 45 45 H 1.09000 * 117.49986 * 252.52289 * 24 23 22 46 46 H 1.08996 * 109.51978 * 182.83317 * 25 21 19 47 47 H 1.09002 * 109.52314 * 303.02447 * 25 21 19 48 48 H 1.09003 * 109.48616 * 297.62369 * 26 25 21 49 49 H 1.09002 * 109.48806 * 177.59769 * 26 25 21 50 50 H 1.09003 * 109.48558 * 301.17891 * 28 27 26 51 51 H 1.09001 * 109.49156 * 181.14387 * 28 27 26 52 52 H 1.09003 * 109.52525 * 182.48423 * 29 28 27 53 53 H 1.09004 * 109.57016 * 62.32797 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0419 -0.7236 1.2494 5 7 3.5053 -0.8282 1.1689 6 6 4.2942 -0.3781 2.1938 7 1 5.2336 0.1093 1.9780 8 6 3.8867 -0.5482 3.5097 9 7 2.8723 -1.3395 3.7874 10 14 4.7780 0.3459 4.8865 11 1 4.6826 1.8116 4.6681 12 1 4.1535 -0.0018 6.1882 13 1 6.2061 -0.0609 4.8978 14 6 4.1059 -1.4254 -0.0315 15 6 3.5709 -0.6938 -1.2666 16 6 2.0408 -0.7226 -1.2486 17 1 1.6578 -0.2240 -2.1389 18 7 1.5790 -2.1129 -1.2311 19 6 1.4510 -2.7950 -2.3863 20 8 1.8024 -2.2894 -3.4313 21 6 0.8710 -4.1859 -2.3798 22 6 -0.6066 -4.1225 -1.9881 23 6 -1.5386 -3.2976 -2.8778 24 6 -1.6118 -4.8256 -2.9037 25 6 1.0052 -4.8056 -3.7742 26 6 2.4896 -4.9373 -4.1248 27 8 3.1437 -5.7298 -3.1317 28 6 3.0918 -5.1756 -1.8156 29 6 1.6315 -5.0534 -1.3722 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5148 0.8894 32 1 -0.3634 0.5128 -0.8906 33 1 1.7643 -0.1579 2.1388 34 1 1.6064 -1.7217 1.2978 35 1 2.5877 -1.4587 4.7071 36 1 5.1902 -1.3227 0.0126 37 1 3.8408 -2.4812 -0.0863 38 1 3.9334 -1.1881 -2.1678 39 1 3.9154 0.3403 -1.2546 40 1 1.3655 -2.5423 -0.3880 41 1 -0.8098 -4.1304 -0.9171 42 1 -2.3550 -2.7628 -2.3924 43 1 -1.0991 -2.8003 -3.7425 44 1 -2.4763 -5.2961 -2.4352 45 1 -1.2200 -5.3333 -3.7851 46 1 0.5405 -5.7915 -3.7809 47 1 0.5135 -4.1651 -4.5064 48 1 2.9447 -3.9474 -4.1576 49 1 2.5922 -5.4170 -5.0982 50 1 3.5547 -4.1888 -1.8181 51 1 3.6279 -5.8269 -1.1253 52 1 1.5876 -4.5902 -0.3865 53 1 1.1787 -6.0441 -1.3296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942531013.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:27 Heat of formation + Delta-G solvation = -62.929485 kcal Electronic energy + Delta-G solvation = -32656.479144 eV Core-core repulsion = 28721.244110 eV Total energy + Delta-G solvation = -3935.235034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.22747 -40.20448 -38.66525 -38.07375 -35.90056 -34.23337 -33.49886 -33.37679 -31.98619 -31.19873 -27.56511 -27.40714 -26.68696 -24.73664 -24.23615 -23.55984 -22.72502 -22.41628 -22.21027 -20.27779 -20.03951 -18.69752 -17.77071 -17.62228 -17.01236 -16.83979 -16.64548 -16.31468 -15.82118 -15.76976 -15.72223 -15.32086 -15.13838 -14.92472 -14.76030 -14.58107 -14.20709 -14.10744 -13.59393 -13.34283 -13.25476 -13.10070 -12.89064 -12.79125 -12.67843 -12.56634 -12.51972 -12.47736 -12.20197 -12.04258 -11.88691 -11.81634 -11.68892 -11.56771 -11.49377 -11.36990 -11.11745 -11.07881 -10.55311 -10.50065 -10.29048 -9.89960 -8.51821 -7.87357 -5.43164 1.47498 1.48488 1.54940 1.69284 2.25146 2.50270 2.87482 2.92398 3.28077 3.40862 3.61673 3.67669 3.74352 3.81524 3.97017 3.99760 4.06332 4.09808 4.16328 4.18135 4.25984 4.32853 4.34442 4.54915 4.59182 4.62523 4.66807 4.68670 4.74717 4.76558 4.80449 4.85331 4.86800 4.96235 4.99742 5.02584 5.03936 5.09557 5.10901 5.15536 5.20450 5.26264 5.29553 5.31010 5.36143 5.47353 5.65225 5.67553 5.72688 6.20252 6.44860 6.63996 7.18613 7.30659 7.83867 8.41434 9.16778 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015320 B = 0.003874 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.278555 B = 7225.451803 C = 7730.797888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.116 4.116 3 H 0.069 0.931 4 C 0.197 3.803 5 N -0.603 5.603 6 C -0.274 4.274 7 H 0.053 0.947 8 C -0.030 4.030 9 N -0.923 5.923 10 Si 0.960 3.040 11 H -0.279 1.279 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.153 3.847 15 C -0.134 4.134 16 C 0.170 3.830 17 H 0.074 0.926 18 N -0.702 5.702 19 C 0.528 3.472 20 O -0.575 6.575 21 C -0.041 4.041 22 C -0.154 4.154 23 C -0.181 4.181 24 C -0.157 4.157 25 C -0.123 4.123 26 C 0.049 3.951 27 O -0.393 6.393 28 C 0.056 3.944 29 C -0.137 4.137 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.010 0.990 35 H 0.252 0.748 36 H 0.041 0.959 37 H 0.015 0.985 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.402 0.598 41 H 0.115 0.885 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.078 0.922 48 H 0.044 0.956 49 H 0.109 0.891 50 H 0.030 0.970 51 H 0.107 0.893 52 H 0.076 0.924 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 -7.227 -12.946 17.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.136 4.136 3 H 0.087 0.913 4 C 0.071 3.929 5 N -0.326 5.326 6 C -0.404 4.404 7 H 0.071 0.929 8 C -0.227 4.227 9 N -0.567 5.567 10 Si 0.788 3.212 11 H -0.205 1.205 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.027 3.973 15 C -0.174 4.174 16 C 0.065 3.935 17 H 0.092 0.908 18 N -0.353 5.353 19 C 0.315 3.685 20 O -0.455 6.455 21 C -0.044 4.044 22 C -0.172 4.172 23 C -0.218 4.218 24 C -0.193 4.193 25 C -0.161 4.161 26 C -0.028 4.028 27 O -0.312 6.312 28 C -0.021 4.021 29 C -0.175 4.175 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.028 0.972 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.033 0.967 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.239 0.761 41 H 0.133 0.867 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.117 0.883 47 H 0.097 0.903 48 H 0.062 0.938 49 H 0.127 0.873 50 H 0.048 0.952 51 H 0.125 0.875 52 H 0.095 0.905 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -9.472 -7.061 -13.547 17.975 hybrid contribution 0.569 0.808 1.572 1.857 sum -8.903 -6.253 -11.976 16.180 Atomic orbital electron populations 1.21640 0.93485 1.01999 1.01664 1.21935 0.96614 0.99615 0.95474 0.91308 1.20470 0.82750 0.95673 0.94025 1.44104 1.01951 1.70012 1.16578 1.19272 1.03808 1.31488 0.85863 0.92926 1.25891 0.99134 0.98128 0.99569 1.70082 1.29795 1.38241 1.18595 0.85480 0.78387 0.78661 0.78655 1.20520 1.21734 1.20416 1.20867 0.95917 0.94093 0.86409 1.22231 0.96251 1.01000 0.97914 1.20676 0.93170 0.81862 0.97773 0.90824 1.46086 1.66599 1.13463 1.09156 1.20743 0.76884 0.87777 0.83083 1.90613 1.51491 1.70960 1.32442 1.20337 0.95045 0.90912 0.98073 1.22170 0.88649 1.08041 0.98369 1.22950 1.02026 0.94958 1.01840 1.23232 1.00324 0.94215 1.01564 1.22127 0.97390 1.01900 0.94657 1.22817 0.92197 0.95694 0.92056 1.87875 1.77144 1.48916 1.17287 1.22629 0.96369 0.98547 0.84519 1.22238 0.95501 1.01722 0.98052 0.92428 0.92718 0.91939 0.93961 0.97220 0.93918 0.94014 0.96710 0.92504 0.91817 0.76118 0.86652 0.87968 0.90089 0.87063 0.87374 0.88284 0.90314 0.93785 0.87339 0.95214 0.87520 0.90511 0.87972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.65 9.06 71.98 0.65 -3.00 16 2 C -0.12 -3.98 2.67 -10.72 -0.03 -4.00 16 3 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 4 C 0.20 8.54 4.23 86.36 0.37 8.91 16 5 N -0.60 -28.85 2.94 -699.09 -2.05 -30.90 16 6 C -0.27 -14.70 9.49 84.03 0.80 -13.90 16 7 H 0.05 2.84 7.86 -2.91 -0.02 2.81 16 8 C -0.03 -1.60 4.98 84.86 0.42 -1.18 16 9 N -0.92 -51.63 11.63 21.65 0.25 -51.37 16 10 Si 0.96 43.58 29.57 68.60 2.03 45.61 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 13 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 14 C 0.15 6.37 6.25 86.36 0.54 6.91 16 15 C -0.13 -4.81 5.77 30.67 0.18 -4.63 16 16 C 0.17 5.57 2.18 45.02 0.10 5.67 16 17 H 0.07 2.43 7.65 -2.39 -0.02 2.41 16 18 N -0.70 -20.90 3.48 -442.39 -1.54 -22.44 16 19 C 0.53 15.20 4.64 87.66 0.41 15.61 16 20 O -0.57 -19.74 13.84 -3.05 -0.04 -19.78 16 21 C -0.04 -0.91 0.52 -52.81 -0.03 -0.94 16 22 C -0.15 -2.89 5.14 -10.77 -0.06 -2.94 16 23 C -0.18 -3.31 9.54 30.59 0.29 -3.02 16 24 C -0.16 -2.29 9.58 30.62 0.29 -2.00 16 25 C -0.12 -2.59 3.15 30.68 0.10 -2.49 16 26 C 0.05 1.20 6.56 72.01 0.47 1.67 16 27 O -0.39 -10.65 10.76 -148.98 -1.60 -12.26 16 28 C 0.06 1.47 6.62 72.02 0.48 1.94 16 29 C -0.14 -3.07 4.78 30.68 0.15 -2.92 16 30 H 0.06 1.53 7.54 -2.39 -0.02 1.51 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.04 2.12 6.65 -2.39 -0.02 2.11 16 34 H 0.01 0.44 6.64 -2.39 -0.02 0.42 16 35 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 36 H 0.04 1.78 7.93 -2.39 -0.02 1.77 16 37 H 0.01 0.63 7.74 -2.39 -0.02 0.61 16 38 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.40 12.16 5.57 -92.71 -0.52 11.65 16 41 H 0.12 2.10 8.12 -2.38 -0.02 2.08 16 42 H 0.10 1.71 8.14 -2.39 -0.02 1.70 16 43 H 0.08 1.75 7.67 -2.39 -0.02 1.73 16 44 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.11 1.45 5.83 -2.39 -0.01 1.44 16 46 H 0.10 1.69 6.79 -2.39 -0.02 1.67 16 47 H 0.08 1.70 7.13 -2.39 -0.02 1.68 16 48 H 0.04 1.33 6.09 -2.39 -0.01 1.31 16 49 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.03 0.91 7.38 -2.39 -0.02 0.90 16 51 H 0.11 2.53 8.14 -2.39 -0.02 2.52 16 52 H 0.08 1.79 7.03 -2.39 -0.02 1.78 16 53 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -61.69 392.02 2.54 -59.15 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: 0.38 Total: 32.31 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 5.12 Total: -0.31 kcal Atomic # 7 Polarization: -101.38 SS G_CDS: -3.34 Total: -104.72 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -1.65 Total: -32.04 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -61.69 2.54 -59.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942531013.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.781 kcal (2) G-P(sol) polarization free energy of solvation -61.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds