Wall clock time and date at job start Tue Mar 31 2020 21:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.50042 * 2 1 4 4 C 1.53197 * 109.49685 * 239.90162 * 2 1 3 5 5 N 1.46931 * 108.77663 * 185.41478 * 4 2 1 6 6 C 1.36934 * 120.63095 * 233.63100 * 5 4 2 7 7 H 1.08008 * 119.99935 * 23.69703 * 6 5 4 8 8 C 1.38808 * 120.00302 * 203.70040 * 6 5 4 9 9 N 1.31621 * 119.99654 * 24.81558 * 8 6 5 10 10 Si 1.86796 * 120.00149 * 204.81907 * 8 6 5 11 11 H 1.48498 * 109.47434 * 94.99257 * 10 8 6 12 12 H 1.48507 * 109.46840 * 214.99096 * 10 8 6 13 13 H 1.48498 * 109.46999 * 334.98631 * 10 8 6 14 14 C 1.46920 * 118.73555 * 53.61009 * 5 4 2 15 15 C 1.53188 * 108.77918 * 306.39047 * 14 5 4 16 16 C 1.53035 * 109.31345 * 54.63561 * 15 14 5 17 17 H 1.08998 * 109.45318 * 178.62299 * 16 15 14 18 18 N 1.46502 * 109.46205 * 58.65714 * 16 15 14 19 19 C 1.34776 * 119.99734 * 84.93063 * 18 16 15 20 20 O 1.21285 * 120.00354 * 5.01668 * 19 18 16 21 21 C 1.50702 * 119.99974 * 185.02334 * 19 18 16 22 22 C 1.53004 * 109.61822 * 67.66617 * 21 19 18 23 23 C 1.53001 * 117.49771 * 128.52715 * 22 21 19 24 24 C 1.52999 * 117.49546 * 59.86808 * 22 21 19 25 25 C 1.53186 * 109.54083 * 307.44746 * 21 19 18 26 26 C 1.53091 * 109.21318 * 297.14242 * 25 21 19 27 27 O 1.42897 * 109.41759 * 302.36210 * 26 25 21 28 28 C 1.42902 * 114.09798 * 61.15823 * 27 26 25 29 29 C 1.53092 * 109.41630 * 298.83994 * 28 27 26 30 30 H 1.09005 * 109.46833 * 299.93545 * 1 2 3 31 31 H 1.08999 * 109.46914 * 59.93224 * 1 2 3 32 32 H 1.08997 * 109.47606 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.58420 * 305.20320 * 4 2 1 34 34 H 1.08997 * 109.58441 * 65.48745 * 4 2 1 35 35 H 0.97007 * 120.00134 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.59026 * 66.17922 * 14 5 4 37 37 H 1.09007 * 109.58627 * 186.45843 * 14 5 4 38 38 H 1.09002 * 109.49599 * 294.68561 * 15 14 5 39 39 H 1.08999 * 109.50343 * 174.58850 * 15 14 5 40 40 H 0.97001 * 120.00002 * 264.93991 * 18 16 15 41 41 H 1.08997 * 115.54804 * 274.19931 * 22 21 19 42 42 H 1.08999 * 117.49831 * 0.02562 * 23 22 21 43 43 H 1.08999 * 117.49812 * 145.02067 * 23 22 21 44 44 H 1.09002 * 117.49862 * 214.97612 * 24 22 21 45 45 H 1.08995 * 117.50259 * 359.97438 * 24 22 21 46 46 H 1.09004 * 109.52316 * 177.20676 * 25 21 19 47 47 H 1.08997 * 109.52088 * 57.07985 * 25 21 19 48 48 H 1.09002 * 109.47888 * 62.34373 * 26 25 21 49 49 H 1.08997 * 109.48013 * 182.36331 * 26 25 21 50 50 H 1.08993 * 109.48557 * 58.82632 * 28 27 26 51 51 H 1.09008 * 109.47897 * 178.85968 * 28 27 26 52 52 H 1.08997 * 109.52298 * 177.51450 * 29 28 27 53 53 H 1.08998 * 109.52258 * 297.64704 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0413 -0.7242 -1.2494 5 7 3.5046 -0.8296 -1.1694 6 6 4.2936 -0.3793 -2.1940 7 1 3.9212 0.3758 -2.8706 8 6 5.5719 -0.8931 -2.3631 9 7 5.8645 -2.0927 -1.9073 10 14 6.8768 0.1178 -3.2376 11 1 7.6883 0.8527 -2.2344 12 1 7.7579 -0.7839 -4.0225 13 1 6.2215 1.0879 -4.1511 14 6 4.1052 -1.4268 0.0311 15 6 3.5708 -0.6948 1.2661 16 6 2.0408 -0.7228 1.2485 17 1 1.6584 -0.2238 2.1389 18 7 1.5782 -2.1127 1.2314 19 6 1.4501 -2.7946 2.3868 20 8 1.6296 -2.2319 3.4462 21 6 1.0839 -4.2562 2.3626 22 6 2.2348 -5.0643 1.7598 23 6 2.7426 -6.2702 2.5528 24 6 3.5902 -4.9984 2.4665 25 6 -0.1787 -4.4542 1.5179 26 6 -1.3439 -3.7060 2.1706 27 8 -1.5257 -4.1818 3.5058 28 6 -0.3951 -3.9801 4.3561 29 6 0.8084 -4.7394 3.7913 30 1 -0.3633 0.5129 0.8906 31 1 -0.3633 0.5149 -0.8894 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6051 -1.7220 -1.2975 34 1 1.7616 -0.1599 -2.1390 35 1 6.7580 -2.4517 -2.0251 36 1 3.8374 -2.4819 0.0874 37 1 5.1897 -1.3271 -0.0147 38 1 3.9160 0.3390 1.2539 39 1 3.9333 -1.1892 2.1674 40 1 1.3642 -2.5423 0.3884 41 1 2.2373 -5.1397 0.6724 42 1 2.2565 -6.4881 3.5037 43 1 3.0795 -7.1388 1.9871 44 1 4.4844 -5.0310 1.8441 45 1 3.6621 -4.3792 3.3606 46 1 -0.4150 -5.5167 1.4596 47 1 -0.0107 -4.0627 0.5146 48 1 -1.1241 -2.6385 2.1919 49 1 -2.2540 -3.8783 1.5960 50 1 -0.1628 -2.9163 4.4060 51 1 -0.6217 -4.3501 5.3561 52 1 1.6828 -4.5511 4.4141 53 1 0.5923 -5.8077 3.7799 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942531016.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:31 Heat of formation + Delta-G solvation = -59.089132 kcal Electronic energy + Delta-G solvation = -32663.316420 eV Core-core repulsion = 28728.247916 eV Total energy + Delta-G solvation = -3935.068504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.22887 -40.22754 -38.65665 -38.11204 -36.00583 -34.30493 -33.60411 -32.87742 -32.08137 -31.45419 -27.53021 -27.40605 -26.65589 -24.71021 -24.19778 -23.52564 -22.86953 -22.49053 -22.23620 -20.27000 -20.04982 -18.67663 -17.76182 -17.60482 -17.00406 -16.86004 -16.73485 -16.16354 -15.97325 -15.77965 -15.65010 -15.39922 -15.30360 -14.81042 -14.71553 -14.55913 -14.31721 -14.05895 -13.56394 -13.34769 -13.23985 -13.14984 -13.02298 -12.72885 -12.69115 -12.53729 -12.51570 -12.37377 -12.17299 -12.07011 -11.95056 -11.84290 -11.67827 -11.57778 -11.47454 -11.38591 -11.14295 -11.08446 -10.51121 -10.48507 -10.32813 -9.90470 -8.72884 -7.89579 -5.24892 1.44551 1.48612 1.55572 1.66103 2.25848 2.51249 2.83833 2.95083 3.24045 3.40461 3.59686 3.66107 3.73656 3.78545 3.95651 4.00933 4.07177 4.08055 4.11901 4.12425 4.27766 4.32937 4.40223 4.55630 4.58788 4.63115 4.65130 4.68028 4.76688 4.77700 4.79016 4.80893 4.86406 4.97235 4.99302 5.01301 5.02173 5.08332 5.10545 5.17086 5.19851 5.23855 5.26085 5.30610 5.42152 5.50387 5.61180 5.67275 5.73797 6.23185 6.35259 6.62560 7.13475 7.30148 7.87271 8.36990 9.16565 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.004027 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.199642 B = 6951.936432 C = 7924.347155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 H 0.074 0.926 4 C 0.151 3.849 5 N -0.605 5.605 6 C -0.261 4.261 7 H 0.069 0.931 8 C -0.045 4.045 9 N -0.925 5.925 10 Si 0.952 3.048 11 H -0.293 1.293 12 H -0.297 1.297 13 H -0.267 1.267 14 C 0.191 3.809 15 C -0.141 4.141 16 C 0.168 3.832 17 H 0.073 0.927 18 N -0.701 5.701 19 C 0.528 3.472 20 O -0.577 6.577 21 C -0.040 4.040 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.191 4.191 25 C -0.139 4.139 26 C 0.056 3.944 27 O -0.393 6.393 28 C 0.054 3.946 29 C -0.126 4.126 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.023 0.977 34 H 0.058 0.942 35 H 0.247 0.753 36 H 0.006 0.994 37 H 0.042 0.958 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.403 0.597 41 H 0.108 0.892 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.085 0.915 48 H 0.037 0.963 49 H 0.119 0.881 50 H 0.045 0.955 51 H 0.107 0.893 52 H 0.070 0.930 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.447 -6.219 8.558 17.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.127 4.127 3 H 0.093 0.907 4 C 0.026 3.974 5 N -0.328 5.328 6 C -0.391 4.391 7 H 0.086 0.914 8 C -0.241 4.241 9 N -0.570 5.570 10 Si 0.781 3.219 11 H -0.220 1.220 12 H -0.225 1.225 13 H -0.192 1.192 14 C 0.065 3.935 15 C -0.181 4.181 16 C 0.063 3.937 17 H 0.091 0.909 18 N -0.352 5.352 19 C 0.315 3.685 20 O -0.458 6.458 21 C -0.044 4.044 22 C -0.166 4.166 23 C -0.186 4.186 24 C -0.228 4.228 25 C -0.177 4.177 26 C -0.020 4.020 27 O -0.312 6.312 28 C -0.023 4.023 29 C -0.164 4.164 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.024 0.976 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.240 0.760 41 H 0.126 0.874 42 H 0.133 0.867 43 H 0.126 0.874 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.119 0.881 47 H 0.104 0.896 48 H 0.055 0.945 49 H 0.137 0.863 50 H 0.064 0.936 51 H 0.125 0.875 52 H 0.089 0.911 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.340 -5.967 9.305 18.106 hybrid contribution 1.846 0.567 -1.002 2.175 sum -12.494 -5.400 8.304 15.944 Atomic orbital electron populations 1.21688 0.92723 1.02307 1.02304 1.21790 0.96904 0.99599 0.94415 0.90743 1.21053 0.83389 0.96973 0.96031 1.44287 1.01074 1.71475 1.15946 1.19485 0.96427 1.15157 1.08038 0.91364 1.25506 1.01226 0.96083 1.01272 1.70244 1.19965 1.14916 1.51913 0.85474 0.79815 0.78579 0.77991 1.21992 1.22452 1.19168 1.20360 0.96768 0.92732 0.83672 1.22362 0.96700 1.00700 0.98372 1.20695 0.92621 0.82025 0.98384 0.90895 1.46010 1.66551 1.13493 1.09101 1.20759 0.75389 0.89027 0.83321 1.90612 1.52680 1.71101 1.31363 1.20374 0.95850 0.89974 0.98156 1.22156 0.93579 1.02162 0.98723 1.23223 1.01632 0.91338 1.02402 1.22854 0.94670 1.02754 1.02523 1.22288 0.92590 1.03941 0.98844 1.22720 0.99633 0.96464 0.83214 1.87877 1.38563 1.82777 1.21951 1.22745 0.85476 0.99682 0.94373 1.22161 0.99133 1.01403 0.93699 0.92359 0.91314 0.92173 0.95941 0.92378 0.94349 0.97575 0.93912 0.92432 0.93706 0.76035 0.87379 0.86676 0.87371 0.89915 0.90151 0.88116 0.89619 0.94465 0.86270 0.93622 0.87486 0.91120 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 9.05 71.98 0.65 -2.34 16 2 C -0.11 -3.21 2.67 -10.71 -0.03 -3.24 16 3 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 4 C 0.15 5.52 5.50 86.36 0.47 5.99 16 5 N -0.60 -28.40 3.01 -699.10 -2.10 -30.50 16 6 C -0.26 -13.82 9.58 84.03 0.80 -13.01 16 7 H 0.07 3.53 7.92 -2.91 -0.02 3.51 16 8 C -0.04 -2.44 4.74 84.86 0.40 -2.04 16 9 N -0.92 -53.46 11.40 21.65 0.25 -53.21 16 10 Si 0.95 44.32 29.62 68.60 2.03 46.35 16 11 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 13 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 14 C 0.19 8.92 5.15 86.36 0.44 9.37 16 15 C -0.14 -5.57 5.77 30.67 0.18 -5.39 16 16 C 0.17 5.46 2.25 45.02 0.10 5.57 16 17 H 0.07 2.44 7.51 -2.39 -0.02 2.42 16 18 N -0.70 -20.55 3.48 -442.40 -1.54 -22.09 16 19 C 0.53 15.57 4.64 87.66 0.41 15.98 16 20 O -0.58 -20.57 13.80 -3.05 -0.04 -20.61 16 21 C -0.04 -0.94 0.53 -52.76 -0.03 -0.96 16 22 C -0.15 -3.53 5.14 -10.79 -0.06 -3.59 16 23 C -0.15 -2.98 9.58 30.62 0.29 -2.68 16 24 C -0.19 -5.18 9.55 30.62 0.29 -4.89 16 25 C -0.14 -2.58 4.78 30.69 0.15 -2.43 16 26 C 0.06 1.10 6.62 72.01 0.48 1.57 16 27 O -0.39 -9.04 10.77 -148.98 -1.60 -10.65 16 28 C 0.05 1.23 6.56 72.01 0.47 1.70 16 29 C -0.13 -2.73 3.15 30.73 0.10 -2.64 16 30 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.25 7.53 -2.39 -0.02 1.23 16 33 H 0.02 0.79 6.64 -2.39 -0.02 0.77 16 34 H 0.06 2.10 7.92 -2.39 -0.02 2.08 16 35 H 0.25 14.01 8.31 -92.70 -0.77 13.24 16 36 H 0.01 0.30 7.74 -2.39 -0.02 0.28 16 37 H 0.04 2.35 5.97 -2.38 -0.01 2.33 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.40 11.25 5.55 -92.71 -0.51 10.74 16 41 H 0.11 2.69 8.12 -2.39 -0.02 2.67 16 42 H 0.12 1.94 5.83 -2.39 -0.01 1.93 16 43 H 0.11 1.89 8.14 -2.39 -0.02 1.88 16 44 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 45 H 0.08 2.40 7.68 -2.39 -0.02 2.38 16 46 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 47 H 0.09 1.47 7.02 -2.39 -0.02 1.45 16 48 H 0.04 0.83 7.38 -2.39 -0.02 0.81 16 49 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.05 1.28 6.10 -2.39 -0.01 1.26 16 51 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 52 H 0.07 1.70 7.14 -2.39 -0.02 1.68 16 53 H 0.10 1.75 6.79 -2.39 -0.02 1.73 16 Total: -1.00 -64.37 391.23 2.50 -61.87 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 0.38 Total: 31.88 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 5.13 Total: -3.04 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -3.39 Total: -105.80 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -1.65 Total: -31.26 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -64.37 2.50 -61.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942531016.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.779 kcal (2) G-P(sol) polarization free energy of solvation -64.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds