Wall clock time and date at job start Tue Mar 31 2020 21:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08992 * 109.53036 * 2 1 4 4 C 1.53195 * 109.49944 * 239.91791 * 2 1 3 5 5 N 1.46923 * 108.77854 * 185.41529 * 4 2 1 6 6 C 1.36939 * 120.63132 * 233.63223 * 5 4 2 7 7 H 1.07992 * 119.99898 * 26.39684 * 6 5 4 8 8 C 1.38816 * 119.99793 * 206.39876 * 6 5 4 9 9 N 1.31619 * 120.00078 * 28.80907 * 8 6 5 10 10 Si 1.86801 * 119.99822 * 208.80782 * 8 6 5 11 11 H 1.48499 * 109.47007 * 94.98880 * 10 8 6 12 12 H 1.48486 * 109.47271 * 214.99156 * 10 8 6 13 13 H 1.48504 * 109.47165 * 334.99354 * 10 8 6 14 14 C 1.46929 * 118.73571 * 53.61017 * 5 4 2 15 15 C 1.53189 * 108.77888 * 306.39078 * 14 5 4 16 16 C 1.53040 * 109.49734 * 120.08383 * 2 1 3 17 17 H 1.09000 * 109.46124 * 61.31001 * 16 2 1 18 18 N 1.46501 * 109.46005 * 301.33797 * 16 2 1 19 19 C 1.34775 * 120.00310 * 155.00117 * 18 16 2 20 20 O 1.21278 * 120.00068 * 4.80003 * 19 18 16 21 21 C 1.50702 * 119.99872 * 184.52802 * 19 18 16 22 22 C 1.53003 * 109.54383 * 291.67845 * 21 19 18 23 23 C 1.52998 * 117.49693 * 2.88883 * 22 21 19 24 24 C 1.52994 * 117.49924 * 294.22695 * 22 21 19 25 25 C 1.53175 * 109.54121 * 171.41274 * 21 19 18 26 26 C 1.53086 * 109.16621 * 297.11509 * 25 21 19 27 27 O 1.42905 * 109.41739 * 302.39144 * 26 25 21 28 28 C 1.42899 * 114.09593 * 61.15432 * 27 26 25 29 29 C 1.53097 * 109.41562 * 298.84711 * 28 27 26 30 30 H 1.08990 * 109.47159 * 299.91897 * 1 2 3 31 31 H 1.09001 * 109.46799 * 59.91787 * 1 2 3 32 32 H 1.09000 * 109.47064 * 179.91593 * 1 2 3 33 33 H 1.09003 * 109.58636 * 305.20793 * 4 2 1 34 34 H 1.09001 * 109.58696 * 65.62536 * 4 2 1 35 35 H 0.96995 * 119.99817 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.58712 * 66.17915 * 14 5 4 37 37 H 1.09003 * 109.58284 * 186.46217 * 14 5 4 38 38 H 1.09005 * 109.49361 * 294.68953 * 15 14 5 39 39 H 1.08998 * 109.50205 * 174.59071 * 15 14 5 40 40 H 0.97005 * 119.99344 * 334.99568 * 18 16 2 41 41 H 1.08999 * 115.54391 * 148.55132 * 22 21 19 42 42 H 1.09007 * 117.49983 * 359.97438 * 23 22 21 43 43 H 1.08997 * 117.50104 * 145.01857 * 23 22 21 44 44 H 1.08998 * 117.49978 * 214.97643 * 24 22 21 45 45 H 1.09007 * 117.50078 * 359.97202 * 24 22 21 46 46 H 1.09005 * 109.52203 * 57.02046 * 25 21 19 47 47 H 1.08999 * 109.52118 * 177.20698 * 25 21 19 48 48 H 1.09004 * 109.48511 * 182.41151 * 26 25 21 49 49 H 1.09004 * 109.48692 * 62.37237 * 26 25 21 50 50 H 1.09005 * 109.48102 * 178.86460 * 28 27 26 51 51 H 1.09002 * 109.49205 * 58.83352 * 28 27 26 52 52 H 1.08997 * 109.52098 * 297.70148 * 29 28 27 53 53 H 1.09004 * 109.56962 * 177.54348 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0414 -0.7238 -1.2496 5 7 3.5047 -0.8292 -1.1696 6 6 4.2937 -0.3786 -2.1941 7 1 3.9383 0.4074 -2.8438 8 6 5.5504 -0.9321 -2.3974 9 7 5.7839 -2.1800 -2.0501 10 14 6.9101 0.0941 -3.1639 11 1 7.7395 0.6980 -2.0903 12 1 7.7610 -0.7713 -4.0194 13 1 6.3104 1.1717 -3.9913 14 6 4.1053 -1.4268 0.0308 15 6 3.5709 -0.6952 1.2661 16 6 2.0408 -0.7231 1.2483 17 1 1.6969 -1.7574 1.2351 18 7 1.5265 -0.0531 2.4453 19 6 1.3985 -0.7384 3.5987 20 8 1.7896 -1.8841 3.6700 21 6 0.7748 -0.0789 4.8017 22 6 1.7016 1.0230 5.3193 23 6 2.9852 1.2941 4.5320 24 6 3.0544 0.5967 5.8929 25 6 0.5530 -1.1225 5.9007 26 6 -0.4360 -2.1780 5.3992 27 8 -1.6592 -1.5422 5.0230 28 6 -1.5209 -0.5901 3.9663 29 6 -0.5755 0.5292 4.4103 30 1 -0.3633 0.5125 0.8906 31 1 -0.3633 0.5151 -0.8893 32 1 -0.3633 -1.0277 -0.0015 33 1 1.6052 -1.7216 -1.2981 34 1 1.7639 -0.1580 -2.1389 35 1 6.6621 -2.5666 -2.1918 36 1 3.8375 -2.4819 0.0867 37 1 5.1898 -1.3270 -0.0149 38 1 3.9160 0.3387 1.2541 39 1 3.9334 -1.1899 2.1671 40 1 1.2782 0.8839 2.4076 41 1 1.2051 1.8761 5.7816 42 1 3.1696 0.6871 3.6455 43 1 3.3335 2.3254 4.4768 44 1 3.4482 1.1696 6.7325 45 1 3.2840 -0.4689 5.9020 46 1 1.5016 -1.5999 6.1466 47 1 0.1480 -0.6364 6.7883 48 1 -0.6306 -2.8999 6.1925 49 1 -0.0129 -2.6917 4.5359 50 1 -2.4971 -0.1680 3.7273 51 1 -1.1120 -1.0828 3.0842 52 1 -1.0033 1.0486 5.2677 53 1 -0.4338 1.2339 3.5909 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942531017.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:35 Heat of formation + Delta-G solvation = -61.369581 kcal Electronic energy + Delta-G solvation = -32178.518717 eV Core-core repulsion = 28243.351325 eV Total energy + Delta-G solvation = -3935.167392 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.33702 -40.03750 -38.81471 -37.94599 -36.23892 -34.31621 -33.95176 -32.99800 -32.12043 -31.40947 -27.47636 -27.43055 -26.49380 -24.75127 -24.38634 -23.07601 -22.78810 -22.59178 -22.02305 -21.20094 -19.96519 -18.72092 -17.86610 -17.42747 -17.33659 -16.96798 -16.68304 -16.38772 -15.82990 -15.71244 -15.68674 -15.33060 -15.25254 -14.79153 -14.65113 -14.50528 -14.26749 -14.14554 -13.66541 -13.35232 -13.29026 -13.21667 -13.01762 -12.82903 -12.76248 -12.63634 -12.48951 -12.30649 -12.18423 -12.08933 -12.04824 -11.98700 -11.69371 -11.57859 -11.47611 -11.39069 -11.25075 -10.95344 -10.60110 -10.52518 -10.38117 -9.91432 -8.80989 -7.94570 -5.31165 1.44780 1.47781 1.56817 1.63762 2.14894 2.49809 2.75180 2.93734 3.18021 3.42806 3.58109 3.64014 3.70143 3.73515 3.94127 3.99262 4.01085 4.08013 4.14204 4.16272 4.26824 4.33280 4.34404 4.55752 4.56294 4.65268 4.67162 4.68892 4.71088 4.76811 4.79062 4.83833 4.85767 4.89375 4.97600 5.03728 5.05878 5.07316 5.09969 5.13486 5.18345 5.22552 5.25735 5.28876 5.33089 5.43398 5.56138 5.59564 5.66843 6.22054 6.31503 6.60084 7.07347 7.29300 7.80546 8.34528 9.12527 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.003394 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.176506 B = 8247.635202 C = 8867.952501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.099 4.099 3 H 0.082 0.918 4 C 0.149 3.851 5 N -0.605 5.605 6 C -0.270 4.270 7 H 0.073 0.927 8 C -0.044 4.044 9 N -0.928 5.928 10 Si 0.957 3.043 11 H -0.288 1.288 12 H -0.298 1.298 13 H -0.262 1.262 14 C 0.184 3.816 15 C -0.127 4.127 16 C 0.173 3.827 17 H 0.050 0.950 18 N -0.704 5.704 19 C 0.523 3.477 20 O -0.579 6.579 21 C -0.046 4.046 22 C -0.126 4.126 23 C -0.201 4.201 24 C -0.180 4.180 25 C -0.122 4.122 26 C 0.052 3.948 27 O -0.395 6.395 28 C 0.050 3.950 29 C -0.135 4.135 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.043 0.957 33 H 0.006 0.994 34 H 0.065 0.935 35 H 0.250 0.750 36 H -0.013 1.013 37 H 0.043 0.957 38 H 0.063 0.937 39 H 0.044 0.956 40 H 0.412 0.588 41 H 0.146 0.854 42 H 0.083 0.917 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.099 0.901 48 H 0.103 0.897 49 H 0.038 0.962 50 H 0.120 0.880 51 H 0.030 0.970 52 H 0.107 0.893 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.131 11.223 17.386 25.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.119 4.119 3 H 0.100 0.900 4 C 0.023 3.977 5 N -0.328 5.328 6 C -0.400 4.400 7 H 0.090 0.910 8 C -0.241 4.241 9 N -0.572 5.572 10 Si 0.785 3.215 11 H -0.215 1.215 12 H -0.225 1.225 13 H -0.187 1.187 14 C 0.058 3.942 15 C -0.167 4.167 16 C 0.068 3.932 17 H 0.069 0.931 18 N -0.355 5.355 19 C 0.310 3.690 20 O -0.459 6.459 21 C -0.049 4.049 22 C -0.144 4.144 23 C -0.238 4.238 24 C -0.217 4.217 25 C -0.160 4.160 26 C -0.025 4.025 27 O -0.314 6.314 28 C -0.027 4.027 29 C -0.172 4.172 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.024 0.976 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.005 0.995 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.063 0.937 40 H 0.249 0.751 41 H 0.164 0.836 42 H 0.101 0.899 43 H 0.132 0.868 44 H 0.134 0.866 45 H 0.091 0.909 46 H 0.086 0.914 47 H 0.117 0.883 48 H 0.121 0.879 49 H 0.056 0.944 50 H 0.138 0.862 51 H 0.049 0.951 52 H 0.125 0.875 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.928 10.272 17.452 25.158 hybrid contribution 1.724 -0.187 -0.903 1.955 sum -13.204 10.085 16.549 23.450 Atomic orbital electron populations 1.21723 0.92640 1.01745 1.03059 1.21750 0.96925 0.99901 0.93352 0.89995 1.21084 0.83444 0.96624 0.96519 1.44364 1.01197 1.71373 1.15886 1.19487 0.97864 1.13124 1.09492 0.90950 1.25692 1.02119 0.95497 1.00773 1.70337 1.21838 1.12127 1.52943 0.85413 0.79634 0.78753 0.77715 1.21466 1.22519 1.18653 1.20385 0.96716 0.92308 0.84829 1.22257 0.96343 1.00710 0.97384 1.20586 0.92266 0.95919 0.84447 0.93137 1.46101 1.65360 1.14804 1.09257 1.20939 0.77446 0.85821 0.84749 1.90684 1.50684 1.20193 1.84325 1.20521 0.96401 0.95720 0.92231 1.22297 0.88436 0.99579 1.04086 1.23428 1.01669 1.02873 0.95811 1.22994 1.00451 1.00543 0.97734 1.21979 1.00065 0.96155 0.97813 1.22723 0.84745 0.94995 1.00032 1.87881 1.31499 1.57153 1.54857 1.22789 1.01697 0.89386 0.88788 1.22302 0.91953 0.98362 1.04589 0.90636 0.91095 0.93804 0.97636 0.91692 0.94136 0.99482 0.93814 0.91781 0.93720 0.75081 0.83595 0.89895 0.86816 0.86628 0.90940 0.91420 0.88293 0.87880 0.94413 0.86196 0.95134 0.87472 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 9.03 71.98 0.65 -2.31 16 2 C -0.10 -2.96 2.46 -10.71 -0.03 -2.98 16 3 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.15 6.00 5.80 86.36 0.50 6.50 16 5 N -0.61 -30.35 2.99 -699.09 -2.09 -32.44 16 6 C -0.27 -14.78 9.50 84.03 0.80 -13.98 16 7 H 0.07 3.82 7.97 -2.91 -0.02 3.79 16 8 C -0.04 -2.49 4.58 84.86 0.39 -2.10 16 9 N -0.93 -56.45 11.90 21.65 0.26 -56.19 16 10 Si 0.96 44.80 29.64 68.60 2.03 46.83 16 11 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 12 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 13 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 14 C 0.18 9.28 5.43 86.36 0.47 9.74 16 15 C -0.13 -5.00 5.18 30.67 0.16 -4.85 16 16 C 0.17 5.66 1.84 45.02 0.08 5.74 16 17 H 0.05 1.99 7.65 -2.39 -0.02 1.97 16 18 N -0.70 -17.12 2.59 -442.40 -1.15 -18.27 16 19 C 0.52 13.81 3.46 87.66 0.30 14.11 16 20 O -0.58 -21.02 13.88 -3.02 -0.04 -21.06 16 21 C -0.05 -0.83 0.51 -52.81 -0.03 -0.86 16 22 C -0.13 -1.86 5.25 -10.80 -0.06 -1.92 16 23 C -0.20 -3.77 9.25 30.62 0.28 -3.49 16 24 C -0.18 -3.27 9.61 30.62 0.29 -2.97 16 25 C -0.12 -2.41 4.27 30.68 0.13 -2.28 16 26 C 0.05 1.19 6.56 72.01 0.47 1.66 16 27 O -0.39 -8.85 10.77 -148.98 -1.60 -10.45 16 28 C 0.05 0.87 6.62 72.01 0.48 1.35 16 29 C -0.13 -1.75 4.75 30.68 0.15 -1.60 16 30 H 0.07 1.26 7.36 -2.39 -0.02 1.24 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 35 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 36 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 37 H 0.04 2.47 6.31 -2.39 -0.02 2.45 16 38 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.04 1.83 8.09 -2.39 -0.02 1.81 16 40 H 0.41 7.47 7.09 -92.70 -0.66 6.81 16 41 H 0.15 1.32 8.07 -2.39 -0.02 1.30 16 42 H 0.08 2.07 5.01 -2.38 -0.01 2.06 16 43 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.07 1.69 7.30 -2.38 -0.02 1.67 16 46 H 0.07 1.55 6.88 -2.38 -0.02 1.53 16 47 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.04 1.12 6.13 -2.39 -0.01 1.10 16 50 H 0.12 1.50 8.14 -2.38 -0.02 1.48 16 51 H 0.03 0.66 7.38 -2.39 -0.02 0.65 16 52 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 53 H 0.10 0.91 7.16 -2.38 -0.02 0.89 16 Total: -1.00 -71.74 393.53 2.68 -69.06 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: 0.23 Total: 22.76 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.04 Total: -0.24 kcal Atomic # 7 Polarization: -103.92 SS G_CDS: -2.98 Total: -106.91 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -1.65 Total: -31.51 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.74 2.68 -69.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942531017.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.687 kcal (2) G-P(sol) polarization free energy of solvation -71.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds