Wall clock time and date at job start Tue Mar 31 2020 21:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.49578 * 2 1 4 4 C 1.53193 * 109.49268 * 120.06347 * 2 1 3 5 5 N 1.46925 * 108.77112 * 174.62065 * 4 2 1 6 6 C 1.36941 * 120.63423 * 126.36860 * 5 4 2 7 7 H 1.07999 * 120.00225 * 210.98775 * 6 5 4 8 8 C 1.38816 * 119.99606 * 30.98883 * 6 5 4 9 9 N 1.31618 * 120.00154 * 9.89077 * 8 6 5 10 10 Si 1.86799 * 119.99793 * 189.89501 * 8 6 5 11 11 H 1.48503 * 109.47152 * 89.99600 * 10 8 6 12 12 H 1.48495 * 109.47357 * 209.99661 * 10 8 6 13 13 H 1.48499 * 109.47364 * 330.00111 * 10 8 6 14 14 C 1.46931 * 118.73992 * 306.38565 * 5 4 2 15 15 C 1.53189 * 108.77157 * 53.61155 * 14 5 4 16 16 C 1.53035 * 109.52428 * 239.91651 * 2 1 3 17 17 H 1.09003 * 109.45933 * 298.68949 * 16 2 1 18 18 N 1.46505 * 109.46067 * 58.64616 * 16 2 1 19 19 C 1.34782 * 119.99867 * 204.99765 * 18 16 2 20 20 O 1.21275 * 120.00030 * 4.62672 * 19 18 16 21 21 C 1.50695 * 119.99437 * 184.62235 * 19 18 16 22 22 C 1.52997 * 109.54632 * 68.35030 * 21 19 18 23 23 C 1.52999 * 117.49808 * 3.53913 * 22 21 19 24 24 C 1.53004 * 117.49586 * 294.88238 * 22 21 19 25 25 C 1.53183 * 109.54601 * 308.07845 * 21 19 18 26 26 C 1.53090 * 109.16111 * 297.11878 * 25 21 19 27 27 O 1.42913 * 109.41536 * 302.38716 * 26 25 21 28 28 C 1.42904 * 114.09437 * 61.16071 * 27 26 25 29 29 C 1.53089 * 109.41495 * 298.84313 * 28 27 26 30 30 H 1.08999 * 109.46894 * 300.00270 * 1 2 3 31 31 H 1.09001 * 109.46780 * 60.00080 * 1 2 3 32 32 H 1.08994 * 109.47371 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.58704 * 294.40131 * 4 2 1 34 34 H 1.08995 * 109.59063 * 54.69224 * 4 2 1 35 35 H 0.97001 * 120.00108 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.58692 * 173.39739 * 14 5 4 37 37 H 1.09002 * 109.58925 * 293.68560 * 14 5 4 38 38 H 1.09001 * 109.49946 * 65.31807 * 15 14 5 39 39 H 1.09003 * 109.50081 * 185.38174 * 15 14 5 40 40 H 0.96991 * 119.99596 * 25.00621 * 18 16 2 41 41 H 1.09003 * 115.55171 * 149.21564 * 22 21 19 42 42 H 1.08999 * 117.50054 * 0.02562 * 23 22 21 43 43 H 1.09002 * 117.49884 * 145.02133 * 23 22 21 44 44 H 1.08998 * 117.49864 * 214.97940 * 24 22 21 45 45 H 1.09002 * 117.49805 * 359.97438 * 24 22 21 46 46 H 1.09000 * 109.51955 * 57.02162 * 25 21 19 47 47 H 1.09000 * 109.52133 * 177.21220 * 25 21 19 48 48 H 1.09004 * 109.47840 * 182.40980 * 26 25 21 49 49 H 1.08993 * 109.48537 * 62.37110 * 26 25 21 50 50 H 1.08996 * 109.48019 * 178.85867 * 28 27 26 51 51 H 1.09003 * 109.47876 * 58.82754 * 28 27 26 52 52 H 1.08997 * 109.52412 * 297.70374 * 29 28 27 53 53 H 1.09001 * 109.57064 * 177.54816 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7234 1.2499 5 7 3.5046 -0.8281 1.1703 6 6 4.2932 -0.3770 2.1949 7 1 5.2787 0.0127 1.9867 8 6 3.8258 -0.4205 3.5013 9 7 2.7147 -1.0681 3.7815 10 14 4.7737 0.4401 4.8616 11 1 4.2871 1.8365 4.9969 12 1 4.5672 -0.2824 6.1424 13 1 6.2204 0.4504 4.5267 14 6 4.1059 -1.4256 -0.0298 15 6 3.5715 -0.6943 -1.2653 16 6 2.0415 -0.7230 -1.2481 17 1 1.6978 -1.7574 -1.2350 18 7 1.5272 -0.0533 -2.4453 19 6 1.3998 -0.7388 -3.5987 20 8 1.6308 -1.9291 -3.6254 21 6 0.9703 -0.0262 -4.8551 22 6 2.0773 0.9289 -5.3058 23 6 3.3799 0.9294 -4.5033 24 6 2.4097 2.1078 -4.3888 25 6 -0.3125 0.7653 -4.5823 26 6 -1.4333 -0.2078 -4.2077 27 8 -1.6136 -1.1541 -5.2634 28 6 -0.4613 -1.9558 -5.5313 29 6 0.6986 -1.0529 -5.9590 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.7632 -0.1576 2.1390 34 1 1.6037 -1.7205 1.2996 35 1 2.3879 -1.0983 4.6943 36 1 5.1901 -1.3230 0.0150 37 1 3.8407 -2.4815 -0.0844 38 1 3.9161 0.3397 -1.2534 39 1 3.9350 -1.1886 -2.1662 40 1 1.2785 0.8835 -2.4078 41 1 2.1485 1.0921 -6.3812 42 1 3.4485 0.2489 -3.6546 43 1 4.3082 1.0932 -5.0507 44 1 2.7000 3.0463 -4.8610 45 1 1.8394 2.2030 -3.4648 46 1 -0.1436 1.4604 -3.7599 47 1 -0.5955 1.3199 -5.4770 48 1 -2.3594 0.3462 -4.0541 49 1 -1.1673 -0.7330 -3.2904 50 1 -0.6871 -2.6610 -6.3311 51 1 -0.1826 -2.5038 -4.6312 52 1 0.4360 -0.5350 -6.8815 53 1 1.5909 -1.6573 -6.1220 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942531018.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:40 Heat of formation + Delta-G solvation = -59.990271 kcal Electronic energy + Delta-G solvation = -32272.999954 eV Core-core repulsion = 28337.892374 eV Total energy + Delta-G solvation = -3935.107580 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.38896 -40.01072 -38.79233 -38.02965 -36.18060 -34.06894 -33.86333 -33.51485 -32.07037 -31.06266 -27.58166 -27.39348 -26.58707 -24.76186 -24.51528 -23.12708 -22.66085 -22.36429 -22.03906 -21.25253 -20.04442 -18.75589 -17.87630 -17.47387 -17.18758 -16.98052 -16.77279 -16.36253 -15.75913 -15.69196 -15.58543 -15.39604 -15.33813 -14.70598 -14.67794 -14.56281 -14.22390 -14.14007 -13.54771 -13.35594 -13.29765 -13.20633 -12.90915 -12.88620 -12.80267 -12.57579 -12.46461 -12.34105 -12.22988 -12.09601 -11.99271 -11.86117 -11.76310 -11.58896 -11.47606 -11.36836 -11.22116 -10.94380 -10.58595 -10.57646 -10.39198 -9.92863 -8.67299 -7.87714 -5.39696 1.47583 1.48066 1.57406 1.62887 2.13000 2.49775 2.82262 2.93463 3.28279 3.39331 3.58785 3.61641 3.71310 3.75993 3.90250 3.98714 4.01708 4.07022 4.14942 4.18343 4.29693 4.32205 4.33782 4.54050 4.56015 4.61176 4.65776 4.66420 4.71387 4.78496 4.82126 4.82774 4.89111 4.92042 4.95402 5.03307 5.06281 5.06304 5.07955 5.13228 5.17246 5.25128 5.25733 5.29450 5.31822 5.50871 5.56309 5.63711 5.74850 6.21158 6.39807 6.57031 7.14324 7.26148 7.81805 8.35807 9.18092 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019478 B = 0.003295 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.210821 B = 8495.511370 C = 8970.661660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.107 4.107 3 H 0.073 0.927 4 C 0.190 3.810 5 N -0.609 5.609 6 C -0.265 4.265 7 H 0.067 0.933 8 C -0.046 4.046 9 N -0.936 5.936 10 Si 0.970 3.030 11 H -0.281 1.281 12 H -0.296 1.296 13 H -0.270 1.270 14 C 0.144 3.856 15 C -0.121 4.121 16 C 0.170 3.830 17 H 0.052 0.948 18 N -0.708 5.708 19 C 0.524 3.476 20 O -0.577 6.577 21 C -0.045 4.045 22 C -0.135 4.135 23 C -0.207 4.207 24 C -0.160 4.160 25 C -0.136 4.136 26 C 0.050 3.950 27 O -0.394 6.394 28 C 0.051 3.949 29 C -0.122 4.122 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.040 0.960 33 H 0.065 0.935 34 H -0.012 1.012 35 H 0.251 0.749 36 H 0.057 0.943 37 H 0.003 0.997 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.406 0.594 41 H 0.135 0.865 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.119 0.881 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.118 0.882 49 H 0.030 0.970 50 H 0.106 0.894 51 H 0.039 0.961 52 H 0.100 0.900 53 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.589 8.775 -21.187 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.128 4.128 3 H 0.091 0.909 4 C 0.063 3.937 5 N -0.332 5.332 6 C -0.395 4.395 7 H 0.084 0.916 8 C -0.242 4.242 9 N -0.582 5.582 10 Si 0.798 3.202 11 H -0.208 1.208 12 H -0.222 1.222 13 H -0.195 1.195 14 C 0.018 3.982 15 C -0.161 4.161 16 C 0.065 3.935 17 H 0.070 0.930 18 N -0.360 5.360 19 C 0.312 3.688 20 O -0.456 6.456 21 C -0.048 4.048 22 C -0.154 4.154 23 C -0.244 4.244 24 C -0.197 4.197 25 C -0.174 4.174 26 C -0.027 4.027 27 O -0.313 6.313 28 C -0.026 4.026 29 C -0.160 4.160 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.006 0.994 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.021 0.979 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.244 0.756 41 H 0.152 0.848 42 H 0.101 0.899 43 H 0.120 0.880 44 H 0.137 0.863 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.124 0.876 48 H 0.136 0.864 49 H 0.048 0.952 50 H 0.124 0.876 51 H 0.057 0.943 52 H 0.119 0.881 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.635 7.885 -21.134 23.513 hybrid contribution 0.839 0.007 1.550 1.763 sum -5.797 7.892 -19.584 21.896 Atomic orbital electron populations 1.21672 0.93756 1.01320 1.02213 1.21895 0.96380 0.99852 0.94667 0.90869 1.20605 0.82495 0.95459 0.95092 1.44300 1.02233 1.69726 1.16940 1.19522 0.99731 1.34047 0.86216 0.91568 1.25909 0.98980 0.99809 0.99458 1.70134 1.24311 1.44827 1.18882 0.85225 0.78700 0.77883 0.78357 1.20761 1.22241 1.19481 1.20965 0.96824 0.93741 0.86682 1.22175 0.95410 1.01075 0.97458 1.20615 0.93061 0.95962 0.83885 0.92964 1.46257 1.65629 1.14730 1.09423 1.20913 0.75655 0.86912 0.85311 1.90664 1.51967 1.16897 1.86066 1.20508 0.96537 0.95775 0.92020 1.22223 0.94685 0.99144 0.99304 1.23338 0.94773 1.03152 1.03174 1.23106 1.02082 0.93473 1.01061 1.22299 0.92170 0.97948 1.04951 1.22782 1.00537 0.90391 0.88976 1.87885 1.36804 1.51621 1.55031 1.22745 0.85598 0.93197 1.01048 1.21990 0.99118 0.97175 0.97731 0.92378 0.90733 0.94126 0.91646 0.99422 0.94026 0.92464 0.97873 0.91388 0.92328 0.75558 0.84763 0.89940 0.87954 0.86321 0.88830 0.89006 0.87552 0.86386 0.95208 0.87613 0.94284 0.88119 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 9.03 71.98 0.65 -3.22 16 2 C -0.11 -3.78 2.46 -10.72 -0.03 -3.81 16 3 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 4 C 0.19 9.06 4.54 86.36 0.39 9.45 16 5 N -0.61 -30.76 2.99 -699.09 -2.09 -32.85 16 6 C -0.27 -14.51 9.59 84.03 0.81 -13.70 16 7 H 0.07 3.53 7.85 -2.91 -0.02 3.51 16 8 C -0.05 -2.55 5.07 84.86 0.43 -2.12 16 9 N -0.94 -54.90 10.97 21.65 0.24 -54.67 16 10 Si 0.97 44.32 29.56 68.60 2.03 46.35 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 14 C 0.14 6.29 6.52 86.36 0.56 6.85 16 15 C -0.12 -4.28 4.67 30.67 0.14 -4.14 16 16 C 0.17 5.69 1.92 45.02 0.09 5.78 16 17 H 0.05 2.10 7.52 -2.39 -0.02 2.09 16 18 N -0.71 -17.87 2.91 -442.40 -1.29 -19.16 16 19 C 0.52 13.87 3.34 87.65 0.29 14.16 16 20 O -0.58 -20.34 13.83 -3.01 -0.04 -20.38 16 21 C -0.05 -0.84 0.54 -52.81 -0.03 -0.87 16 22 C -0.14 -2.04 5.24 -10.79 -0.06 -2.09 16 23 C -0.21 -3.91 9.53 30.62 0.29 -3.62 16 24 C -0.16 -2.17 9.31 30.62 0.29 -1.89 16 25 C -0.14 -1.97 4.52 30.69 0.14 -1.83 16 26 C 0.05 0.93 6.62 72.01 0.48 1.41 16 27 O -0.39 -8.99 10.77 -148.98 -1.60 -10.60 16 28 C 0.05 1.14 6.56 72.01 0.47 1.62 16 29 C -0.12 -2.33 4.51 30.68 0.14 -2.19 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.68 7.36 -2.39 -0.02 1.66 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 3.51 6.04 -2.39 -0.01 3.50 16 34 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 35 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 36 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 37 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.06 2.02 7.50 -2.39 -0.02 2.00 16 40 H 0.41 8.15 4.87 -92.71 -0.45 7.70 16 41 H 0.13 1.53 8.07 -2.39 -0.02 1.52 16 42 H 0.08 2.04 4.08 -2.39 -0.01 2.03 16 43 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.09 1.24 5.27 -2.39 -0.01 1.23 16 46 H 0.09 1.06 6.07 -2.39 -0.01 1.04 16 47 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.03 0.69 7.38 -2.39 -0.02 0.67 16 50 H 0.11 2.01 8.14 -2.39 -0.02 2.00 16 51 H 0.04 1.13 6.12 -2.39 -0.01 1.12 16 52 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 53 H 0.07 1.55 7.92 -2.39 -0.02 1.53 16 Total: -1.00 -68.34 386.31 2.75 -65.59 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.45 Total: 25.92 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: 5.05 Total: -0.21 kcal Atomic # 7 Polarization: -103.54 SS G_CDS: -3.14 Total: -106.68 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -1.65 Total: -30.98 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -68.34 2.75 -65.59 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942531018.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.601 kcal (2) G-P(sol) polarization free energy of solvation -68.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds