Wall clock time and date at job start Tue Mar 31 2020 21:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.52587 * 2 1 4 4 C 1.53193 * 109.49799 * 120.08791 * 2 1 3 5 5 N 1.46926 * 108.77689 * 174.58453 * 4 2 1 6 6 C 1.36941 * 120.63019 * 126.40736 * 5 4 2 7 7 H 1.08001 * 119.99987 * 207.66510 * 6 5 4 8 8 C 1.38806 * 120.00015 * 27.66721 * 6 5 4 9 9 N 1.31622 * 120.00245 * 17.36579 * 8 6 5 10 10 Si 1.86803 * 120.00101 * 197.36586 * 8 6 5 11 11 H 1.48495 * 109.47111 * 89.99981 * 10 8 6 12 12 H 1.48505 * 109.47124 * 210.00052 * 10 8 6 13 13 H 1.48498 * 109.47069 * 330.00025 * 10 8 6 14 14 C 1.46929 * 118.74069 * 306.39114 * 5 4 2 15 15 C 1.53195 * 108.77414 * 53.60622 * 14 5 4 16 16 C 1.53040 * 109.49622 * 239.92182 * 2 1 3 17 17 H 1.09003 * 109.45249 * 58.67297 * 16 2 1 18 18 N 1.46504 * 109.46367 * 298.70336 * 16 2 1 19 19 C 1.34771 * 120.00201 * 154.93263 * 18 16 2 20 20 O 1.21283 * 119.99991 * 0.02562 * 19 18 16 21 21 C 1.50695 * 120.00182 * 180.02562 * 19 18 16 22 22 C 1.53869 * 113.60195 * 82.41435 * 21 19 18 23 23 C 1.53310 * 86.94543 * 139.66399 * 22 21 19 24 24 C 1.53314 * 87.55669 * 334.82282 * 23 22 21 25 25 C 1.52831 * 113.63232 * 89.59746 * 23 22 21 26 26 C 1.53275 * 108.87687 * 184.10272 * 25 23 22 27 27 O 1.42895 * 109.32247 * 304.69315 * 26 25 23 28 28 C 1.42890 * 114.35271 * 63.01963 * 27 26 25 29 29 C 1.52839 * 113.63087 * 220.05367 * 23 22 21 30 30 H 1.08998 * 109.46992 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46947 * 300.07415 * 1 2 3 32 32 H 1.08996 * 109.46749 * 60.07991 * 1 2 3 33 33 H 1.09001 * 109.58917 * 54.79673 * 4 2 1 34 34 H 1.09004 * 109.58307 * 294.37164 * 4 2 1 35 35 H 0.97000 * 120.00384 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.58512 * 293.82034 * 14 5 4 37 37 H 1.08996 * 109.58802 * 173.39110 * 14 5 4 38 38 H 1.09000 * 109.49254 * 185.41634 * 15 14 5 39 39 H 1.08998 * 109.49810 * 65.31959 * 15 14 5 40 40 H 0.97003 * 119.99692 * 334.93031 * 18 16 2 41 41 H 1.09002 * 112.89560 * 311.20769 * 21 19 18 42 42 H 1.09003 * 113.63073 * 254.17415 * 22 21 19 43 43 H 1.08993 * 113.63299 * 25.14585 * 22 21 19 44 44 H 1.08997 * 113.64192 * 270.66786 * 24 23 22 45 45 H 1.08999 * 113.72061 * 139.70017 * 24 23 22 46 46 H 1.08995 * 109.56984 * 303.92290 * 25 23 22 47 47 H 1.09007 * 109.56860 * 64.28444 * 25 23 22 48 48 H 1.09005 * 109.49251 * 184.74313 * 26 25 23 49 49 H 1.08998 * 109.51985 * 64.66879 * 26 25 23 50 50 H 1.09002 * 109.49143 * 177.02682 * 28 27 26 51 51 H 1.08992 * 109.52124 * 56.95338 * 28 27 26 52 52 H 1.09002 * 109.56609 * 295.71556 * 29 23 22 53 53 H 1.08999 * 109.57145 * 55.95613 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7240 1.2495 5 7 3.5046 -0.8293 1.1695 6 6 4.2936 -0.3795 2.1944 7 1 5.2990 -0.0403 1.9931 8 6 3.8012 -0.3596 3.4920 9 7 2.7376 -1.0697 3.8033 10 14 4.6481 0.6749 4.7967 11 1 4.0516 2.0347 4.8142 12 1 4.4689 0.0386 6.1264 13 1 6.0969 0.7739 4.4864 14 6 4.1053 -1.4268 -0.0309 15 6 3.5709 -0.6950 -1.2661 16 6 2.0408 -0.7230 -1.2484 17 1 1.6582 -0.2242 -2.1389 18 7 1.5783 -2.1131 -1.2310 19 6 1.4489 -2.7947 -2.3864 20 8 1.7157 -2.2576 -3.4405 21 6 0.9727 -4.2243 -2.3685 22 6 -0.5576 -4.3630 -2.2866 23 6 -0.4251 -5.5124 -3.2924 24 6 0.8788 -4.8601 -3.7665 25 6 -0.2237 -6.8788 -2.6382 26 6 -0.0025 -7.9261 -3.7353 27 8 -1.0960 -7.8862 -4.6544 28 6 -1.2308 -6.6489 -5.3564 29 6 -1.5240 -5.5266 -4.3546 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5150 0.8893 32 1 -0.3633 0.5126 -0.8907 33 1 1.6053 -1.7218 1.2979 34 1 1.7638 -0.1581 2.1389 35 1 2.3933 -1.0556 4.7101 36 1 3.8376 -2.4819 -0.0870 37 1 5.1896 -1.3247 0.0136 38 1 3.9335 -1.1897 -2.1672 39 1 3.9160 0.3389 -1.2541 40 1 1.3653 -2.5428 -0.3878 41 1 1.5060 -4.8400 -1.6441 42 1 -0.9159 -4.6788 -1.3068 43 1 -1.0960 -3.4998 -2.6777 44 1 0.7385 -4.1346 -4.5679 45 1 1.6753 -5.5740 -3.9763 46 1 0.6477 -6.8456 -1.9843 47 1 -1.1085 -7.1396 -2.0575 48 1 0.0584 -8.9170 -3.2853 49 1 0.9255 -7.7091 -4.2642 50 1 -2.0514 -6.7231 -6.0699 51 1 -0.3051 -6.4292 -5.8882 52 1 -2.4888 -5.7043 -3.8794 53 1 -1.5434 -4.5679 -4.8729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944151986.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:10 Heat of formation + Delta-G solvation = -74.316376 kcal Electronic energy + Delta-G solvation = -30941.901736 eV Core-core repulsion = 27006.172929 eV Total energy + Delta-G solvation = -3935.728807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.02561 -40.73176 -39.17961 -37.85247 -35.89214 -33.69759 -33.53125 -32.27174 -32.00001 -31.14303 -27.54272 -27.30920 -26.93531 -25.90561 -24.64477 -23.91486 -23.07748 -22.54311 -21.09978 -20.08446 -19.17004 -18.74136 -18.28977 -17.03337 -16.92556 -16.85070 -16.61523 -16.36011 -15.93766 -15.76376 -15.59520 -15.31456 -14.99428 -14.81653 -14.74426 -14.59590 -14.29255 -14.11425 -13.59683 -13.52767 -13.10402 -13.09066 -12.95061 -12.79517 -12.72223 -12.55687 -12.51440 -12.47961 -12.21056 -12.18110 -12.05061 -11.80135 -11.70294 -11.45483 -11.43525 -11.30911 -11.12845 -10.98794 -10.61949 -10.54114 -10.25475 -9.91447 -8.66430 -7.87349 -5.31193 1.46766 1.49047 1.56551 1.70311 2.34115 2.51300 3.01258 3.27045 3.41613 3.53128 3.58107 3.67316 3.72421 3.81932 4.00227 4.06457 4.13742 4.18043 4.21163 4.30411 4.34035 4.41863 4.51629 4.58008 4.58116 4.67657 4.73850 4.74381 4.79363 4.81207 4.83789 4.87085 4.93816 4.95865 4.98988 5.02875 5.09162 5.11091 5.14914 5.17065 5.20760 5.29580 5.34687 5.40280 5.49564 5.52273 5.64738 5.67899 5.77104 6.32092 6.39806 6.66506 7.16184 7.33227 7.86113 8.37329 9.18113 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020340 B = 0.002592 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.283355 B =10800.846003 C =11160.101755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.116 4.116 3 H 0.067 0.933 4 C 0.190 3.810 5 N -0.608 5.608 6 C -0.264 4.264 7 H 0.061 0.939 8 C -0.043 4.043 9 N -0.927 5.927 10 Si 0.961 3.039 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.273 1.273 14 C 0.151 3.849 15 C -0.134 4.134 16 C 0.167 3.833 17 H 0.073 0.927 18 N -0.706 5.706 19 C 0.521 3.479 20 O -0.584 6.584 21 C -0.136 4.136 22 C -0.105 4.105 23 C -0.075 4.075 24 C -0.104 4.104 25 C -0.130 4.130 26 C 0.058 3.942 27 O -0.403 6.403 28 C 0.060 3.940 29 C -0.136 4.136 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.009 0.991 34 H 0.056 0.944 35 H 0.250 0.750 36 H 0.017 0.983 37 H 0.045 0.955 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.405 0.595 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.077 0.923 48 H 0.105 0.895 49 H 0.054 0.946 50 H 0.103 0.897 51 H 0.052 0.948 52 H 0.074 0.926 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.490 -10.172 -14.745 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.136 4.136 3 H 0.085 0.915 4 C 0.064 3.936 5 N -0.331 5.331 6 C -0.394 4.394 7 H 0.078 0.922 8 C -0.239 4.239 9 N -0.573 5.573 10 Si 0.790 3.210 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.198 1.198 14 C 0.025 3.975 15 C -0.174 4.174 16 C 0.062 3.938 17 H 0.091 0.909 18 N -0.357 5.357 19 C 0.309 3.691 20 O -0.465 6.465 21 C -0.157 4.157 22 C -0.143 4.143 23 C -0.075 4.075 24 C -0.142 4.142 25 C -0.167 4.167 26 C -0.018 4.018 27 O -0.322 6.322 28 C -0.017 4.017 29 C -0.173 4.173 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.064 0.936 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.241 0.759 41 H 0.141 0.859 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.094 0.906 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.123 0.877 49 H 0.072 0.928 50 H 0.121 0.879 51 H 0.070 0.930 52 H 0.092 0.908 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.463 -9.957 -15.345 20.595 hybrid contribution 0.803 0.824 1.492 1.884 sum -8.660 -9.134 -13.853 18.717 Atomic orbital electron populations 1.21642 0.93582 1.02009 1.01608 1.21930 0.96562 0.99593 0.95556 0.91465 1.20595 0.82298 0.96015 0.94698 1.44288 1.02342 1.69980 1.16479 1.19441 0.97974 1.35170 0.86791 0.92175 1.25656 0.99470 1.00190 0.98628 1.70137 1.26856 1.41365 1.18910 0.85364 0.78528 0.78559 0.78555 1.21315 1.22093 1.19833 1.20878 0.96103 0.94210 0.86268 1.22239 0.96092 1.01102 0.97999 1.20689 0.93303 0.82086 0.97749 0.90907 1.46159 1.66567 1.13605 1.09343 1.20948 0.76083 0.89052 0.82969 1.90628 1.52535 1.71359 1.31997 1.22839 0.99323 0.91814 1.01738 1.22859 0.92253 0.98479 1.00727 1.21458 0.95362 0.94572 0.96086 1.22839 0.97583 0.98799 0.94951 1.21987 1.03527 0.92875 0.98337 1.22718 0.89023 1.00122 0.89976 1.87861 1.51535 1.35792 1.57036 1.22672 1.01904 0.83372 0.93735 1.22086 0.98593 0.99669 0.96975 0.92369 0.92767 0.92009 0.97285 0.92590 0.94046 0.96490 0.93605 0.92200 0.91755 0.75901 0.85882 0.89363 0.90126 0.90151 0.90634 0.89711 0.90411 0.87685 0.92818 0.87889 0.93002 0.90766 0.90548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.05 71.98 0.65 -3.11 16 2 C -0.12 -4.05 2.67 -10.72 -0.03 -4.08 16 3 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.19 8.33 4.30 86.36 0.37 8.70 16 5 N -0.61 -29.13 3.00 -699.08 -2.09 -31.22 16 6 C -0.26 -14.13 9.59 84.03 0.81 -13.33 16 7 H 0.06 3.22 7.89 -2.91 -0.02 3.19 16 8 C -0.04 -2.34 4.91 84.86 0.42 -1.93 16 9 N -0.93 -52.09 11.19 21.65 0.24 -51.85 16 10 Si 0.96 43.89 29.59 68.60 2.03 45.92 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 14 C 0.15 6.20 6.26 86.36 0.54 6.74 16 15 C -0.13 -4.77 5.77 30.67 0.18 -4.60 16 16 C 0.17 5.51 2.21 45.02 0.10 5.61 16 17 H 0.07 2.44 7.58 -2.39 -0.02 2.43 16 18 N -0.71 -21.00 3.60 -442.40 -1.59 -22.59 16 19 C 0.52 15.03 7.32 87.66 0.64 15.67 16 20 O -0.58 -20.70 15.56 -3.04 -0.05 -20.75 16 21 C -0.14 -2.87 3.80 -10.96 -0.04 -2.91 16 22 C -0.11 -1.86 6.78 30.99 0.21 -1.65 16 23 C -0.07 -1.19 0.77 -52.08 -0.04 -1.23 16 24 C -0.10 -2.02 6.36 30.99 0.20 -1.82 16 25 C -0.13 -1.83 5.23 30.63 0.16 -1.67 16 26 C 0.06 0.84 6.78 72.07 0.49 1.33 16 27 O -0.40 -7.36 10.72 -148.98 -1.60 -8.96 16 28 C 0.06 0.89 6.78 72.07 0.49 1.38 16 29 C -0.14 -2.04 5.33 30.63 0.16 -1.88 16 30 H 0.06 1.58 7.54 -2.39 -0.02 1.56 16 31 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.01 0.41 6.64 -2.39 -0.02 0.40 16 34 H 0.06 2.86 6.04 -2.38 -0.01 2.85 16 35 H 0.25 13.69 8.31 -92.71 -0.77 12.92 16 36 H 0.02 0.70 7.74 -2.39 -0.02 0.68 16 37 H 0.05 1.90 7.93 -2.39 -0.02 1.88 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 40 H 0.40 11.96 6.73 -92.71 -0.62 11.33 16 41 H 0.12 2.32 7.65 -2.39 -0.02 2.30 16 42 H 0.09 1.38 8.09 -2.39 -0.02 1.37 16 43 H 0.08 1.55 8.05 -2.39 -0.02 1.53 16 44 H 0.08 1.85 7.31 -2.39 -0.02 1.84 16 45 H 0.07 1.36 7.65 -2.39 -0.02 1.34 16 46 H 0.08 1.09 7.35 -2.39 -0.02 1.08 16 47 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 48 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 49 H 0.05 0.74 7.68 -2.39 -0.02 0.73 16 50 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.05 0.76 8.12 -2.39 -0.02 0.74 16 52 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 53 H 0.08 1.15 8.04 -2.39 -0.02 1.13 16 Total: -1.00 -63.28 398.49 2.50 -60.78 By element: Atomic # 1 Polarization: 27.18 SS G_CDS: 0.26 Total: 27.44 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 5.30 Total: 1.22 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -3.44 Total: -105.66 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -1.64 Total: -29.70 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -63.28 2.50 -60.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944151986.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.539 kcal (2) G-P(sol) polarization free energy of solvation -63.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds