Wall clock time and date at job start Tue Mar 31 2020 21:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.52139 * 2 1 4 4 C 1.53188 * 109.49886 * 239.92219 * 2 1 3 5 5 N 1.46923 * 108.77602 * 185.41516 * 4 2 1 6 6 C 1.36936 * 120.63033 * 233.58750 * 5 4 2 7 7 H 1.07998 * 120.00130 * 27.69528 * 6 5 4 8 8 C 1.38814 * 119.99853 * 207.69467 * 6 5 4 9 9 N 1.31620 * 120.00353 * 17.35793 * 8 6 5 10 10 Si 1.86809 * 119.99831 * 197.35415 * 8 6 5 11 11 H 1.48498 * 109.47021 * 90.00225 * 10 8 6 12 12 H 1.48500 * 109.46868 * 210.00123 * 10 8 6 13 13 H 1.48495 * 109.47207 * 330.00097 * 10 8 6 14 14 C 1.46930 * 118.74025 * 53.60652 * 5 4 2 15 15 C 1.53191 * 108.77255 * 306.39035 * 14 5 4 16 16 C 1.53041 * 109.31214 * 54.63983 * 15 14 5 17 17 H 1.08998 * 109.45966 * 178.62560 * 16 15 14 18 18 N 1.46496 * 109.46470 * 58.64769 * 16 15 14 19 19 C 1.34784 * 119.99850 * 85.00177 * 18 16 15 20 20 O 1.21283 * 120.00014 * 0.02562 * 19 18 16 21 21 C 1.50696 * 119.99971 * 180.02562 * 19 18 16 22 22 C 1.53863 * 113.60103 * 180.02562 * 21 19 18 23 23 C 1.53304 * 86.95407 * 139.66222 * 22 21 19 24 24 C 1.53333 * 87.54697 * 334.81971 * 23 22 21 25 25 C 1.52835 * 113.65068 * 89.57923 * 23 22 21 26 26 C 1.53279 * 108.96761 * 184.26460 * 25 23 22 27 27 O 1.42894 * 109.32228 * 304.63617 * 26 25 23 28 28 C 1.42883 * 114.38524 * 62.97861 * 27 26 25 29 29 C 1.53095 * 113.83409 * 220.02081 * 23 22 21 30 30 H 1.09001 * 109.47315 * 299.91594 * 1 2 3 31 31 H 1.09004 * 109.46942 * 59.91349 * 1 2 3 32 32 H 1.08999 * 109.47193 * 179.91230 * 1 2 3 33 33 H 1.09005 * 109.58827 * 65.62434 * 4 2 1 34 34 H 1.08998 * 109.58844 * 305.20031 * 4 2 1 35 35 H 0.96993 * 120.00397 * 180.02562 * 9 8 6 36 36 H 1.08997 * 109.58501 * 186.60576 * 14 5 4 37 37 H 1.08998 * 109.70189 * 66.25201 * 14 5 4 38 38 H 1.08992 * 109.50367 * 294.68575 * 15 14 5 39 39 H 1.09003 * 109.52291 * 174.59965 * 15 14 5 40 40 H 0.96998 * 120.00621 * 265.00377 * 18 16 15 41 41 H 1.08998 * 112.89765 * 48.78755 * 21 19 18 42 42 H 1.09001 * 113.63501 * 25.14666 * 22 21 19 43 43 H 1.09002 * 113.63408 * 254.17984 * 22 21 19 44 44 H 1.09000 * 113.63554 * 139.68955 * 24 23 22 45 45 H 1.08993 * 113.63895 * 270.66830 * 24 23 22 46 46 H 1.08991 * 109.57424 * 64.38470 * 25 23 22 47 47 H 1.08999 * 109.57040 * 304.13949 * 25 23 22 48 48 H 1.09007 * 109.49029 * 64.59003 * 26 25 23 49 49 H 1.09004 * 109.49401 * 184.67703 * 26 25 23 50 50 H 1.09003 * 109.49272 * 56.98133 * 28 27 26 51 51 H 1.09005 * 109.49393 * 177.05984 * 28 27 26 52 52 H 1.08996 * 109.53787 * 56.01835 * 29 23 22 53 53 H 1.08997 * 109.64842 * 295.74897 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0414 -0.7237 -1.2496 5 7 3.5046 -0.8291 -1.1695 6 6 4.2936 -0.3792 -2.1944 7 1 3.9468 0.4207 -2.8317 8 6 5.5391 -0.9513 -2.4140 9 7 5.8280 -2.1220 -1.8863 10 14 6.8055 -0.0596 -3.4586 11 1 7.6357 0.8144 -2.5913 12 1 7.6754 -1.0534 -4.1374 13 1 6.1120 0.7689 -4.4772 14 6 4.1053 -1.4267 0.0308 15 6 3.5709 -0.6950 1.2660 16 6 2.0408 -0.7231 1.2484 17 1 1.6582 -0.2243 2.1388 18 7 1.5783 -2.1131 1.2307 19 6 1.4488 -2.7949 2.3861 20 8 1.7148 -2.2576 3.4404 21 6 0.9736 -4.2249 2.3679 22 6 0.8791 -4.8604 3.7660 23 6 -0.4239 -5.5139 3.2911 24 6 -0.5564 -4.3645 2.2849 25 6 -0.2216 -6.8801 2.6366 26 6 -1.5696 -7.3845 2.1095 27 8 -2.5196 -7.3977 3.1768 28 6 -2.8045 -6.1110 3.7289 29 6 -1.5288 -5.5319 4.3506 30 1 -0.3634 0.5125 0.8907 31 1 -0.3633 0.5152 -0.8892 32 1 -0.3633 -1.0276 -0.0016 33 1 1.7638 -0.1578 -2.1389 34 1 1.6053 -1.7215 -1.2981 35 1 6.6984 -2.5216 -2.0395 36 1 5.1896 -1.3246 -0.0137 37 1 3.8398 -2.4823 0.0879 38 1 3.9158 0.3388 1.2542 39 1 3.9334 -1.1892 2.1674 40 1 1.3653 -2.5427 0.3876 41 1 1.5076 -4.8401 1.6437 42 1 0.7375 -4.1350 4.5671 43 1 1.6751 -5.5749 3.9759 44 1 -0.9138 -4.6807 1.3049 45 1 -1.0958 -3.5017 2.6755 46 1 0.1691 -7.5831 3.3722 47 1 0.4825 -6.7881 1.8096 48 1 -1.9211 -6.7230 1.3177 49 1 -1.4513 -8.3938 1.7152 50 1 -3.1586 -5.4471 2.9402 51 1 -3.5725 -6.2064 4.4965 52 1 -1.7196 -4.5157 4.6957 53 1 -1.2193 -6.1512 5.1925 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944151987.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:14 Heat of formation + Delta-G solvation = -74.793509 kcal Electronic energy + Delta-G solvation = -30995.380665 eV Core-core repulsion = 27059.631168 eV Total energy + Delta-G solvation = -3935.749497 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.02287 -40.73175 -39.18764 -37.84393 -35.96180 -33.94061 -32.89880 -32.35389 -32.05025 -31.44153 -27.44469 -27.36844 -26.80658 -25.93492 -24.62619 -23.89338 -23.08373 -22.66084 -21.06537 -20.07442 -19.20349 -18.71079 -18.32457 -16.96887 -16.91838 -16.88252 -16.64610 -16.32928 -15.94008 -15.75427 -15.56940 -15.40186 -15.12327 -14.80937 -14.77508 -14.49609 -14.28380 -14.08937 -13.53884 -13.44640 -13.18436 -13.12310 -12.98518 -12.70490 -12.64862 -12.57049 -12.54391 -12.38120 -12.20908 -12.17420 -12.13684 -11.94913 -11.67055 -11.46662 -11.42286 -11.31154 -11.11264 -10.99261 -10.59395 -10.52952 -10.26674 -9.93062 -8.67261 -7.87388 -5.31985 1.45732 1.48303 1.55791 1.69691 2.34289 2.50772 3.02801 3.27551 3.40502 3.53073 3.57762 3.67406 3.70398 3.79368 4.00839 4.08605 4.12992 4.13613 4.19535 4.31012 4.41415 4.41913 4.51111 4.59934 4.60424 4.66689 4.71940 4.77120 4.78082 4.81800 4.84320 4.85866 4.92175 4.98691 5.00303 5.01764 5.10728 5.12510 5.13259 5.19558 5.20500 5.31047 5.40820 5.43054 5.49006 5.52005 5.62198 5.66791 5.74362 6.34032 6.38354 6.66253 7.14482 7.33949 7.86207 8.37093 9.18195 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017702 B = 0.002716 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1581.369373 B =10308.643999 C =10748.526039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 H 0.073 0.927 4 C 0.151 3.849 5 N -0.607 5.607 6 C -0.260 4.260 7 H 0.068 0.932 8 C -0.049 4.049 9 N -0.932 5.932 10 Si 0.962 3.038 11 H -0.290 1.290 12 H -0.296 1.296 13 H -0.267 1.267 14 C 0.190 3.810 15 C -0.143 4.143 16 C 0.167 3.833 17 H 0.072 0.928 18 N -0.704 5.704 19 C 0.520 3.480 20 O -0.587 6.587 21 C -0.137 4.137 22 C -0.106 4.106 23 C -0.074 4.074 24 C -0.102 4.102 25 C -0.131 4.131 26 C 0.060 3.940 27 O -0.404 6.404 28 C 0.061 3.939 29 C -0.136 4.136 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.024 0.976 35 H 0.248 0.752 36 H 0.045 0.955 37 H 0.003 0.997 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.405 0.595 41 H 0.121 0.879 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.084 0.916 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.060 0.940 49 H 0.104 0.896 50 H 0.058 0.942 51 H 0.102 0.898 52 H 0.077 0.923 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.267 -7.092 8.679 21.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.127 4.127 3 H 0.092 0.908 4 C 0.025 3.975 5 N -0.330 5.330 6 C -0.390 4.390 7 H 0.086 0.914 8 C -0.245 4.245 9 N -0.578 5.578 10 Si 0.791 3.209 11 H -0.217 1.217 12 H -0.223 1.223 13 H -0.191 1.191 14 C 0.064 3.936 15 C -0.184 4.184 16 C 0.062 3.938 17 H 0.090 0.910 18 N -0.355 5.355 19 C 0.308 3.692 20 O -0.468 6.468 21 C -0.158 4.158 22 C -0.144 4.144 23 C -0.074 4.074 24 C -0.140 4.140 25 C -0.168 4.168 26 C -0.017 4.017 27 O -0.323 6.323 28 C -0.016 4.016 29 C -0.173 4.173 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.063 0.937 37 H 0.021 0.979 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.242 0.758 41 H 0.139 0.861 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.091 0.909 47 H 0.102 0.898 48 H 0.078 0.922 49 H 0.122 0.878 50 H 0.076 0.924 51 H 0.120 0.880 52 H 0.096 0.904 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -18.032 -6.948 9.421 21.498 hybrid contribution 1.660 0.514 -0.892 1.953 sum -16.372 -6.434 8.528 19.549 Atomic orbital electron populations 1.21679 0.92637 1.02373 1.02250 1.21791 0.96968 0.99521 0.94416 0.90845 1.21071 0.83355 0.97036 0.95989 1.44268 1.01128 1.71533 1.16100 1.19502 0.98855 1.12027 1.08634 0.91422 1.25729 1.01670 0.96057 1.01010 1.70170 1.21834 1.15966 1.49816 0.85343 0.79318 0.77676 0.78572 1.21731 1.22306 1.19148 1.20370 0.96984 0.92527 0.83723 1.22392 0.96829 1.00756 0.98378 1.20691 0.92609 0.82167 0.98319 0.90986 1.46077 1.66497 1.13625 1.09254 1.20982 0.76082 0.89070 0.83067 1.90630 1.52545 1.71383 1.32202 1.22829 0.99597 0.91694 1.01649 1.22811 0.97706 0.98851 0.95048 1.21491 0.95185 0.94554 0.96146 1.22896 0.91900 0.98421 1.00777 1.21990 0.98714 0.94858 1.01284 1.22715 0.87469 1.02688 0.88805 1.87860 1.62094 1.30183 1.52208 1.22686 0.96408 0.84400 0.98074 1.22129 0.95231 1.02064 0.97916 0.92308 0.91418 0.92072 0.92397 0.95774 0.94290 0.93680 0.97919 0.92383 0.93714 0.75795 0.86148 0.90236 0.90997 0.89009 0.89764 0.90941 0.89788 0.92223 0.87839 0.92411 0.87962 0.90434 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.05 71.98 0.65 -2.32 16 2 C -0.11 -3.24 2.67 -10.72 -0.03 -3.27 16 3 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.15 5.57 5.50 86.36 0.48 6.05 16 5 N -0.61 -28.97 2.99 -699.11 -2.09 -31.06 16 6 C -0.26 -13.86 9.59 84.03 0.81 -13.05 16 7 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 8 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 9 N -0.93 -54.35 11.19 21.65 0.24 -54.10 16 10 Si 0.96 44.47 29.59 68.60 2.03 46.50 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 13 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 14 C 0.19 9.08 5.05 86.36 0.44 9.52 16 15 C -0.14 -5.77 5.77 30.67 0.18 -5.59 16 16 C 0.17 5.53 2.21 45.02 0.10 5.63 16 17 H 0.07 2.43 7.58 -2.39 -0.02 2.41 16 18 N -0.70 -20.90 3.60 -442.40 -1.59 -22.50 16 19 C 0.52 15.64 7.32 87.65 0.64 16.28 16 20 O -0.59 -21.99 15.56 -3.04 -0.05 -22.04 16 21 C -0.14 -3.01 3.80 -10.96 -0.04 -3.05 16 22 C -0.11 -2.26 6.57 30.99 0.20 -2.05 16 23 C -0.07 -1.20 0.78 -51.99 -0.04 -1.24 16 24 C -0.10 -1.70 6.59 31.00 0.20 -1.50 16 25 C -0.13 -1.92 5.22 30.63 0.16 -1.76 16 26 C 0.06 0.83 6.78 72.08 0.49 1.32 16 27 O -0.40 -7.19 10.72 -148.98 -1.60 -8.78 16 28 C 0.06 0.85 6.78 72.07 0.49 1.34 16 29 C -0.14 -2.05 5.35 30.72 0.16 -1.89 16 30 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.27 7.54 -2.39 -0.02 1.25 16 33 H 0.06 2.12 7.93 -2.38 -0.02 2.10 16 34 H 0.02 0.86 6.64 -2.39 -0.02 0.84 16 35 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 36 H 0.04 2.51 6.04 -2.39 -0.01 2.50 16 37 H 0.00 0.14 7.74 -2.39 -0.02 0.12 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 40 H 0.41 11.23 6.73 -92.71 -0.62 10.60 16 41 H 0.12 2.47 7.65 -2.39 -0.02 2.45 16 42 H 0.08 1.98 7.39 -2.39 -0.02 1.96 16 43 H 0.07 1.50 8.09 -2.39 -0.02 1.48 16 44 H 0.09 1.24 7.63 -2.39 -0.02 1.22 16 45 H 0.08 1.48 7.98 -2.39 -0.02 1.46 16 46 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.08 1.14 7.35 -2.39 -0.02 1.12 16 48 H 0.06 0.74 7.67 -2.38 -0.02 0.72 16 49 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 50 H 0.06 0.73 8.13 -2.39 -0.02 0.71 16 51 H 0.10 1.18 8.14 -2.38 -0.02 1.16 16 52 H 0.08 1.14 8.04 -2.39 -0.02 1.12 16 53 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -66.58 398.51 2.50 -64.08 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.26 Total: 25.76 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 5.30 Total: 2.15 kcal Atomic # 7 Polarization: -104.22 SS G_CDS: -3.44 Total: -107.66 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -1.64 Total: -30.82 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -66.58 2.50 -64.08 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944151987.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.713 kcal (2) G-P(sol) polarization free energy of solvation -66.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds