Wall clock time and date at job start Tue Mar 31 2020 21:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08997 * 109.52750 * 2 1 4 4 C 1.53192 * 109.50358 * 120.08739 * 2 1 3 5 5 N 1.46920 * 108.77966 * 174.58332 * 4 2 1 6 6 C 1.36945 * 120.62809 * 126.41322 * 5 4 2 7 7 H 1.07995 * 119.99640 * 207.67336 * 6 5 4 8 8 C 1.38810 * 119.99807 * 27.67484 * 6 5 4 9 9 N 1.31611 * 120.00248 * 17.36007 * 8 6 5 10 10 Si 1.86799 * 119.99647 * 197.35728 * 8 6 5 11 11 H 1.48501 * 109.47498 * 90.00025 * 10 8 6 12 12 H 1.48502 * 109.47025 * 210.00200 * 10 8 6 13 13 H 1.48510 * 109.47270 * 330.00045 * 10 8 6 14 14 C 1.46926 * 118.74132 * 306.39023 * 5 4 2 15 15 C 1.53193 * 108.77448 * 53.60821 * 14 5 4 16 16 C 1.53042 * 109.31158 * 305.36563 * 15 14 5 17 17 H 1.08997 * 109.44938 * 301.35093 * 16 15 14 18 18 N 1.46499 * 109.46057 * 181.38141 * 16 15 14 19 19 C 1.34780 * 119.99484 * 84.93440 * 18 16 15 20 20 O 1.21276 * 120.00368 * 359.97438 * 19 18 16 21 21 C 1.50704 * 120.00059 * 180.02562 * 19 18 16 22 22 C 1.53858 * 113.60440 * 179.97438 * 21 19 18 23 23 C 1.53320 * 87.03967 * 220.29354 * 22 21 19 24 24 C 1.53598 * 87.45381 * 25.17067 * 23 22 21 25 25 C 1.52836 * 113.62029 * 270.42811 * 23 22 21 26 26 C 1.53266 * 108.87745 * 282.21591 * 25 23 22 27 27 O 1.42901 * 109.32511 * 304.68332 * 26 25 23 28 28 C 1.42896 * 114.34966 * 62.99842 * 27 26 25 29 29 C 1.52823 * 113.61889 * 140.01214 * 23 22 21 30 30 H 1.09004 * 109.47165 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47142 * 300.07095 * 1 2 3 32 32 H 1.09002 * 109.47525 * 60.07626 * 1 2 3 33 33 H 1.09004 * 109.58512 * 294.37526 * 4 2 1 34 34 H 1.09005 * 109.58534 * 54.64756 * 4 2 1 35 35 H 0.97002 * 120.00022 * 179.97438 * 9 8 6 36 36 H 1.09003 * 109.58714 * 173.39322 * 14 5 4 37 37 H 1.09000 * 109.58426 * 293.68195 * 14 5 4 38 38 H 1.09000 * 109.49871 * 185.41515 * 15 14 5 39 39 H 1.09005 * 109.49775 * 65.31212 * 15 14 5 40 40 H 0.96998 * 120.00445 * 264.93167 * 18 16 15 41 41 H 1.09000 * 112.89056 * 311.20466 * 21 19 18 42 42 H 1.09002 * 113.63805 * 334.85255 * 22 21 19 43 43 H 1.09005 * 113.63837 * 105.73238 * 22 21 19 44 44 H 1.08989 * 113.63961 * 220.31002 * 24 23 22 45 45 H 1.09003 * 113.70782 * 89.34674 * 24 23 22 46 46 H 1.09003 * 109.56686 * 42.02789 * 25 23 22 47 47 H 1.08992 * 109.56896 * 162.39083 * 25 23 22 48 48 H 1.09000 * 109.49483 * 184.73533 * 26 25 23 49 49 H 1.08998 * 109.52425 * 64.65601 * 26 25 23 50 50 H 1.09009 * 109.49137 * 177.04076 * 28 27 26 51 51 H 1.09003 * 109.51735 * 56.97755 * 28 27 26 52 52 H 1.08996 * 109.57243 * 197.60396 * 29 23 22 53 53 H 1.08991 * 109.57575 * 317.85281 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0414 -0.7239 1.2495 5 7 3.5046 -0.8293 1.1694 6 6 4.2936 -0.3795 2.1943 7 1 5.2989 -0.0401 1.9929 8 6 3.8012 -0.3599 3.4920 9 7 2.7377 -1.0700 3.8032 10 14 4.6482 0.6744 4.7967 11 1 4.0519 2.0343 4.8147 12 1 4.4691 0.0377 6.1263 13 1 6.0972 0.7734 4.4864 14 6 4.1053 -1.4268 -0.0310 15 6 3.5708 -0.6950 -1.2662 16 6 2.0407 -0.7231 -1.2485 17 1 1.6968 -1.7573 -1.2354 18 7 1.5264 -0.0528 -2.4453 19 6 1.3982 -0.7380 -3.5988 20 8 1.7092 -1.9093 -3.6461 21 6 0.8697 -0.0484 -4.8302 22 6 0.7849 -0.9665 -6.0619 23 6 1.2931 0.2232 -6.8847 24 6 1.9385 0.7516 -5.5950 25 6 0.1764 1.1177 -7.4221 26 6 -0.4588 0.4397 -8.6410 27 8 0.5567 0.1500 -9.6037 28 6 1.5505 -0.7723 -9.1525 29 6 2.3035 -0.1654 -7.9634 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5149 0.8894 32 1 -0.3634 0.5126 -0.8907 33 1 1.7638 -0.1581 2.1389 34 1 1.6032 -1.7208 1.2992 35 1 2.3939 -1.0566 4.7101 36 1 5.1896 -1.3246 0.0135 37 1 3.8395 -2.4825 -0.0857 38 1 3.9333 -1.1896 -2.1673 39 1 3.9158 0.3390 -1.2542 40 1 1.2780 0.8841 -2.4076 41 1 -0.0444 0.5145 -4.6414 42 1 1.4805 -1.8052 -6.0306 43 1 -0.2319 -1.2688 -6.3125 44 1 1.8483 1.8307 -5.4715 45 1 2.9540 0.3900 -5.4331 46 1 -0.5791 1.2622 -6.6497 47 1 0.5905 2.0823 -7.7152 48 1 -1.1995 1.1061 -9.0831 49 1 -0.9419 -0.4872 -8.3318 50 1 2.2519 -0.9760 -9.9616 51 1 1.0715 -1.7016 -8.8438 52 1 2.8480 0.7206 -8.2899 53 1 3.0042 -0.8968 -7.5610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000944151989.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:22 Heat of formation + Delta-G solvation = -78.748454 kcal Electronic energy + Delta-G solvation = -30389.955727 eV Core-core repulsion = 26454.034731 eV Total energy + Delta-G solvation = -3935.920996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.99507 -40.60514 -39.21026 -37.88964 -36.11606 -33.96683 -33.51080 -32.29242 -31.99182 -31.06832 -27.57468 -27.33928 -26.91518 -25.77231 -24.64674 -23.92880 -22.80668 -22.50415 -21.27359 -20.55030 -19.17418 -18.85361 -18.04800 -17.31954 -16.92542 -16.91380 -16.68843 -16.39727 -15.80977 -15.71879 -15.56610 -15.28017 -15.18068 -14.76890 -14.67753 -14.57010 -14.24680 -14.15879 -13.55917 -13.51742 -13.21271 -13.10684 -12.95091 -12.88471 -12.72942 -12.58524 -12.50241 -12.43998 -12.19510 -12.08889 -12.03374 -11.84648 -11.75346 -11.55553 -11.42470 -11.31900 -11.25027 -10.98599 -10.61923 -10.57331 -10.24917 -9.94977 -8.73434 -7.89259 -5.35168 1.47554 1.48168 1.57591 1.69125 2.26604 2.50297 3.01309 3.25583 3.40557 3.53582 3.57163 3.63317 3.71920 3.76976 3.99327 4.03852 4.13857 4.19868 4.20456 4.30147 4.33223 4.41394 4.52503 4.55333 4.57942 4.68675 4.73075 4.74715 4.79982 4.82227 4.83660 4.85313 4.92484 4.93977 4.98044 5.00133 5.06895 5.11133 5.14961 5.16382 5.21446 5.28611 5.33006 5.39468 5.49036 5.51217 5.61021 5.64444 5.72234 6.32194 6.36856 6.67779 7.12427 7.36072 7.81761 8.34828 9.17529 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029918 B = 0.002193 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.674251 B =12762.977471 C =13009.945850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 H 0.074 0.926 4 C 0.187 3.813 5 N -0.610 5.610 6 C -0.264 4.264 7 H 0.067 0.933 8 C -0.050 4.050 9 N -0.935 5.935 10 Si 0.969 3.031 11 H -0.281 1.281 12 H -0.296 1.296 13 H -0.270 1.270 14 C 0.144 3.856 15 C -0.123 4.123 16 C 0.169 3.831 17 H 0.051 0.949 18 N -0.707 5.707 19 C 0.517 3.483 20 O -0.589 6.589 21 C -0.128 4.128 22 C -0.110 4.110 23 C -0.076 4.076 24 C -0.106 4.106 25 C -0.126 4.126 26 C 0.055 3.945 27 O -0.404 6.404 28 C 0.060 3.940 29 C -0.138 4.138 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.063 0.937 34 H -0.011 1.011 35 H 0.251 0.749 36 H 0.057 0.943 37 H 0.004 0.996 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.413 0.587 41 H 0.140 0.860 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.107 0.893 49 H 0.052 0.948 50 H 0.100 0.900 51 H 0.050 0.950 52 H 0.074 0.926 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.821 7.897 -24.878 27.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.127 4.127 3 H 0.092 0.908 4 C 0.061 3.939 5 N -0.333 5.333 6 C -0.394 4.394 7 H 0.085 0.915 8 C -0.245 4.245 9 N -0.581 5.581 10 Si 0.797 3.203 11 H -0.208 1.208 12 H -0.223 1.223 13 H -0.195 1.195 14 C 0.018 3.982 15 C -0.163 4.163 16 C 0.064 3.936 17 H 0.070 0.930 18 N -0.358 5.358 19 C 0.305 3.695 20 O -0.469 6.469 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.076 4.076 24 C -0.143 4.143 25 C -0.164 4.164 26 C -0.021 4.021 27 O -0.323 6.323 28 C -0.016 4.016 29 C -0.175 4.175 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.007 0.993 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.022 0.978 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.249 0.751 41 H 0.158 0.842 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.116 0.884 45 H 0.091 0.909 46 H 0.111 0.889 47 H 0.098 0.902 48 H 0.125 0.875 49 H 0.071 0.929 50 H 0.118 0.882 51 H 0.068 0.932 52 H 0.093 0.907 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.649 7.126 -24.929 27.033 hybrid contribution 0.503 -0.007 1.666 1.740 sum -7.146 7.120 -23.263 25.356 Atomic orbital electron populations 1.21670 0.93560 1.01377 1.02336 1.21876 0.96525 0.99852 0.94461 0.90762 1.20619 0.82458 0.95584 0.95278 1.44372 1.02321 1.69828 1.16754 1.19520 0.98162 1.35046 0.86677 0.91495 1.25816 0.99491 1.00240 0.98960 1.70191 1.27233 1.41637 1.19002 0.85241 0.78569 0.78423 0.78045 1.20785 1.22299 1.19460 1.20963 0.96827 0.93773 0.86675 1.22165 0.95670 1.01044 0.97465 1.20600 0.92990 0.95928 0.84121 0.93036 1.46067 1.65419 1.14983 1.09295 1.21167 0.76832 0.86488 0.85020 1.90675 1.52206 1.18653 1.85385 1.22855 1.01960 0.99669 0.90404 1.22860 1.02210 0.96480 0.93243 1.21529 0.96374 0.96140 0.93537 1.22903 0.96981 1.00742 0.93698 1.21976 0.97407 0.98609 0.98378 1.22764 0.89948 0.99947 0.89466 1.87866 1.38725 1.64844 1.40863 1.22645 0.90541 0.91317 0.97125 1.22085 0.97836 1.01797 0.95832 0.94062 0.92547 0.90361 0.91894 0.99252 0.94002 0.92479 0.97826 0.92387 0.91461 0.75079 0.84221 0.90982 0.90399 0.88444 0.90937 0.88902 0.90231 0.87512 0.92930 0.88173 0.93177 0.90722 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.03 71.98 0.65 -3.17 16 2 C -0.11 -3.76 2.46 -10.72 -0.03 -3.78 16 3 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 4 C 0.19 8.96 4.59 86.36 0.40 9.36 16 5 N -0.61 -31.06 2.99 -699.09 -2.09 -33.15 16 6 C -0.26 -14.56 9.59 84.03 0.81 -13.75 16 7 H 0.07 3.60 7.89 -2.91 -0.02 3.58 16 8 C -0.05 -2.76 4.91 84.86 0.42 -2.35 16 9 N -0.93 -55.25 11.19 21.65 0.24 -55.00 16 10 Si 0.97 44.51 29.59 68.60 2.03 46.54 16 11 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 12 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 14 C 0.14 6.34 6.52 86.36 0.56 6.90 16 15 C -0.12 -4.44 5.65 30.67 0.17 -4.26 16 16 C 0.17 5.70 1.88 45.02 0.08 5.78 16 17 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 18 N -0.71 -17.55 4.36 -442.39 -1.93 -19.48 16 19 C 0.52 13.43 7.32 87.66 0.64 14.07 16 20 O -0.59 -21.16 15.56 -3.02 -0.05 -21.21 16 21 C -0.13 -2.08 3.80 -10.96 -0.04 -2.12 16 22 C -0.11 -1.87 6.35 30.99 0.20 -1.68 16 23 C -0.08 -0.99 0.78 -51.99 -0.04 -1.03 16 24 C -0.11 -1.47 6.80 31.09 0.21 -1.26 16 25 C -0.13 -1.25 5.24 30.63 0.16 -1.09 16 26 C 0.06 0.63 6.78 72.07 0.49 1.12 16 27 O -0.40 -6.66 10.72 -148.98 -1.60 -8.26 16 28 C 0.06 0.85 6.78 72.07 0.49 1.34 16 29 C -0.14 -1.93 5.34 30.63 0.16 -1.76 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.72 7.36 -2.39 -0.02 1.70 16 33 H 0.06 3.38 6.04 -2.38 -0.01 3.36 16 34 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 35 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 36 H 0.06 2.44 7.93 -2.39 -0.02 2.43 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 40 H 0.41 7.53 8.31 -92.71 -0.77 6.76 16 41 H 0.14 1.48 7.65 -2.39 -0.02 1.46 16 42 H 0.07 1.63 7.31 -2.39 -0.02 1.61 16 43 H 0.08 1.18 7.63 -2.38 -0.02 1.16 16 44 H 0.10 0.98 8.10 -2.39 -0.02 0.96 16 45 H 0.07 1.27 8.05 -2.39 -0.02 1.25 16 46 H 0.09 0.64 7.35 -2.39 -0.02 0.62 16 47 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.05 0.59 7.68 -2.39 -0.02 0.57 16 50 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 51 H 0.05 0.71 8.12 -2.39 -0.02 0.69 16 52 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 53 H 0.07 1.07 8.04 -2.39 -0.02 1.05 16 Total: -1.00 -70.43 402.43 2.04 -68.39 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: 0.11 Total: 19.86 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 5.33 Total: 2.32 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -3.78 Total: -107.64 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -1.64 Total: -29.47 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -70.43 2.04 -68.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944151989.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.357 kcal (2) G-P(sol) polarization free energy of solvation -70.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds