Wall clock time and date at job start Tue Mar 31 2020 21:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.49274 * 2 1 4 4 O 1.42902 * 109.48309 * 239.96851 * 2 1 3 5 5 C 1.42905 * 114.09619 * 178.85819 * 4 2 1 6 6 C 1.53088 * 109.41686 * 61.16426 * 5 4 2 7 7 C 1.53186 * 109.15900 * 302.38775 * 6 5 4 8 8 C 1.53097 * 109.48299 * 120.02619 * 2 1 3 9 9 H 1.09000 * 109.51951 * 297.50052 * 8 2 1 10 10 C 1.50704 * 109.56668 * 57.65453 * 8 2 1 11 11 O 1.21277 * 120.00280 * 26.72078 * 10 8 2 12 12 N 1.34780 * 119.99526 * 206.71291 * 10 8 2 13 13 C 1.49722 * 122.75975 * 4.65396 * 12 10 8 14 14 C 1.53653 * 105.35312 * 111.68327 * 13 12 10 15 15 C 1.50965 * 111.88653 * 99.94849 * 14 13 12 16 16 H 1.08995 * 108.82628 * 57.70930 * 15 14 13 17 17 C 1.55252 * 111.75480 * 179.15922 * 15 14 13 18 18 N 1.47172 * 105.72363 * 150.27518 * 17 15 14 19 19 C 1.36939 * 126.10125 * 149.56341 * 18 17 15 20 20 H 1.08002 * 119.99837 * 336.84796 * 19 18 17 21 21 C 1.38808 * 120.00150 * 156.84355 * 19 18 17 22 22 N 1.31621 * 119.99981 * 158.26385 * 21 19 18 23 23 Si 1.86799 * 120.00069 * 338.26342 * 21 19 18 24 24 H 1.48501 * 109.47014 * 84.66144 * 23 21 19 25 25 H 1.48498 * 109.47259 * 204.66298 * 23 21 19 26 26 H 1.48496 * 109.47077 * 324.66430 * 23 21 19 27 27 C 1.46766 * 107.80124 * 329.54553 * 18 17 15 28 28 C 1.53831 * 107.91965 * 20.28675 * 27 18 17 29 29 H 1.08997 * 111.00994 * 118.48535 * 28 27 18 30 30 C 1.51860 * 109.24206 * 241.15819 * 28 27 18 31 31 C 1.43648 * 122.75692 * 184.93527 * 12 10 8 32 32 H 1.08998 * 109.47073 * 299.97104 * 1 2 3 33 33 H 1.09007 * 109.47026 * 59.97251 * 1 2 3 34 34 H 1.08997 * 109.46763 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.48484 * 301.17410 * 5 4 2 36 36 H 1.09004 * 109.48809 * 181.15095 * 5 4 2 37 37 H 1.08996 * 109.52325 * 182.48249 * 6 5 4 38 38 H 1.08998 * 109.57251 * 62.32371 * 6 5 4 39 39 H 1.08997 * 109.54279 * 297.10869 * 7 6 5 40 40 H 1.09005 * 109.61077 * 176.89246 * 7 6 5 41 41 H 1.09003 * 110.21118 * 230.66737 * 13 12 10 42 42 H 1.08996 * 110.21320 * 352.62278 * 13 12 10 43 43 H 1.09012 * 109.05606 * 339.31387 * 14 13 12 44 44 H 1.09002 * 108.93047 * 220.50234 * 14 13 12 45 45 H 1.09002 * 110.33949 * 31.12486 * 17 15 14 46 46 H 1.08995 * 110.08480 * 269.29652 * 17 15 14 47 47 H 0.97000 * 119.99972 * 179.97438 * 22 21 19 48 48 H 1.09000 * 109.78102 * 260.66957 * 27 18 17 49 49 H 1.09004 * 109.80022 * 139.90698 * 27 18 17 50 50 H 1.08998 * 108.91488 * 79.86790 * 30 28 27 51 51 H 1.08995 * 108.91220 * 321.31496 * 30 28 27 52 52 H 1.09003 * 108.42476 * 359.30469 * 31 12 10 53 53 H 1.08994 * 108.42401 * 116.73540 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0066 -0.6742 -1.1663 5 6 3.4308 -0.7093 -1.2789 6 6 4.0177 -1.4601 -0.0808 7 6 3.5711 -0.7708 1.2123 8 6 2.0406 -0.7222 1.2496 9 1 1.7148 -0.1842 2.1399 10 6 1.4927 -2.1258 1.2806 11 8 1.1951 -2.6836 0.2457 12 7 1.3336 -2.7611 2.4586 13 6 1.5845 -2.0978 3.7772 14 6 0.2031 -1.9706 4.4379 15 6 -0.0328 -3.0543 5.4621 16 1 0.7545 -3.0048 6.2143 17 6 -1.4208 -2.9106 6.1427 18 7 -1.8309 -4.2769 6.5046 19 6 -2.6167 -4.6280 7.5698 20 1 -2.6899 -3.9735 8.4258 21 6 -3.3192 -5.8250 7.5493 22 7 -3.7157 -6.3748 8.6775 23 14 -3.7020 -6.6555 5.9205 24 1 -2.5430 -7.4848 5.5033 25 1 -4.8993 -7.5202 6.0751 26 1 -3.9680 -5.6217 4.8882 27 6 -1.2478 -5.1960 5.5201 28 6 -0.0688 -4.4774 4.8419 29 1 0.8671 -5.0062 5.0223 30 6 -0.3460 -4.3559 3.3538 31 6 0.9152 -4.1321 2.5520 32 1 -0.3633 0.5134 0.8902 33 1 -0.3633 0.5143 -0.8898 34 1 -0.3633 -1.0277 -0.0005 35 1 3.8193 0.3090 -1.2957 36 1 3.7103 -1.2202 -2.2004 37 1 5.1059 -1.4498 -0.1420 38 1 3.6623 -2.4905 -0.0859 39 1 3.9690 0.2435 1.2409 40 1 3.9392 -1.3313 2.0716 41 1 2.2416 -2.7148 4.3902 42 1 2.0246 -1.1123 3.6254 43 1 -0.5667 -2.0361 3.6688 44 1 0.1332 -0.9991 4.9272 45 1 -2.1392 -2.4730 5.4494 46 1 -1.3371 -2.2932 7.0370 47 1 -4.2070 -7.2110 8.6632 48 1 -1.9969 -5.4609 4.7739 49 1 -0.8920 -6.0964 6.0210 50 1 -1.0235 -3.5184 3.1877 51 1 -0.8267 -5.2710 3.0081 52 1 0.7541 -4.5126 1.5433 53 1 1.7191 -4.7072 3.0112 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946562476.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:29 Heat of formation + Delta-G solvation = -73.600904 kcal Electronic energy + Delta-G solvation = -31660.920508 eV Core-core repulsion = 27725.222726 eV Total energy + Delta-G solvation = -3935.697782 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.93521 -40.65969 -39.06712 -37.22002 -35.01606 -34.61094 -33.79445 -33.34145 -32.98306 -29.66967 -29.13140 -28.58809 -26.16052 -25.51307 -24.43012 -23.91422 -23.07046 -22.41098 -21.90817 -19.90718 -19.77620 -18.90230 -18.18618 -17.36690 -17.30296 -16.84118 -16.70435 -16.48085 -16.03781 -15.74351 -15.60014 -15.42874 -15.01675 -14.81922 -14.60008 -14.26207 -14.08748 -13.90783 -13.73125 -13.65082 -13.51628 -13.21020 -13.17443 -13.04249 -12.97148 -12.90890 -12.66257 -12.53735 -12.25288 -12.03214 -11.99251 -11.96464 -11.78206 -11.61745 -11.36154 -11.28381 -11.25743 -11.00394 -10.83711 -10.53288 -10.22064 -9.57510 -9.04307 -8.23737 -5.51247 1.24786 1.32789 1.41744 1.73447 2.05128 2.36023 2.95266 2.99847 3.36162 3.46135 3.62914 3.69023 3.73776 3.82998 3.83543 3.96707 4.02951 4.06229 4.18216 4.21734 4.33747 4.39931 4.42667 4.45348 4.55089 4.59984 4.66033 4.67529 4.70685 4.75906 4.80048 4.81836 4.84925 4.90234 4.93494 4.93927 4.96215 5.04410 5.07396 5.09607 5.15441 5.17345 5.28761 5.32635 5.33596 5.34756 5.59906 5.68671 5.72072 6.07615 6.47281 6.54778 6.75486 7.33475 7.51219 8.12268 8.96636 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025364 B = 0.002834 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.659836 B = 9877.572953 C =10073.767941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.101 3.899 3 H 0.092 0.908 4 O -0.392 6.392 5 C 0.057 3.943 6 C -0.158 4.158 7 C -0.107 4.107 8 C -0.138 4.138 9 H 0.129 0.871 10 C 0.525 3.475 11 O -0.564 6.564 12 N -0.612 5.612 13 C 0.110 3.890 14 C -0.125 4.125 15 C -0.080 4.080 16 H 0.085 0.915 17 C 0.131 3.869 18 N -0.625 5.625 19 C -0.232 4.232 20 H 0.062 0.938 21 C -0.031 4.031 22 N -0.953 5.953 23 Si 0.941 3.059 24 H -0.272 1.272 25 H -0.306 1.306 26 H -0.278 1.278 27 C 0.116 3.884 28 C -0.081 4.081 29 H 0.097 0.903 30 C -0.121 4.121 31 C 0.120 3.880 32 H 0.089 0.911 33 H 0.063 0.937 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.040 0.960 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.095 0.905 42 H 0.119 0.881 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.020 0.980 46 H 0.050 0.950 47 H 0.263 0.737 48 H 0.008 0.992 49 H 0.028 0.972 50 H 0.063 0.937 51 H 0.058 0.942 52 H 0.061 0.939 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.540 17.309 -17.090 31.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.043 3.957 3 H 0.109 0.891 4 O -0.311 6.311 5 C -0.019 4.019 6 C -0.196 4.196 7 C -0.144 4.144 8 C -0.159 4.159 9 H 0.146 0.854 10 C 0.314 3.686 11 O -0.442 6.442 12 N -0.345 5.345 13 C -0.010 4.010 14 C -0.163 4.163 15 C -0.100 4.100 16 H 0.104 0.896 17 C 0.006 3.994 18 N -0.350 5.350 19 C -0.361 4.361 20 H 0.080 0.920 21 C -0.226 4.226 22 N -0.599 5.599 23 Si 0.771 3.229 24 H -0.199 1.199 25 H -0.234 1.234 26 H -0.204 1.204 27 C -0.009 4.009 28 C -0.100 4.100 29 H 0.115 0.885 30 C -0.159 4.159 31 C -0.004 4.004 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.059 0.941 39 H 0.123 0.877 40 H 0.101 0.899 41 H 0.113 0.887 42 H 0.137 0.863 43 H 0.079 0.921 44 H 0.113 0.887 45 H 0.038 0.962 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.025 0.975 49 H 0.047 0.953 50 H 0.082 0.918 51 H 0.076 0.924 52 H 0.079 0.921 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 20.120 16.798 -17.668 31.610 hybrid contribution -1.129 -1.354 -0.097 1.765 sum 18.991 15.444 -17.765 30.246 Atomic orbital electron populations 1.21874 0.93861 1.01955 1.03242 1.22030 0.94840 0.95047 0.83764 0.89075 1.88044 1.21813 1.78437 1.42853 1.22648 0.80637 1.00215 0.98425 1.22181 1.01943 0.99462 0.95972 1.21594 0.91040 1.03533 0.98240 1.22189 0.98760 0.92650 1.02321 0.85355 1.20838 0.76989 0.88705 0.82034 1.90725 1.51316 1.68619 1.33528 1.48226 1.66505 1.12799 1.06982 1.22775 0.96489 0.99987 0.81793 1.21783 0.97780 0.98888 0.97832 1.21987 0.96731 0.93599 0.97683 0.89626 1.21850 0.94426 0.85918 0.97171 1.44770 1.57222 1.03280 1.29737 1.18615 1.19640 1.04524 0.93329 0.91984 1.25660 0.99243 0.98575 0.99117 1.69942 1.43311 1.19831 1.26849 0.85980 0.77103 0.77965 0.81854 1.19855 1.23430 1.20355 1.21741 0.94070 0.94011 0.91117 1.21923 0.97423 0.96714 0.93951 0.88529 1.21465 0.98286 1.01980 0.94216 1.20226 0.96228 0.83714 1.00261 0.89213 0.91799 0.94327 0.91165 0.89617 0.88828 0.94067 0.87653 0.89891 0.88712 0.86279 0.92099 0.88657 0.96199 0.93174 0.92804 0.97486 0.95344 0.91821 0.92380 0.92055 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 9.25 71.98 0.67 -2.16 16 2 C 0.10 1.65 2.85 30.63 0.09 1.74 16 3 H 0.09 0.96 8.14 -2.38 -0.02 0.95 16 4 O -0.39 -8.84 8.99 -129.50 -1.16 -10.00 16 5 C 0.06 0.88 6.84 72.01 0.49 1.37 16 6 C -0.16 -2.20 5.80 30.69 0.18 -2.02 16 7 C -0.11 -1.03 5.52 30.71 0.17 -0.86 16 8 C -0.14 -1.89 1.87 -11.45 -0.02 -1.91 16 9 H 0.13 1.01 6.35 -2.39 -0.02 1.00 16 10 C 0.52 11.56 5.16 87.66 0.45 12.01 16 11 O -0.56 -17.83 12.89 16.46 0.21 -17.62 16 12 N -0.61 -11.97 2.66 -822.73 -2.19 -14.16 16 13 C 0.11 1.42 6.11 85.97 0.53 1.94 16 14 C -0.12 -2.23 4.65 30.15 0.14 -2.09 16 15 C -0.08 -2.08 2.68 -9.90 -0.03 -2.11 16 16 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 17 C 0.13 4.80 6.78 87.02 0.59 5.39 16 18 N -0.62 -29.96 3.12 -693.56 -2.16 -32.12 16 19 C -0.23 -13.49 10.58 84.03 0.89 -12.60 16 20 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 21 C -0.03 -1.86 5.44 84.86 0.46 -1.40 16 22 N -0.95 -60.83 13.97 21.65 0.30 -60.53 16 23 Si 0.94 48.80 24.35 68.60 1.67 50.47 16 24 H -0.27 -13.39 6.75 99.48 0.67 -12.72 16 25 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 26 H -0.28 -14.22 6.80 99.48 0.68 -13.54 16 27 C 0.12 4.92 4.42 86.61 0.38 5.30 16 28 C -0.08 -2.40 3.09 -10.11 -0.03 -2.43 16 29 H 0.10 2.50 7.76 -2.39 -0.02 2.48 16 30 C -0.12 -3.33 4.53 29.60 0.13 -3.20 16 31 C 0.12 2.81 5.69 86.29 0.49 3.31 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.04 0.99 6.34 -2.39 -0.02 0.98 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.04 0.87 6.97 -2.39 -0.02 0.85 16 39 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.09 1.07 7.85 -2.39 -0.02 1.05 16 42 H 0.12 0.74 5.88 -2.39 -0.01 0.73 16 43 H 0.06 1.35 5.58 -2.38 -0.01 1.34 16 44 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.02 0.74 8.00 -2.39 -0.02 0.72 16 46 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 48 H 0.01 0.35 4.34 -2.39 -0.01 0.34 16 49 H 0.03 1.31 7.42 -2.39 -0.02 1.29 16 50 H 0.06 1.89 5.78 -2.39 -0.01 1.88 16 51 H 0.06 1.73 7.63 -2.39 -0.02 1.72 16 52 H 0.06 1.71 7.01 -2.39 -0.02 1.69 16 53 H 0.07 1.51 7.69 -2.39 -0.02 1.49 16 Total: -1.00 -79.36 378.44 3.07 -76.29 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.82 Total: 7.37 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: 5.58 Total: 0.30 kcal Atomic # 7 Polarization: -102.76 SS G_CDS: -4.05 Total: -106.81 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.95 Total: -27.62 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.67 Total: 50.47 kcal Total: -79.36 3.07 -76.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946562476.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.690 kcal (2) G-P(sol) polarization free energy of solvation -79.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds