Wall clock time and date at job start Tue Mar 31 2020 21:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09004 * 109.48851 * 2 1 4 4 O 1.43039 * 109.56673 * 120.06289 * 2 1 3 5 5 C 1.42895 * 114.13259 * 181.10855 * 4 2 1 6 6 C 1.53088 * 109.41802 * 298.83908 * 5 4 2 7 7 C 1.53177 * 109.16054 * 57.61027 * 6 5 4 8 8 C 1.53093 * 109.48150 * 239.97039 * 2 1 3 9 9 H 1.09005 * 109.51981 * 62.43706 * 8 2 1 10 10 C 1.50703 * 109.52111 * 302.31779 * 8 2 1 11 11 O 1.21279 * 119.99879 * 334.92369 * 10 8 2 12 12 N 1.34773 * 119.99686 * 154.92670 * 10 8 2 13 13 C 1.43508 * 122.54403 * 175.18539 * 12 10 8 14 14 C 1.51726 * 114.25422 * 122.95438 * 13 12 10 15 15 C 1.51152 * 111.87691 * 82.60827 * 14 13 12 16 16 H 1.09000 * 110.22885 * 33.64301 * 15 14 13 17 17 C 1.53388 * 110.94074 * 156.71100 * 15 14 13 18 18 N 1.46607 * 108.10265 * 102.72994 * 17 15 14 19 19 C 1.36939 * 125.31662 * 178.61877 * 18 17 15 20 20 H 1.08008 * 119.99887 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00345 * 180.02562 * 19 18 17 22 22 N 1.31624 * 119.99849 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00498 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46971 * 0.02562 * 23 21 19 25 25 H 1.48495 * 109.46998 * 119.99827 * 23 21 19 26 26 H 1.48493 * 109.47490 * 240.00331 * 23 21 19 27 27 C 1.48156 * 109.79541 * 359.49146 * 18 17 15 28 28 C 1.54046 * 106.18234 * 16.87791 * 27 18 17 29 29 H 1.09004 * 110.61236 * 92.89137 * 28 27 18 30 30 C 1.51839 * 109.47254 * 214.93084 * 28 27 18 31 31 C 1.47132 * 122.87866 * 354.97976 * 12 10 8 32 32 H 1.08993 * 109.47258 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46778 * 300.03195 * 1 2 3 34 34 H 1.09002 * 109.46756 * 60.02676 * 1 2 3 35 35 H 1.09001 * 109.47977 * 178.85390 * 5 4 2 36 36 H 1.09006 * 109.48843 * 58.83376 * 5 4 2 37 37 H 1.08996 * 109.52324 * 297.70788 * 6 5 4 38 38 H 1.08997 * 109.57411 * 177.54380 * 6 5 4 39 39 H 1.09002 * 109.54495 * 183.15077 * 7 6 5 40 40 H 1.09001 * 109.61897 * 62.93192 * 7 6 5 41 41 H 1.09009 * 108.52792 * 1.71439 * 13 12 10 42 42 H 1.09008 * 108.52289 * 244.18963 * 13 12 10 43 43 H 1.08994 * 108.99630 * 321.99216 * 14 13 12 44 44 H 1.08991 * 109.00225 * 203.22594 * 14 13 12 45 45 H 1.08998 * 109.74687 * 222.39969 * 17 15 14 46 46 H 1.09001 * 109.74693 * 343.05897 * 17 15 14 47 47 H 0.96988 * 120.00369 * 179.97438 * 22 21 19 48 48 H 1.08995 * 109.65724 * 258.10986 * 27 18 17 49 49 H 1.08997 * 111.00845 * 136.37636 * 27 18 17 50 50 H 1.09002 * 109.01106 * 295.47789 * 30 28 27 51 51 H 1.09004 * 109.01054 * 54.35301 * 30 28 27 52 52 H 1.08999 * 109.60251 * 131.36043 * 31 12 10 53 53 H 1.08996 * 109.75572 * 10.02635 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 8 2.0091 -0.6752 1.1665 5 6 3.4333 -0.7104 1.2776 6 6 4.0190 -1.4607 0.0786 7 6 3.5712 -0.7709 -1.2137 8 6 2.0407 -0.7223 -1.2495 9 1 1.7139 -0.1849 -2.1399 10 6 1.4927 -2.1259 -1.2791 11 8 1.1676 -2.6718 -0.2461 12 7 1.3640 -2.7744 -2.4535 13 6 0.9447 -4.1443 -2.5371 14 6 -0.2892 -4.3674 -3.3913 15 6 0.0514 -4.4520 -4.8615 16 1 1.0277 -4.9178 -4.9960 17 6 -1.0292 -5.2219 -5.6312 18 7 -1.8629 -4.2482 -6.3426 19 6 -2.9170 -4.5564 -7.1606 20 1 -3.1912 -5.5885 -7.3224 21 6 -3.6331 -3.5425 -7.7818 22 7 -3.2986 -2.2847 -7.5850 23 14 -5.0705 -3.9629 -8.8982 24 1 -5.2399 -5.4373 -8.9532 25 1 -6.3096 -3.3424 -8.3646 26 1 -4.8052 -3.4434 -10.2638 27 6 -1.3817 -2.8754 -6.0615 28 6 0.0417 -3.0276 -5.4923 29 1 0.7830 -2.9557 -6.2882 30 6 0.2834 -1.9588 -4.4412 31 6 1.6365 -2.1376 -3.7516 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5143 0.8897 34 1 -0.3633 0.5134 -0.8903 35 1 3.7135 -1.2217 2.1986 36 1 3.8220 0.3079 1.2946 37 1 3.6627 -2.4907 0.0841 38 1 5.1073 -1.4513 0.1382 39 1 3.9384 -1.3323 -2.0728 40 1 3.9691 0.2434 -1.2439 41 1 0.7384 -4.5054 -1.5294 42 1 1.7637 -4.7325 -2.9511 43 1 -0.9832 -3.5416 -3.2348 44 1 -0.7701 -5.2961 -3.0845 45 1 -0.5608 -5.8980 -6.3465 46 1 -1.6427 -5.7920 -4.9335 47 1 -3.7987 -1.5762 -8.0193 48 1 -2.0296 -2.4038 -5.3228 49 1 -1.3565 -2.2761 -6.9716 50 1 0.2545 -0.9790 -4.9180 51 1 -0.5067 -2.0123 -3.6921 52 1 2.2815 -2.7833 -4.3475 53 1 2.1110 -1.1690 -3.5944 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946562477.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:34 Heat of formation + Delta-G solvation = -74.539655 kcal Electronic energy + Delta-G solvation = -31689.707575 eV Core-core repulsion = 27753.969086 eV Total energy + Delta-G solvation = -3935.738489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.00158 -40.57488 -39.00970 -37.16179 -35.03996 -34.54233 -33.78002 -33.32659 -32.41758 -29.43150 -28.99679 -28.50211 -26.24028 -25.51732 -24.33438 -23.96744 -23.07344 -22.03472 -21.84566 -19.78609 -19.68379 -18.91998 -18.20231 -17.35604 -16.93755 -16.90484 -16.60397 -16.41130 -15.98320 -15.76610 -15.51781 -15.15909 -14.91451 -14.59116 -14.45464 -14.38735 -13.88049 -13.73627 -13.62014 -13.56751 -13.27440 -13.14254 -13.05824 -12.98072 -12.82571 -12.72407 -12.62209 -12.45377 -12.30621 -12.06010 -11.99143 -11.85388 -11.70867 -11.62785 -11.33700 -11.30975 -11.10984 -11.00944 -10.71525 -10.52833 -10.22445 -9.55354 -8.85721 -7.80139 -5.19927 1.44638 1.45409 1.55639 1.71171 2.11267 2.49026 2.94536 3.31708 3.46870 3.66387 3.71012 3.77640 3.78013 3.84940 3.96823 4.04765 4.06989 4.12281 4.21021 4.27729 4.35801 4.39742 4.45691 4.52280 4.63106 4.67940 4.71132 4.72994 4.75293 4.77253 4.80755 4.85081 4.94744 4.96324 4.97036 5.07188 5.08083 5.12567 5.16103 5.19449 5.21954 5.28101 5.31984 5.34161 5.46992 5.60562 5.69540 5.78615 5.87746 6.27449 6.46395 6.56941 7.12390 7.32008 7.80998 8.43437 9.24604 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023707 B = 0.002757 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.783662 B =10152.980739 C =10523.556229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.104 3.896 3 H 0.091 0.909 4 O -0.391 6.391 5 C 0.056 3.944 6 C -0.156 4.156 7 C -0.106 4.106 8 C -0.141 4.141 9 H 0.121 0.879 10 C 0.525 3.475 11 O -0.561 6.561 12 N -0.607 5.607 13 C 0.118 3.882 14 C -0.114 4.114 15 C -0.077 4.077 16 H 0.101 0.899 17 C 0.136 3.864 18 N -0.629 5.629 19 C -0.241 4.241 20 H 0.076 0.924 21 C -0.066 4.066 22 N -0.947 5.947 23 Si 0.977 3.023 24 H -0.269 1.269 25 H -0.294 1.294 26 H -0.289 1.289 27 C 0.182 3.818 28 C -0.095 4.095 29 H 0.080 0.920 30 C -0.121 4.121 31 C 0.113 3.887 32 H 0.039 0.961 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.042 0.958 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.046 0.954 44 H 0.067 0.933 45 H 0.024 0.976 46 H 0.016 0.984 47 H 0.246 0.754 48 H -0.020 1.020 49 H 0.051 0.949 50 H 0.075 0.925 51 H 0.050 0.950 52 H 0.096 0.904 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.672 6.398 12.886 24.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.046 3.954 3 H 0.109 0.891 4 O -0.310 6.310 5 C -0.020 4.020 6 C -0.194 4.194 7 C -0.144 4.144 8 C -0.162 4.162 9 H 0.139 0.861 10 C 0.315 3.685 11 O -0.439 6.439 12 N -0.339 5.339 13 C -0.007 4.007 14 C -0.152 4.152 15 C -0.095 4.095 16 H 0.119 0.881 17 C 0.011 3.989 18 N -0.355 5.355 19 C -0.370 4.370 20 H 0.094 0.906 21 C -0.259 4.259 22 N -0.597 5.597 23 Si 0.805 3.195 24 H -0.193 1.193 25 H -0.221 1.221 26 H -0.215 1.215 27 C 0.058 3.942 28 C -0.115 4.115 29 H 0.098 0.902 30 C -0.159 4.159 31 C -0.009 4.009 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.123 0.877 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.041 0.959 46 H 0.034 0.966 47 H 0.055 0.945 48 H -0.002 1.002 49 H 0.069 0.931 50 H 0.093 0.907 51 H 0.069 0.931 52 H 0.115 0.885 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 19.234 6.093 13.512 24.283 hybrid contribution -1.565 -0.412 -0.962 1.883 sum 17.669 5.681 12.550 22.405 Atomic orbital electron populations 1.21874 0.94087 1.02010 1.03057 1.22001 0.94641 0.95018 0.83772 0.89101 1.88059 1.21896 1.78372 1.42706 1.22670 0.80552 1.00264 0.98522 1.22176 1.02060 0.99458 0.95712 1.21599 0.90705 1.03574 0.98506 1.22190 0.99085 0.92779 1.02134 0.86068 1.20807 0.77107 0.88529 0.82099 1.90711 1.50544 1.69156 1.33451 1.47544 1.66452 1.13037 1.06862 1.20449 0.96575 0.83423 1.00210 1.21326 0.97888 1.01723 0.94298 1.21738 0.98458 0.95631 0.93704 0.88105 1.21311 0.91757 0.92220 0.93584 1.44930 1.34059 1.02805 1.53733 1.19484 1.05466 0.92844 1.19219 0.90590 1.25594 1.02420 0.95334 1.02554 1.70156 1.42677 0.98695 1.48181 0.85030 0.78652 0.77669 0.78115 1.19336 1.22119 1.21534 1.21401 0.89991 0.85885 0.96949 1.22281 0.97321 0.94418 0.97443 0.90189 1.21806 0.97856 0.98819 0.97454 1.22098 0.96124 1.00199 0.82476 0.94222 0.91545 0.89840 0.89319 0.91219 0.93900 0.88564 0.89835 0.87741 0.91811 0.90192 0.93576 0.91445 0.95851 0.96640 0.94458 1.00195 0.93117 0.90653 0.93096 0.88550 0.86980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.25 71.99 0.67 -2.79 16 2 C 0.10 2.03 2.85 30.63 0.09 2.12 16 3 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 4 O -0.39 -9.62 9.00 -129.50 -1.17 -10.78 16 5 C 0.06 0.95 6.84 72.01 0.49 1.44 16 6 C -0.16 -2.39 5.82 30.68 0.18 -2.21 16 7 C -0.11 -1.29 5.44 30.71 0.17 -1.13 16 8 C -0.14 -2.45 1.80 -11.45 -0.02 -2.47 16 9 H 0.12 1.61 6.48 -2.38 -0.02 1.59 16 10 C 0.52 13.28 5.15 87.66 0.45 13.73 16 11 O -0.56 -19.04 12.87 16.45 0.21 -18.83 16 12 N -0.61 -14.06 2.60 -830.14 -2.16 -16.22 16 13 C 0.12 2.98 5.71 86.51 0.49 3.48 16 14 C -0.11 -3.43 4.77 29.57 0.14 -3.29 16 15 C -0.08 -2.40 2.77 -10.30 -0.03 -2.43 16 16 H 0.10 2.54 7.67 -2.39 -0.02 2.52 16 17 C 0.14 5.63 6.82 86.49 0.59 6.22 16 18 N -0.63 -32.76 3.41 -694.70 -2.37 -35.13 16 19 C -0.24 -13.79 10.25 84.03 0.86 -12.93 16 20 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 21 C -0.07 -3.82 5.48 84.86 0.47 -3.35 16 22 N -0.95 -56.80 10.15 21.65 0.22 -56.58 16 23 Si 0.98 46.34 29.55 68.60 2.03 48.37 16 24 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 27 C 0.18 8.83 5.14 86.41 0.44 9.27 16 28 C -0.10 -3.19 2.88 -9.86 -0.03 -3.21 16 29 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 30 C -0.12 -3.22 4.51 30.19 0.14 -3.09 16 31 C 0.11 2.08 5.83 86.23 0.50 2.58 16 32 H 0.04 1.18 6.28 -2.39 -0.02 1.16 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.04 0.95 7.03 -2.39 -0.02 0.93 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.88 8.08 -2.39 -0.02 0.86 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.06 1.86 7.00 -2.38 -0.02 1.84 16 42 H 0.08 1.68 7.67 -2.38 -0.02 1.66 16 43 H 0.05 1.66 5.88 -2.39 -0.01 1.65 16 44 H 0.07 2.04 7.53 -2.39 -0.02 2.03 16 45 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.02 0.66 7.40 -2.39 -0.02 0.64 16 47 H 0.25 14.28 8.31 -92.72 -0.77 13.51 16 48 H -0.02 -1.09 7.72 -2.39 -0.02 -1.11 16 49 H 0.05 2.80 6.31 -2.39 -0.02 2.79 16 50 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.05 1.64 5.57 -2.38 -0.01 1.63 16 52 H 0.10 1.51 7.76 -2.39 -0.02 1.49 16 53 H 0.11 1.38 5.76 -2.39 -0.01 1.36 16 Total: -1.00 -75.85 381.94 3.25 -72.61 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.88 Total: 14.63 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 5.60 Total: 1.94 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -4.31 Total: -107.93 kcal Atomic # 8 Polarization: -28.66 SS G_CDS: -0.95 Total: -29.61 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -75.85 3.25 -72.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946562477.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.933 kcal (2) G-P(sol) polarization free energy of solvation -75.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds