Wall clock time and date at job start Tue Mar 31 2020 21:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.48527 * 2 1 4 4 O 1.42910 * 109.47945 * 120.03534 * 2 1 3 5 5 C 1.42909 * 114.09384 * 181.14352 * 4 2 1 6 6 C 1.53098 * 109.41142 * 298.83557 * 5 4 2 7 7 C 1.53175 * 109.16124 * 57.61430 * 6 5 4 8 8 C 1.53093 * 109.47892 * 239.97386 * 2 1 3 9 9 H 1.08993 * 109.52376 * 302.31421 * 8 2 1 10 10 C 1.50701 * 109.52163 * 62.50708 * 8 2 1 11 11 O 1.21274 * 120.00266 * 24.35186 * 10 8 2 12 12 N 1.34781 * 119.99748 * 204.35744 * 10 8 2 13 13 C 1.49716 * 122.75576 * 184.31654 * 12 10 8 14 14 C 1.53168 * 105.60349 * 111.56870 * 13 12 10 15 15 C 1.50954 * 111.95713 * 99.83315 * 14 13 12 16 16 H 1.08992 * 109.52338 * 58.24596 * 15 14 13 17 17 C 1.53590 * 111.30573 * 178.51020 * 15 14 13 18 18 N 1.47174 * 105.65119 * 150.28809 * 17 15 14 19 19 C 1.36939 * 126.09949 * 149.75894 * 18 17 15 20 20 H 1.08002 * 120.00110 * 334.26777 * 19 18 17 21 21 C 1.38807 * 120.00112 * 154.26636 * 19 18 17 22 22 N 1.31621 * 120.00328 * 161.03840 * 21 19 18 23 23 Si 1.86801 * 120.00151 * 341.03435 * 21 19 18 24 24 H 1.48501 * 109.47003 * 84.67749 * 23 21 19 25 25 H 1.48499 * 109.47364 * 204.68338 * 23 21 19 26 26 H 1.48509 * 109.47033 * 324.68024 * 23 21 19 27 27 C 1.46775 * 107.80552 * 329.74102 * 18 17 15 28 28 C 1.53846 * 107.90673 * 20.29270 * 27 18 17 29 29 H 1.08996 * 111.00530 * 117.82425 * 28 27 18 30 30 C 1.51856 * 109.23141 * 241.13432 * 28 27 18 31 31 C 1.43637 * 122.75541 * 4.01722 * 12 10 8 32 32 H 1.09003 * 109.47242 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47241 * 60.02284 * 1 2 3 34 34 H 1.09002 * 109.46865 * 300.02331 * 1 2 3 35 35 H 1.09003 * 109.47389 * 178.85729 * 5 4 2 36 36 H 1.08992 * 109.49194 * 58.82305 * 5 4 2 37 37 H 1.09001 * 109.52350 * 297.70648 * 6 5 4 38 38 H 1.08994 * 109.56929 * 177.55163 * 6 5 4 39 39 H 1.09002 * 109.54099 * 183.15344 * 7 6 5 40 40 H 1.08997 * 109.54597 * 62.88783 * 7 6 5 41 41 H 1.09002 * 110.21679 * 230.59196 * 13 12 10 42 42 H 1.09007 * 110.21379 * 352.54771 * 13 12 10 43 43 H 1.09003 * 108.98543 * 220.47491 * 14 13 12 44 44 H 1.09000 * 108.97916 * 339.19439 * 14 13 12 45 45 H 1.08998 * 110.21010 * 269.33532 * 17 15 14 46 46 H 1.08996 * 110.21046 * 31.24489 * 17 15 14 47 47 H 0.96999 * 120.00221 * 179.97438 * 22 21 19 48 48 H 1.08998 * 109.77997 * 260.68170 * 27 18 17 49 49 H 1.08998 * 109.78160 * 139.90006 * 27 18 17 50 50 H 1.09005 * 108.91552 * 320.65482 * 30 28 27 51 51 H 1.08998 * 108.91977 * 79.29172 * 30 28 27 52 52 H 1.09000 * 108.42890 * 359.37602 * 31 12 10 53 53 H 1.09001 * 108.42721 * 116.63822 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 8 2.0065 -0.6744 1.1664 5 6 3.4308 -0.7094 1.2790 6 6 4.0176 -1.4602 0.0807 7 6 3.5711 -0.7708 -1.2122 8 6 2.0405 -0.7222 -1.2496 9 1 1.6442 -1.7373 -1.2710 10 6 1.5902 0.0217 -2.4804 11 8 1.3314 1.2046 -2.4133 12 7 1.4752 -0.6277 -3.6559 13 6 1.1249 0.0677 -4.9346 14 6 2.3873 0.0002 -5.7995 15 6 2.3098 -1.1039 -6.8260 16 1 1.4388 -0.9488 -7.4626 17 6 3.5665 -1.1346 -7.7085 18 7 3.7373 -2.5409 -8.1073 19 6 4.2975 -2.9862 -9.2748 20 1 4.2836 -2.3591 -10.1540 21 6 4.8834 -4.2434 -9.3283 22 7 5.0828 -4.8277 -10.4908 23 14 5.3889 -5.1063 -7.7506 24 1 4.2196 -5.8244 -7.1826 25 1 6.4725 -6.0785 -8.0433 26 1 5.8763 -4.1018 -6.7713 27 6 3.2005 -3.3813 -7.0302 28 6 2.2422 -2.5191 -6.1905 29 1 1.2274 -2.9153 -6.2259 30 6 2.7589 -2.4408 -4.7647 31 6 1.6846 -2.0428 -3.7857 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5134 -0.8901 34 1 -0.3633 0.5142 0.8898 35 1 3.7099 -1.2205 2.2004 36 1 3.8194 0.3087 1.2959 37 1 3.6613 -2.4903 0.0862 38 1 5.1058 -1.4509 0.1414 39 1 3.9391 -1.3326 -2.0708 40 1 3.9689 0.2435 -1.2408 41 1 0.3012 -0.4466 -5.4297 42 1 0.8583 1.1062 -4.7378 43 1 2.5170 0.9531 -6.3126 44 1 3.2493 -0.1742 -5.1555 45 1 3.4238 -0.5081 -8.5889 46 1 4.4334 -0.7961 -7.1411 47 1 5.4925 -5.7061 -10.5282 48 1 4.0157 -3.7434 -6.4038 49 1 2.6592 -4.2259 -7.4563 50 1 3.1551 -3.4151 -4.4785 51 1 3.5628 -1.7060 -4.7200 52 1 1.9477 -2.4434 -2.8068 53 1 0.7478 -2.5022 -4.1011 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946562478.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:19:38 Heat of formation + Delta-G solvation = -78.150524 kcal Electronic energy + Delta-G solvation = -31494.669689 eV Core-core repulsion = 27558.774621 eV Total energy + Delta-G solvation = -3935.895068 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.96798 -40.68604 -39.42378 -37.44180 -35.15151 -34.64489 -33.80985 -33.40534 -33.01471 -29.71993 -29.24173 -28.67289 -26.31100 -25.43762 -24.42919 -23.99722 -23.08850 -22.38031 -21.68526 -20.16913 -19.85926 -18.97693 -18.53446 -17.50674 -17.24058 -17.04589 -16.70750 -16.28907 -16.17787 -15.73320 -15.60774 -15.48800 -15.17589 -14.94461 -14.66676 -14.20712 -14.16299 -14.03715 -13.88823 -13.68539 -13.56866 -13.26654 -13.23568 -13.11896 -13.02020 -12.87256 -12.60353 -12.43660 -12.25586 -12.10952 -12.03614 -11.96279 -11.92029 -11.79630 -11.35467 -11.32891 -11.23925 -11.00460 -10.83241 -10.72855 -10.42173 -9.68247 -8.99446 -8.21459 -5.53908 1.28234 1.36687 1.46839 1.52091 1.90390 2.39107 2.78607 3.03341 3.35220 3.45429 3.57410 3.63083 3.69878 3.73878 3.81202 3.91918 3.96972 4.05768 4.09285 4.17905 4.26475 4.32558 4.37908 4.44645 4.54764 4.56070 4.60129 4.62844 4.69970 4.72634 4.75738 4.82403 4.84051 4.88416 4.91936 4.92345 4.94361 5.02135 5.05565 5.06483 5.07632 5.12651 5.22425 5.27072 5.28837 5.36212 5.48920 5.63356 5.74180 6.09244 6.21872 6.48213 6.77096 7.09358 7.51567 8.12764 8.99250 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.003116 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.590803 B = 8982.885187 C = 9960.894645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.107 3.893 3 H 0.053 0.947 4 O -0.389 6.389 5 C 0.051 3.949 6 C -0.148 4.148 7 C -0.113 4.113 8 C -0.133 4.133 9 H 0.117 0.883 10 C 0.533 3.467 11 O -0.575 6.575 12 N -0.604 5.604 13 C 0.117 3.883 14 C -0.117 4.117 15 C -0.083 4.083 16 H 0.076 0.924 17 C 0.132 3.868 18 N -0.625 5.625 19 C -0.238 4.238 20 H 0.052 0.948 21 C -0.035 4.035 22 N -0.959 5.959 23 Si 0.954 3.046 24 H -0.265 1.265 25 H -0.308 1.308 26 H -0.269 1.269 27 C 0.114 3.886 28 C -0.081 4.081 29 H 0.100 0.900 30 C -0.127 4.127 31 C 0.106 3.894 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.113 0.887 36 H 0.051 0.949 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.060 0.940 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.067 0.933 45 H 0.041 0.959 46 H 0.021 0.979 47 H 0.263 0.737 48 H 0.018 0.982 49 H 0.030 0.970 50 H 0.081 0.919 51 H 0.066 0.934 52 H 0.097 0.903 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.454 7.408 25.600 27.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.049 3.951 3 H 0.072 0.928 4 O -0.308 6.308 5 C -0.025 4.025 6 C -0.186 4.186 7 C -0.150 4.150 8 C -0.155 4.155 9 H 0.135 0.865 10 C 0.322 3.678 11 O -0.455 6.455 12 N -0.336 5.336 13 C -0.004 4.004 14 C -0.155 4.155 15 C -0.102 4.102 16 H 0.094 0.906 17 C 0.007 3.993 18 N -0.351 5.351 19 C -0.367 4.367 20 H 0.070 0.930 21 C -0.230 4.230 22 N -0.605 5.605 23 Si 0.782 3.218 24 H -0.191 1.191 25 H -0.237 1.237 26 H -0.194 1.194 27 C -0.011 4.011 28 C -0.100 4.100 29 H 0.118 0.882 30 C -0.166 4.166 31 C -0.017 4.017 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.131 0.869 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.059 0.941 46 H 0.039 0.961 47 H 0.072 0.928 48 H 0.036 0.964 49 H 0.048 0.952 50 H 0.099 0.901 51 H 0.084 0.916 52 H 0.115 0.885 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.621 7.803 25.632 28.146 hybrid contribution 1.047 -0.508 -0.669 1.343 sum -7.574 7.294 24.963 27.087 Atomic orbital electron populations 1.21774 0.92392 1.03135 1.02784 1.21766 0.95638 0.94361 0.83369 0.92849 1.87937 1.22457 1.78027 1.42400 1.22806 0.79967 1.00222 0.99479 1.22172 1.02369 1.00527 0.93509 1.21571 0.91720 1.01796 0.99959 1.22024 0.98791 1.01925 0.92717 0.86528 1.20555 0.76087 0.86842 0.84310 1.90671 1.51937 1.17167 1.85706 1.48141 1.67834 1.09676 1.07954 1.22298 0.96987 0.98795 0.82310 1.21590 0.98669 0.98203 0.97040 1.21682 0.97905 0.94376 0.96248 0.90565 1.21540 0.95935 0.85489 0.96367 1.44741 1.69573 1.02629 1.18145 1.18567 1.30175 1.00910 0.87058 0.92983 1.25851 0.99253 0.98395 0.99485 1.69941 1.48312 1.16212 1.26034 0.85798 0.77910 0.77587 0.80490 1.19093 1.23654 1.19412 1.21823 0.94832 0.94631 0.89817 1.21958 0.99177 0.94608 0.94246 0.88167 1.21464 0.99084 1.02668 0.93354 1.20640 0.99787 0.80330 1.00968 0.91092 0.91576 0.91314 0.86871 0.93065 0.90038 0.88880 0.90249 0.92167 0.88625 0.89689 0.90724 0.91415 0.94059 0.96137 0.92758 0.96439 0.95159 0.90076 0.91589 0.88499 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 9.31 71.98 0.67 -1.81 16 2 C 0.11 1.98 2.42 30.62 0.07 2.06 16 3 H 0.05 1.17 7.79 -2.39 -0.02 1.15 16 4 O -0.39 -7.01 10.41 -148.98 -1.55 -8.57 16 5 C 0.05 0.66 6.84 72.01 0.49 1.16 16 6 C -0.15 -1.71 6.14 30.69 0.19 -1.52 16 7 C -0.11 -1.70 5.26 30.71 0.16 -1.54 16 8 C -0.13 -2.23 1.43 -11.45 -0.02 -2.24 16 9 H 0.12 1.59 6.35 -2.39 -0.02 1.58 16 10 C 0.53 11.31 6.11 87.66 0.54 11.85 16 11 O -0.57 -16.13 14.81 -3.01 -0.04 -16.17 16 12 N -0.60 -11.31 2.67 -824.46 -2.21 -13.51 16 13 C 0.12 2.25 6.27 85.81 0.54 2.79 16 14 C -0.12 -2.57 4.57 29.98 0.14 -2.44 16 15 C -0.08 -2.25 2.61 -10.48 -0.03 -2.28 16 16 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 17 C 0.13 4.95 6.71 86.45 0.58 5.53 16 18 N -0.63 -29.54 3.09 -696.81 -2.15 -31.69 16 19 C -0.24 -13.81 10.59 84.03 0.89 -12.92 16 20 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 21 C -0.04 -2.08 5.46 84.86 0.46 -1.61 16 22 N -0.96 -60.77 13.97 21.65 0.30 -60.47 16 23 Si 0.95 46.56 24.35 68.60 1.67 48.23 16 24 H -0.27 -11.98 6.83 99.48 0.68 -11.30 16 25 H -0.31 -15.20 7.11 99.48 0.71 -14.50 16 26 H -0.27 -12.62 6.71 99.48 0.67 -11.95 16 27 C 0.11 4.50 4.45 86.61 0.39 4.89 16 28 C -0.08 -2.18 3.12 -10.10 -0.03 -2.21 16 29 H 0.10 2.31 7.80 -2.39 -0.02 2.30 16 30 C -0.13 -2.69 4.51 29.47 0.13 -2.55 16 31 C 0.11 1.66 5.57 86.16 0.48 2.14 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.07 1.30 6.65 -2.39 -0.02 1.28 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.08 1.17 8.13 -2.39 -0.02 1.15 16 40 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.10 1.57 7.85 -2.39 -0.02 1.55 16 42 H 0.08 1.77 7.30 -2.38 -0.02 1.76 16 43 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.07 1.62 5.58 -2.39 -0.01 1.61 16 45 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.02 0.78 7.96 -2.39 -0.02 0.76 16 47 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 48 H 0.02 0.73 4.20 -2.39 -0.01 0.72 16 49 H 0.03 1.30 7.51 -2.39 -0.02 1.28 16 50 H 0.08 1.65 7.66 -2.38 -0.02 1.63 16 51 H 0.07 1.56 5.78 -2.39 -0.01 1.54 16 52 H 0.10 1.16 5.45 -2.39 -0.01 1.15 16 53 H 0.08 1.10 7.72 -2.39 -0.02 1.08 16 Total: -1.00 -72.65 382.83 2.49 -70.16 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.82 Total: 12.75 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 5.65 Total: -0.73 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -4.06 Total: -105.68 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -1.59 Total: -24.74 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.67 Total: 48.23 kcal Total: -72.65 2.49 -70.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946562478.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.991 kcal (2) G-P(sol) polarization free energy of solvation -72.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds