Wall clock time and date at job start Tue Mar 31 2020 20:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 110.42523 * 2 1 4 4 O 1.44642 * 110.50749 * 122.36474 * 2 1 3 5 5 C 1.44423 * 105.37322 * 159.18400 * 4 2 1 6 6 C 1.54482 * 104.80130 * 319.56543 * 5 4 2 7 7 C 1.54485 * 110.36975 * 237.68742 * 2 1 3 8 8 C 1.52996 * 110.51428 * 335.97508 * 7 2 1 9 9 C 1.50704 * 110.50798 * 98.55053 * 7 2 1 10 10 O 1.21288 * 119.99878 * 355.53592 * 9 7 2 11 11 N 1.34773 * 119.99955 * 175.53945 * 9 7 2 12 12 C 1.43506 * 122.55071 * 355.67460 * 11 9 7 13 13 C 1.51730 * 114.25552 * 122.96291 * 12 11 9 14 14 C 1.51154 * 111.88792 * 82.65543 * 13 12 11 15 15 H 1.08996 * 110.22976 * 33.67677 * 14 13 12 16 16 C 1.53396 * 110.93258 * 156.75138 * 14 13 12 17 17 N 1.46602 * 108.11028 * 102.75155 * 16 14 13 18 18 C 1.36940 * 125.31911 * 178.59861 * 17 16 14 19 19 H 1.08000 * 119.99953 * 0.02562 * 18 17 16 20 20 C 1.38811 * 120.00112 * 179.97438 * 18 17 16 21 21 N 1.31625 * 120.00063 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00182 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47051 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47304 * 119.99673 * 22 20 18 25 25 H 1.48495 * 109.47069 * 240.00156 * 22 20 18 26 26 C 1.46664 * 109.36520 * 358.64075 * 17 16 14 27 27 C 1.54052 * 106.93579 * 18.27808 * 26 17 16 28 28 H 1.09001 * 111.47671 * 91.56827 * 27 26 17 29 29 C 1.51846 * 109.44247 * 214.15057 * 27 26 17 30 30 C 1.49548 * 122.54900 * 175.69615 * 11 9 7 31 31 H 1.08997 * 109.47596 * 182.30939 * 1 2 3 32 32 H 1.09004 * 109.46937 * 302.31128 * 1 2 3 33 33 H 1.08997 * 109.47278 * 62.30908 * 1 2 3 34 34 H 1.08995 * 110.37596 * 200.72912 * 5 4 2 35 35 H 1.09003 * 110.46609 * 78.44070 * 5 4 2 36 36 H 1.09000 * 110.51072 * 265.33437 * 6 5 4 37 37 H 1.09001 * 110.63095 * 142.67875 * 6 5 4 38 38 H 1.09001 * 109.47397 * 189.08029 * 8 7 2 39 39 H 1.09001 * 109.47194 * 309.08796 * 8 7 2 40 40 H 1.09005 * 109.47156 * 69.08384 * 8 7 2 41 41 H 1.08999 * 108.52526 * 244.19726 * 12 11 9 42 42 H 1.08999 * 108.52505 * 1.88303 * 12 11 9 43 43 H 1.09000 * 108.99487 * 203.26866 * 13 12 11 44 44 H 1.08994 * 109.00082 * 322.10602 * 13 12 11 45 45 H 1.09004 * 109.74032 * 222.41851 * 16 14 13 46 46 H 1.08992 * 109.74652 * 343.07586 * 16 14 13 47 47 H 0.97000 * 120.00206 * 179.97438 * 21 20 18 48 48 H 1.08995 * 109.97149 * 258.90156 * 26 17 16 49 49 H 1.09000 * 109.96479 * 137.64620 * 26 17 16 50 50 H 1.09007 * 109.00386 * 295.53236 * 29 27 26 51 51 H 1.09001 * 109.00610 * 54.39184 * 29 27 26 52 52 H 1.08998 * 110.26314 * 131.21122 * 30 11 9 53 53 H 1.09006 * 110.39259 * 9.17967 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0214 0.0000 4 8 2.0367 -0.7252 1.1443 5 6 3.3900 -1.0911 0.7971 6 6 3.3173 -1.5084 -0.6885 7 6 2.0677 -0.7741 -1.2240 8 6 1.0274 -1.7794 -1.7219 9 6 2.4483 0.1800 -2.3267 10 8 2.2353 1.3675 -2.2014 11 7 3.0251 -0.2862 -3.4520 12 6 3.3843 -1.6652 -3.6213 13 6 2.7537 -2.3296 -4.8308 14 6 3.5266 -2.0435 -6.0979 15 1 4.5920 -1.9679 -5.8805 16 6 3.2624 -3.1219 -7.1563 17 7 2.3251 -2.5738 -8.1412 18 6 1.8710 -3.2312 -9.2534 19 1 2.2049 -4.2374 -9.4598 20 6 0.9809 -2.6049 -10.1149 21 7 0.5728 -1.3792 -9.8626 22 14 0.3610 -3.5019 -11.6316 23 1 0.9657 -4.8571 -11.6868 24 1 -1.1177 -3.6215 -11.5662 25 1 0.7428 -2.7402 -12.8478 26 6 1.9503 -1.2109 -7.7500 27 6 3.0130 -0.7238 -6.7468 28 1 3.8271 -0.2018 -7.2498 29 6 2.3587 0.1786 -5.7156 30 6 3.3400 0.5944 -4.6190 31 1 -0.3634 -1.0268 0.0414 32 1 -0.3633 0.5493 0.8686 33 1 -0.3634 0.4775 -0.9099 34 1 3.7263 -1.9272 1.4102 35 1 4.0586 -0.2389 0.9195 36 1 3.1927 -2.5877 -0.7763 37 1 4.2098 -1.1832 -1.2229 38 1 1.4775 -2.4245 -2.4765 39 1 0.6791 -2.3860 -0.8860 40 1 0.1842 -1.2437 -2.1582 41 1 4.4682 -1.7317 -3.7154 42 1 3.0809 -2.2141 -2.7298 43 1 2.7244 -3.4071 -4.6687 44 1 1.7346 -1.9609 -4.9472 45 1 4.1970 -3.3920 -7.6480 46 1 2.8272 -4.0026 -6.6841 47 1 -0.0489 -0.9414 -10.4647 48 1 0.9677 -1.2159 -7.2783 49 1 1.9398 -0.5619 -8.6256 50 1 1.9830 1.0725 -6.2135 51 1 1.5224 -0.3515 -5.2597 52 1 4.3659 0.4314 -4.9489 53 1 3.1906 1.6416 -4.3559 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946697071.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:42 Heat of formation + Delta-G solvation = -63.640340 kcal Electronic energy + Delta-G solvation = -31832.095676 eV Core-core repulsion = 27896.829817 eV Total energy + Delta-G solvation = -3935.265859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.30723 -40.65187 -39.30009 -37.38528 -35.33417 -34.63048 -33.44170 -32.56619 -32.27577 -29.28104 -28.92205 -28.66346 -26.68715 -25.86632 -24.39263 -24.16595 -23.10824 -22.02773 -21.77067 -20.04897 -19.59718 -18.92516 -18.06407 -17.61569 -16.92300 -16.86307 -16.53731 -16.37156 -16.03000 -15.81966 -15.48056 -15.29234 -14.98674 -14.66003 -14.48744 -14.35200 -13.99424 -13.71989 -13.69350 -13.48493 -13.38267 -13.19731 -13.07879 -12.86886 -12.78013 -12.72215 -12.60089 -12.42591 -12.26810 -12.14531 -12.02677 -11.82828 -11.82149 -11.74928 -11.57461 -11.38823 -11.07307 -10.99067 -10.78827 -10.70853 -10.58881 -9.66984 -8.84794 -7.79196 -5.20183 1.45317 1.45793 1.50345 1.56258 1.91067 2.49431 2.82778 3.32532 3.38007 3.51635 3.58637 3.69770 3.71635 3.81637 3.89655 3.98410 4.07827 4.12785 4.17590 4.24704 4.28533 4.36610 4.47685 4.50899 4.58186 4.63629 4.67899 4.68358 4.71185 4.75842 4.77756 4.87190 4.92130 4.97727 5.00071 5.01299 5.06983 5.07388 5.12742 5.14266 5.14905 5.23490 5.27952 5.32112 5.47914 5.52473 5.64606 5.76855 5.83014 5.86375 6.30042 6.49020 7.06894 7.13461 7.83883 8.44709 9.24625 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.002806 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.357594 B = 9977.992379 C =10016.296999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.090 3.910 3 H 0.063 0.937 4 O -0.384 6.384 5 C 0.040 3.960 6 C -0.143 4.143 7 C -0.106 4.106 8 C -0.142 4.142 9 C 0.531 3.469 10 O -0.580 6.580 11 N -0.599 5.599 12 C 0.097 3.903 13 C -0.122 4.122 14 C -0.078 4.078 15 H 0.102 0.898 16 C 0.135 3.865 17 N -0.625 5.625 18 C -0.237 4.237 19 H 0.082 0.918 20 C -0.069 4.069 21 N -0.950 5.950 22 Si 0.977 3.023 23 H -0.264 1.264 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.180 3.820 27 C -0.095 4.095 28 H 0.072 0.928 29 C -0.114 4.114 30 C 0.121 3.879 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.119 0.881 35 H 0.058 0.942 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.049 0.951 45 H 0.023 0.977 46 H 0.027 0.973 47 H 0.244 0.756 48 H -0.022 1.022 49 H 0.045 0.955 50 H 0.053 0.947 51 H 0.059 0.941 52 H 0.101 0.899 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.414 -1.564 21.493 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.032 3.968 3 H 0.081 0.919 4 O -0.303 6.303 5 C -0.036 4.036 6 C -0.180 4.180 7 C -0.109 4.109 8 C -0.199 4.199 9 C 0.320 3.680 10 O -0.460 6.460 11 N -0.330 5.330 12 C -0.026 4.026 13 C -0.160 4.160 14 C -0.097 4.097 15 H 0.120 0.880 16 C 0.010 3.990 17 N -0.351 5.351 18 C -0.366 4.366 19 H 0.100 0.900 20 C -0.262 4.262 21 N -0.600 5.600 22 Si 0.806 3.194 23 H -0.189 1.189 24 H -0.222 1.222 25 H -0.220 1.220 26 C 0.054 3.946 27 C -0.115 4.115 28 H 0.091 0.909 29 C -0.152 4.152 30 C 0.000 4.000 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.137 0.863 35 H 0.077 0.923 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.068 0.932 45 H 0.041 0.959 46 H 0.044 0.956 47 H 0.054 0.946 48 H -0.004 1.004 49 H 0.064 0.936 50 H 0.072 0.928 51 H 0.077 0.923 52 H 0.120 0.880 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 8.066 -0.992 21.622 23.099 hybrid contribution -0.817 0.097 -1.746 1.930 sum 7.250 -0.894 19.876 21.176 Atomic orbital electron populations 1.21846 0.92352 1.03611 1.02339 1.22839 0.96098 0.94770 0.83102 0.91902 1.89146 1.28341 1.74648 1.38206 1.23583 0.83845 1.00939 0.95226 1.23256 0.95961 1.02544 0.96265 1.22097 0.98860 0.96067 0.93908 1.22115 0.97439 0.97749 1.02575 1.20625 0.75914 0.88511 0.82910 1.90665 1.56152 1.18540 1.80667 1.47974 1.59583 1.10381 1.15099 1.21223 1.00994 0.80981 0.99446 1.21448 0.99625 1.01507 0.93466 1.21781 1.00639 0.93241 0.94009 0.87992 1.21379 0.92072 0.95626 0.89952 1.44537 1.51870 1.13709 1.24959 1.19502 1.20459 0.97661 0.98994 0.90038 1.25636 1.00564 0.97612 1.02351 1.70179 1.37281 1.13739 1.38801 0.85022 0.77309 0.78083 0.79025 1.18860 1.22169 1.21990 1.21111 0.92242 0.86126 0.95083 1.22244 0.97817 0.95688 0.95743 0.90933 1.21711 0.98710 0.98915 0.95898 1.22190 0.99501 0.94788 0.83559 0.90239 0.91574 0.91851 0.86323 0.92331 0.86854 0.89172 0.90128 0.89279 0.92909 0.89342 0.87398 0.89289 0.93210 0.95874 0.95552 0.94638 1.00392 0.93646 0.92796 0.92274 0.88048 0.90246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.47 71.98 0.61 -2.23 16 2 C 0.09 1.93 3.17 31.10 0.10 2.03 16 3 H 0.06 1.64 6.97 -2.39 -0.02 1.62 16 4 O -0.38 -7.82 11.35 -148.98 -1.69 -9.51 16 5 C 0.04 0.56 7.64 72.49 0.55 1.11 16 6 C -0.14 -1.80 4.62 31.61 0.15 -1.65 16 7 C -0.11 -1.99 0.60 -51.91 -0.03 -2.02 16 8 C -0.14 -2.40 6.78 71.98 0.49 -1.91 16 9 C 0.53 13.18 6.40 87.66 0.56 13.74 16 10 O -0.58 -18.94 15.17 -3.05 -0.05 -18.99 16 11 N -0.60 -13.15 2.60 -823.77 -2.14 -15.29 16 12 C 0.10 1.63 3.99 86.52 0.34 1.97 16 13 C -0.12 -2.83 4.36 29.57 0.13 -2.70 16 14 C -0.08 -2.21 2.79 -10.30 -0.03 -2.24 16 15 H 0.10 2.25 7.67 -2.39 -0.02 2.23 16 16 C 0.13 5.10 6.82 86.49 0.59 5.69 16 17 N -0.63 -31.54 3.38 -698.52 -2.36 -33.89 16 18 C -0.24 -13.21 10.25 84.03 0.86 -12.35 16 19 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 20 C -0.07 -3.95 5.48 84.86 0.47 -3.48 16 21 N -0.95 -57.48 10.16 21.65 0.22 -57.26 16 22 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 23 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 25 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 26 C 0.18 8.75 5.12 86.70 0.44 9.20 16 27 C -0.10 -3.27 2.93 -9.86 -0.03 -3.30 16 28 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 29 C -0.11 -3.47 4.50 30.19 0.14 -3.33 16 30 C 0.12 2.92 6.17 85.76 0.53 3.45 16 31 H 0.08 1.35 6.48 -2.39 -0.02 1.34 16 32 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 33 H 0.06 1.36 7.82 -2.39 -0.02 1.34 16 34 H 0.12 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.11 0.92 7.29 -2.39 -0.02 0.91 16 37 H 0.09 1.04 6.99 -2.39 -0.02 1.02 16 38 H 0.08 1.23 5.15 -2.39 -0.01 1.22 16 39 H 0.09 1.25 7.22 -2.39 -0.02 1.23 16 40 H 0.05 1.05 7.29 -2.38 -0.02 1.04 16 41 H 0.09 1.14 7.67 -2.39 -0.02 1.12 16 42 H 0.11 1.38 2.91 -2.39 -0.01 1.37 16 43 H 0.09 1.82 7.53 -2.39 -0.02 1.80 16 44 H 0.05 1.47 5.86 -2.39 -0.01 1.46 16 45 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.03 0.98 7.40 -2.39 -0.02 0.96 16 47 H 0.24 14.40 8.31 -92.71 -0.77 13.63 16 48 H -0.02 -1.20 7.72 -2.39 -0.02 -1.21 16 49 H 0.05 2.59 6.20 -2.39 -0.01 2.58 16 50 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 51 H 0.06 1.99 5.47 -2.39 -0.01 1.98 16 52 H 0.10 2.01 7.81 -2.39 -0.02 1.99 16 53 H 0.08 2.09 7.31 -2.38 -0.02 2.08 16 Total: -1.00 -72.88 377.37 2.78 -70.10 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: 0.90 Total: 14.97 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 5.87 Total: 1.98 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -4.28 Total: -106.44 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -1.74 Total: -28.50 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -72.88 2.78 -70.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946697071.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.459 kcal (2) G-P(sol) polarization free energy of solvation -72.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds