Wall clock time and date at job start Tue Mar 31 2020 20:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.87158 * 2 1 4 4 O 1.43748 * 109.87627 * 238.83817 * 2 1 3 5 5 C 1.44374 * 106.97632 * 267.08786 * 4 2 1 6 6 C 1.55349 * 103.50353 * 319.90944 * 5 4 2 7 7 C 1.54102 * 109.88238 * 121.00789 * 2 1 3 8 8 C 1.52993 * 110.49005 * 236.20440 * 7 2 1 9 9 C 1.50701 * 110.48516 * 358.71708 * 7 2 1 10 10 O 1.21280 * 120.00229 * 114.99611 * 9 7 2 11 11 N 1.34774 * 119.99910 * 294.99829 * 9 7 2 12 12 C 1.49724 * 122.75871 * 177.78911 * 11 9 7 13 13 C 1.53161 * 105.60178 * 111.34098 * 12 11 9 14 14 C 1.50957 * 111.96092 * 99.83566 * 13 12 11 15 15 H 1.08998 * 109.52444 * 58.24835 * 14 13 12 16 16 C 1.53589 * 111.30870 * 178.51035 * 14 13 12 17 17 N 1.47181 * 105.64804 * 150.28966 * 16 14 13 18 18 C 1.36940 * 126.09595 * 149.71917 * 17 16 14 19 19 H 1.08006 * 120.00060 * 347.03335 * 18 17 16 20 20 C 1.38805 * 119.99889 * 167.02891 * 18 17 16 21 21 N 1.31614 * 120.00424 * 357.77216 * 20 18 17 22 22 Si 1.86805 * 119.99986 * 177.76859 * 20 18 17 23 23 H 1.48501 * 109.47146 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47122 * 119.99933 * 22 20 18 25 25 H 1.48499 * 109.46949 * 240.00426 * 22 20 18 26 26 C 1.46773 * 107.80387 * 329.73799 * 17 16 14 27 27 C 1.53836 * 107.90866 * 20.29903 * 26 17 16 28 28 H 1.08992 * 111.00963 * 117.82111 * 27 26 17 29 29 C 1.51867 * 109.23006 * 241.13034 * 27 26 17 30 30 C 1.43640 * 122.75942 * 357.50220 * 11 9 7 31 31 H 1.09009 * 109.46768 * 316.31592 * 1 2 3 32 32 H 1.09001 * 109.47227 * 76.31654 * 1 2 3 33 33 H 1.09001 * 109.47316 * 196.31853 * 1 2 3 34 34 H 1.09006 * 110.61734 * 78.44096 * 5 4 2 35 35 H 1.09005 * 110.62279 * 201.28237 * 5 4 2 36 36 H 1.08995 * 110.95980 * 278.91662 * 6 5 4 37 37 H 1.08998 * 111.00909 * 155.20787 * 6 5 4 38 38 H 1.08999 * 109.47035 * 205.90073 * 8 7 2 39 39 H 1.08997 * 109.47064 * 325.89614 * 8 7 2 40 40 H 1.08999 * 109.47860 * 85.89771 * 8 7 2 41 41 H 1.08998 * 110.21901 * 230.36351 * 12 11 9 42 42 H 1.09006 * 110.21142 * 352.18648 * 12 11 9 43 43 H 1.09004 * 108.98948 * 220.47713 * 13 12 11 44 44 H 1.09010 * 108.98154 * 339.19751 * 13 12 11 45 45 H 1.08995 * 110.20901 * 269.33433 * 16 14 13 46 46 H 1.08992 * 110.21420 * 31.24793 * 16 14 13 47 47 H 0.97000 * 120.00334 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.77857 * 260.68204 * 26 17 16 49 49 H 1.09000 * 109.77807 * 139.90386 * 26 17 16 50 50 H 1.09004 * 108.91257 * 320.65661 * 29 27 26 51 51 H 1.08996 * 108.91663 * 79.29221 * 29 27 26 52 52 H 1.09004 * 108.42284 * 359.60075 * 30 11 9 53 53 H 1.08989 * 108.43117 * 116.86403 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 8 2.0187 -0.6995 -1.1568 5 6 2.2280 -2.0724 -0.7620 6 6 2.8346 -1.9516 0.6630 7 6 2.0541 -0.7465 1.2421 8 6 2.9858 0.1545 2.0549 9 6 0.9062 -1.2222 2.0948 10 8 0.7116 -2.4102 2.2420 11 7 0.0958 -0.3274 2.6939 12 6 -1.0901 -0.7304 3.5143 13 6 -0.7368 -0.3615 4.9582 14 6 -1.3711 0.9421 5.3791 15 1 -2.4538 0.8707 5.2750 16 6 -1.0375 1.2790 6.8400 17 7 -1.0376 2.7487 6.9184 18 6 -1.3656 3.4980 8.0167 19 1 -1.8545 3.0340 8.8606 20 6 -1.0698 4.8539 8.0454 21 7 -0.4348 5.4104 7.0358 22 14 -1.5729 5.8887 9.5169 23 1 -2.2680 5.0315 10.5105 24 1 -0.3637 6.4857 10.1389 25 1 -2.4864 6.9714 9.0715 26 6 -0.6240 3.2680 5.6094 27 6 -0.8513 2.1594 4.5674 28 1 -1.5801 2.4701 3.8189 29 6 0.4774 1.7918 3.9302 30 6 0.3022 1.0912 2.6029 31 1 -0.3633 0.7432 0.7099 32 1 -0.3634 0.2431 -0.9985 33 1 -0.3634 -0.9863 0.2887 34 1 1.2812 -2.6118 -0.7321 35 1 2.9273 -2.5640 -1.4384 36 1 3.9021 -1.7369 0.6155 37 1 2.6462 -2.8533 1.2457 38 1 3.6831 -0.4618 2.6225 39 1 3.5421 0.8049 1.3800 40 1 2.3962 0.7621 2.7413 41 1 -1.9753 -0.1825 3.1914 42 1 -1.2602 -1.8037 3.4285 43 1 -1.0823 -1.1544 5.6216 44 1 0.3461 -0.2738 5.0469 45 1 -1.7965 0.8663 7.5044 46 1 -0.0542 0.8881 7.1015 47 1 -0.2284 6.3580 7.0557 48 1 0.4317 3.5380 5.6366 49 1 -1.2221 4.1426 5.3538 50 1 1.0589 2.7008 3.7761 51 1 1.0234 1.1339 4.6063 52 1 1.1909 1.2719 1.9982 53 1 -0.5532 1.5317 2.0911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946697073.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:51 Heat of formation + Delta-G solvation = -45.649102 kcal Electronic energy + Delta-G solvation = -32098.674854 eV Core-core repulsion = 28164.189153 eV Total energy + Delta-G solvation = -3934.485701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.60714 -40.61000 -39.21666 -37.47701 -35.41610 -34.51923 -33.31228 -32.71861 -31.91352 -29.74481 -29.12685 -28.83410 -26.40409 -25.43335 -24.42804 -24.12392 -22.81264 -22.51453 -22.03005 -19.98685 -19.62858 -18.83253 -18.35090 -17.54805 -17.24297 -16.81064 -16.69896 -16.18854 -15.93964 -15.67628 -15.43808 -15.21893 -14.81809 -14.64261 -14.58644 -14.15991 -14.10544 -13.89585 -13.73997 -13.41018 -13.30981 -13.23347 -13.04924 -13.01513 -12.87391 -12.78826 -12.54318 -12.26766 -12.21187 -12.10896 -11.94528 -11.86749 -11.81080 -11.74978 -11.53758 -11.27900 -11.12777 -10.97461 -10.71558 -10.66356 -10.60745 -9.65464 -8.83014 -7.87155 -5.22911 1.45859 1.46181 1.52717 1.56561 1.91357 2.49195 2.88575 3.25046 3.31695 3.41994 3.63936 3.74714 3.75721 3.84756 3.92213 3.97551 4.04766 4.10808 4.14312 4.22863 4.24972 4.31777 4.48242 4.50570 4.57852 4.64518 4.65692 4.67320 4.71353 4.78417 4.80268 4.85003 4.90826 4.94941 4.99386 4.99745 5.04047 5.05610 5.12343 5.16420 5.22129 5.24561 5.28957 5.34197 5.47169 5.53593 5.59266 5.80247 5.83529 5.84576 6.24772 6.49244 7.08819 7.12423 7.79439 8.47264 9.24375 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025567 B = 0.002848 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.890230 B = 9829.011944 C =10270.153430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.087 3.913 3 H 0.122 0.878 4 O -0.382 6.382 5 C 0.045 3.955 6 C -0.135 4.135 7 C -0.112 4.112 8 C -0.157 4.157 9 C 0.542 3.458 10 O -0.577 6.577 11 N -0.601 5.601 12 C 0.119 3.881 13 C -0.114 4.114 14 C -0.082 4.082 15 H 0.070 0.930 16 C 0.134 3.866 17 N -0.624 5.624 18 C -0.244 4.244 19 H 0.075 0.925 20 C -0.061 4.061 21 N -0.944 5.944 22 Si 0.975 3.025 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.187 3.813 27 C -0.091 4.091 28 H 0.085 0.915 29 C -0.119 4.119 30 C 0.093 3.907 31 H 0.096 0.904 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.049 0.951 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.009 0.991 47 H 0.248 0.752 48 H -0.001 1.001 49 H 0.021 0.979 50 H 0.076 0.924 51 H 0.061 0.939 52 H 0.108 0.892 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -12.553 -16.299 21.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.029 3.971 3 H 0.140 0.860 4 O -0.301 6.301 5 C -0.031 4.031 6 C -0.173 4.173 7 C -0.115 4.115 8 C -0.214 4.214 9 C 0.332 3.668 10 O -0.457 6.457 11 N -0.332 5.332 12 C -0.003 4.003 13 C -0.153 4.153 14 C -0.102 4.102 15 H 0.089 0.911 16 C 0.008 3.992 17 N -0.349 5.349 18 C -0.373 4.373 19 H 0.093 0.907 20 C -0.254 4.254 21 N -0.593 5.593 22 Si 0.803 3.197 23 H -0.193 1.193 24 H -0.219 1.219 25 H -0.217 1.217 26 C 0.062 3.938 27 C -0.110 4.110 28 H 0.103 0.897 29 C -0.158 4.158 30 C -0.030 4.030 31 H 0.115 0.885 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.058 0.942 46 H 0.027 0.973 47 H 0.057 0.943 48 H 0.017 0.983 49 H 0.039 0.961 50 H 0.094 0.906 51 H 0.080 0.920 52 H 0.125 0.875 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.662 -12.896 -16.353 21.342 hybrid contribution -0.346 0.754 1.495 1.710 sum 4.316 -12.142 -14.857 19.667 Atomic orbital electron populations 1.22870 0.95473 1.02643 1.04051 1.22992 0.94181 0.97187 0.82730 0.85994 1.88898 1.86106 1.21586 1.33538 1.23679 1.00099 0.83677 0.95615 1.23240 1.00602 0.97338 0.96112 1.22246 0.94661 0.98542 0.96042 1.22335 0.99051 0.99371 1.00664 1.20313 0.82478 0.85213 0.78787 1.90649 1.73246 1.17601 1.64174 1.48037 1.27706 1.06856 1.50636 1.22286 0.87702 1.01400 0.88868 1.21567 1.01195 0.96054 0.96466 1.21673 1.00154 0.94154 0.94189 0.91132 1.21460 0.97214 0.84435 0.96062 1.44661 1.79526 1.01180 1.09493 1.19419 1.31384 0.91318 0.95224 0.90681 1.25660 1.00571 0.98442 1.00763 1.70140 1.46019 1.10917 1.32195 0.85070 0.77066 0.78535 0.79012 1.19278 1.21901 1.21709 1.20924 0.95914 0.93570 0.83427 1.22108 0.97302 0.94735 0.96892 0.89650 1.21462 0.97100 1.00561 0.96637 1.21182 1.04364 0.79959 0.97464 0.88539 0.91192 0.94087 0.93290 0.86779 0.87984 0.89775 0.91367 0.88865 0.90342 0.88733 0.89754 0.90911 0.91703 0.94241 0.97283 0.94318 0.98264 0.96067 0.90598 0.92022 0.87461 0.89778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.44 8.09 71.98 0.58 -2.86 16 2 C 0.09 1.50 2.86 30.97 0.09 1.59 16 3 H 0.12 1.65 7.11 -2.39 -0.02 1.63 16 4 O -0.38 -7.66 11.19 -148.98 -1.67 -9.32 16 5 C 0.05 0.80 7.68 72.79 0.56 1.36 16 6 C -0.14 -2.37 6.04 32.02 0.19 -2.18 16 7 C -0.11 -2.04 0.62 -51.94 -0.03 -2.07 16 8 C -0.16 -2.42 7.88 71.98 0.57 -1.85 16 9 C 0.54 12.72 4.53 87.66 0.40 13.11 16 10 O -0.58 -17.42 15.12 -3.03 -0.05 -17.46 16 11 N -0.60 -12.61 1.92 -823.70 -1.59 -14.20 16 12 C 0.12 2.56 6.25 85.81 0.54 3.09 16 13 C -0.11 -2.85 4.57 29.98 0.14 -2.71 16 14 C -0.08 -2.51 2.61 -10.48 -0.03 -2.54 16 15 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 16 C 0.13 5.37 6.71 86.45 0.58 5.95 16 17 N -0.62 -31.55 3.37 -696.83 -2.35 -33.90 16 18 C -0.24 -13.66 10.27 84.03 0.86 -12.80 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.06 -3.42 5.46 84.86 0.46 -2.96 16 21 N -0.94 -55.67 10.60 21.65 0.23 -55.44 16 22 Si 0.97 45.35 29.55 68.60 2.03 47.38 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 26 C 0.19 8.68 4.98 86.61 0.43 9.11 16 27 C -0.09 -2.90 3.12 -10.10 -0.03 -2.93 16 28 H 0.09 2.46 7.80 -2.39 -0.02 2.45 16 29 C -0.12 -3.04 3.82 29.60 0.11 -2.92 16 30 C 0.09 1.75 2.74 86.29 0.24 1.98 16 31 H 0.10 1.51 3.97 -2.38 -0.01 1.50 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 0.89 6.54 -2.39 -0.02 0.87 16 34 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.10 1.41 7.87 -2.39 -0.02 1.39 16 37 H 0.08 1.76 6.85 -2.39 -0.02 1.74 16 38 H 0.07 1.06 8.01 -2.39 -0.02 1.04 16 39 H 0.09 1.08 7.67 -2.39 -0.02 1.06 16 40 H 0.08 1.30 4.29 -2.39 -0.01 1.29 16 41 H 0.09 1.78 7.84 -2.39 -0.02 1.76 16 42 H 0.08 1.93 7.33 -2.38 -0.02 1.91 16 43 H 0.07 1.72 8.14 -2.38 -0.02 1.71 16 44 H 0.06 1.78 5.58 -2.38 -0.01 1.76 16 45 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.01 0.38 7.96 -2.39 -0.02 0.37 16 47 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 48 H 0.00 -0.03 7.14 -2.39 -0.02 -0.05 16 49 H 0.02 1.12 7.09 -2.39 -0.02 1.10 16 50 H 0.08 1.98 7.66 -2.38 -0.02 1.96 16 51 H 0.06 1.73 5.78 -2.39 -0.01 1.72 16 52 H 0.11 1.65 3.26 -2.39 -0.01 1.64 16 53 H 0.08 1.39 6.22 -2.39 -0.01 1.38 16 Total: -1.00 -69.56 372.27 3.18 -66.38 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.91 Total: 16.17 kcal Atomic # 6 Polarization: -5.27 SS G_CDS: 5.66 Total: 0.39 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -3.70 Total: -103.54 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -1.71 Total: -26.78 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -69.56 3.18 -66.38 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946697073.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.731 kcal (2) G-P(sol) polarization free energy of solvation -69.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds