Wall clock time and date at job start Tue Mar 31 2020 20:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09006 * 110.27397 * 2 1 4 4 C 1.54949 * 110.31078 * 122.08724 * 2 1 3 5 5 C 1.55300 * 100.94486 * 155.36145 * 4 2 1 6 6 C 1.54383 * 102.25289 * 325.86897 * 5 4 2 7 7 H 1.08992 * 109.83254 * 261.75191 * 6 5 4 8 8 C 1.53005 * 109.83076 * 140.86599 * 6 5 4 9 9 C 1.50705 * 109.47269 * 174.99916 * 8 6 5 10 10 O 1.21282 * 119.99556 * 0.02562 * 9 8 6 11 11 N 1.34765 * 120.00043 * 180.02562 * 9 8 6 12 12 C 1.43508 * 122.55448 * 359.97438 * 11 9 8 13 13 C 1.51721 * 114.26148 * 122.96059 * 12 11 9 14 14 C 1.51157 * 111.88807 * 82.64903 * 13 12 11 15 15 H 1.08996 * 110.70420 * 33.99995 * 14 13 12 16 16 C 1.53407 * 110.93102 * 156.75340 * 14 13 12 17 17 N 1.46602 * 108.10776 * 102.74717 * 16 14 13 18 18 C 1.36929 * 125.31709 * 178.67984 * 17 16 14 19 19 H 1.07997 * 120.00683 * 0.02562 * 18 17 16 20 20 C 1.38813 * 120.00036 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00198 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00293 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47376 * 89.99687 * 22 20 18 24 24 H 1.48497 * 109.47059 * 210.00398 * 22 20 18 25 25 H 1.48502 * 109.46896 * 329.99962 * 22 20 18 26 26 C 1.46657 * 109.36437 * 358.64774 * 17 16 14 27 27 C 1.54046 * 106.94015 * 18.27506 * 26 17 16 28 28 H 1.09007 * 110.61639 * 91.15403 * 27 26 17 29 29 C 1.51845 * 109.44467 * 214.15137 * 27 26 17 30 30 C 1.49548 * 122.55083 * 180.02562 * 11 9 8 31 31 O 1.43239 * 107.59077 * 21.35915 * 6 5 4 32 32 H 1.08995 * 109.47796 * 297.91222 * 1 2 3 33 33 H 1.09011 * 109.47106 * 57.91260 * 1 2 3 34 34 H 1.08999 * 109.47329 * 177.90880 * 1 2 3 35 35 H 1.09000 * 111.11930 * 37.44465 * 4 2 1 36 36 H 1.08997 * 111.16064 * 273.30118 * 4 2 1 37 37 H 1.08997 * 110.85091 * 207.67824 * 5 4 2 38 38 H 1.09006 * 110.84852 * 84.05892 * 5 4 2 39 39 H 1.09004 * 109.46948 * 55.00121 * 8 6 5 40 40 H 1.08997 * 109.47226 * 295.00283 * 8 6 5 41 41 H 1.09005 * 108.52605 * 244.19557 * 12 11 9 42 42 H 1.09003 * 108.52691 * 1.87929 * 12 11 9 43 43 H 1.09002 * 108.99408 * 322.02990 * 13 12 11 44 44 H 1.09004 * 109.00064 * 203.27491 * 13 12 11 45 45 H 1.08998 * 109.74224 * 222.41615 * 16 14 13 46 46 H 1.08999 * 109.74274 * 343.07103 * 16 14 13 47 47 H 0.96999 * 120.00619 * 180.02562 * 21 20 18 48 48 H 1.09000 * 109.96942 * 137.64661 * 26 17 16 49 49 H 1.09000 * 109.96954 * 258.90753 * 26 17 16 50 50 H 1.09007 * 109.01055 * 295.52295 * 29 27 26 51 51 H 1.09006 * 109.01083 * 54.30463 * 29 27 26 52 52 H 1.09004 * 110.26706 * 131.21645 * 30 11 9 53 53 H 1.09002 * 110.38800 * 9.18183 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0677 -0.7719 1.2312 5 6 3.4698 -1.2018 0.7202 6 6 3.2112 -1.4427 -0.7826 7 1 3.0640 -2.5068 -0.9666 8 6 4.3991 -0.9339 -1.6018 9 6 4.1944 -1.2826 -3.0536 10 8 3.1964 -1.8789 -3.3991 11 7 5.1203 -0.9318 -3.9679 12 6 6.3201 -0.2254 -3.6202 13 6 7.5997 -0.9328 -4.0252 14 6 7.9505 -0.6778 -5.4732 15 1 7.6525 0.3276 -5.7706 16 6 9.4512 -0.8814 -5.7176 17 7 9.6341 -2.1806 -6.3718 18 6 10.8347 -2.7031 -6.7723 19 1 11.7463 -2.1466 -6.6123 20 6 10.8804 -3.9488 -7.3831 21 7 9.7696 -4.6274 -7.5778 22 14 12.5184 -4.6620 -7.9289 23 1 13.1047 -5.4592 -6.8218 24 1 12.3085 -5.5359 -9.1110 25 1 13.4441 -3.5577 -8.2879 26 6 8.3304 -2.8335 -6.5296 27 6 7.2585 -1.7370 -6.3820 28 1 7.0129 -1.3071 -7.3531 29 6 6.0283 -2.3199 -5.7094 30 6 4.9751 -1.2482 -5.4223 31 8 2.0286 -0.7178 -1.1400 32 1 -0.3634 0.4810 0.9080 33 1 -0.3634 0.5460 -0.8708 34 1 -0.3634 -1.0270 -0.0375 35 1 1.4470 -1.6402 1.4522 36 1 2.1494 -0.1190 2.1001 37 1 3.7965 -2.1194 1.2095 38 1 4.1974 -0.4032 0.8655 39 1 5.3157 -1.4012 -1.2416 40 1 4.4770 0.1481 -1.4955 41 1 6.2979 0.7526 -4.1011 42 1 6.3350 -0.0787 -2.5401 43 1 7.4755 -2.0051 -3.8737 44 1 8.4155 -0.5791 -3.3948 45 1 9.8303 -0.0881 -6.3618 46 1 9.9840 -0.8695 -4.7668 47 1 9.8015 -5.4980 -8.0043 48 1 8.2606 -3.2918 -7.5160 49 1 8.1972 -3.5905 -5.7567 50 1 5.5940 -3.0791 -6.3601 51 1 6.3248 -2.7870 -4.7702 52 1 5.1674 -0.3592 -6.0231 53 1 3.9769 -1.6342 -5.6292 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946758625.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:58 Heat of formation + Delta-G solvation = -78.303728 kcal Electronic energy + Delta-G solvation = -30495.338169 eV Core-core repulsion = 26559.436457 eV Total energy + Delta-G solvation = -3935.901712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.58209 -40.58623 -39.57144 -37.24223 -34.87997 -34.02859 -33.32274 -33.12715 -32.38065 -30.39946 -28.92010 -28.76361 -26.26037 -25.38480 -24.22517 -23.60853 -22.35827 -21.94759 -21.72701 -20.12757 -19.64607 -18.92506 -18.18012 -17.95372 -16.96212 -16.94238 -16.73658 -16.42519 -16.01028 -15.53307 -15.27828 -15.02857 -14.84554 -14.57470 -14.44976 -14.19161 -14.09900 -13.80892 -13.67814 -13.46515 -13.37780 -13.06185 -12.92384 -12.82641 -12.71417 -12.65128 -12.53517 -12.46785 -12.35180 -12.06839 -12.00680 -11.82347 -11.75660 -11.69035 -11.60847 -11.38900 -11.08006 -10.98735 -10.70986 -10.68050 -10.41288 -9.58368 -8.85918 -7.79412 -5.20948 1.44448 1.46497 1.55368 1.71622 2.05327 2.49183 2.90037 3.31888 3.55622 3.64316 3.71126 3.74627 3.83731 3.87593 3.90448 4.00216 4.10278 4.20086 4.22677 4.26650 4.28177 4.43446 4.48016 4.51042 4.62140 4.65431 4.69423 4.69629 4.73676 4.78129 4.83290 4.89793 4.94406 4.99872 5.01857 5.08836 5.09742 5.13560 5.14307 5.15583 5.26127 5.29105 5.29699 5.35968 5.47661 5.57233 5.64214 5.76685 5.85560 6.28557 6.29221 6.61592 7.12495 7.26357 7.82979 8.44346 9.24367 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026796 B = 0.002228 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.700446 B =12563.254401 C =12668.264933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 H 0.077 0.923 4 C -0.146 4.146 5 C -0.144 4.144 6 C 0.091 3.909 7 H 0.058 0.942 8 C -0.144 4.144 9 C 0.514 3.486 10 O -0.580 6.580 11 N -0.612 5.612 12 C 0.110 3.890 13 C -0.121 4.121 14 C -0.079 4.079 15 H 0.101 0.899 16 C 0.134 3.866 17 N -0.626 5.626 18 C -0.238 4.238 19 H 0.083 0.917 20 C -0.072 4.072 21 N -0.952 5.952 22 Si 0.980 3.020 23 H -0.287 1.287 24 H -0.296 1.296 25 H -0.267 1.267 26 C 0.179 3.821 27 C -0.096 4.096 28 H 0.071 0.929 29 C -0.111 4.111 30 C 0.122 3.878 31 O -0.393 6.393 32 H 0.091 0.909 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.083 0.917 42 H 0.105 0.895 43 H 0.047 0.953 44 H 0.090 0.910 45 H 0.023 0.977 46 H 0.027 0.973 47 H 0.244 0.756 48 H 0.046 0.954 49 H -0.023 1.023 50 H 0.051 0.949 51 H 0.058 0.942 52 H 0.097 0.903 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.954 14.502 19.327 27.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.002 3.998 3 H 0.095 0.905 4 C -0.183 4.183 5 C -0.182 4.182 6 C 0.033 3.967 7 H 0.076 0.924 8 C -0.183 4.183 9 C 0.304 3.696 10 O -0.460 6.460 11 N -0.344 5.344 12 C -0.013 4.013 13 C -0.159 4.159 14 C -0.097 4.097 15 H 0.119 0.881 16 C 0.009 3.991 17 N -0.351 5.351 18 C -0.367 4.367 19 H 0.101 0.899 20 C -0.264 4.264 21 N -0.601 5.601 22 Si 0.808 3.192 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.191 1.191 26 C 0.054 3.946 27 C -0.116 4.116 28 H 0.089 0.911 29 C -0.150 4.150 30 C 0.000 4.000 31 O -0.314 6.314 32 H 0.110 0.890 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.101 0.899 42 H 0.123 0.877 43 H 0.066 0.934 44 H 0.108 0.892 45 H 0.041 0.959 46 H 0.045 0.955 47 H 0.054 0.946 48 H 0.064 0.936 49 H -0.005 1.005 50 H 0.069 0.931 51 H 0.077 0.923 52 H 0.115 0.885 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.495 14.041 18.887 27.641 hybrid contribution 1.090 -1.301 -0.854 1.900 sum -13.405 12.740 18.033 25.830 Atomic orbital electron populations 1.21885 0.93711 1.02252 1.02839 1.23224 0.95277 0.96005 0.85291 0.90478 1.23312 0.95749 1.00963 0.98310 1.23196 0.98546 1.04123 0.92292 1.22493 0.84336 0.95425 0.94495 0.92419 1.22223 1.01008 1.05267 0.89847 1.21157 0.81658 0.77766 0.88990 1.90690 1.30358 1.42816 1.82120 1.48146 1.20792 1.57775 1.07721 1.20865 0.82594 0.95072 1.02808 1.21427 0.98053 1.01044 0.95424 1.21790 0.93244 0.99210 0.95481 0.88120 1.21401 0.95532 0.87024 0.95098 1.44548 1.03291 1.17896 1.69415 1.19476 0.85841 1.00194 1.31200 0.89947 1.25687 1.00691 0.97881 1.02159 1.70177 1.26562 1.13806 1.49598 0.85055 0.78993 0.78103 0.77067 1.21407 1.22216 1.19128 1.21130 0.83227 0.91697 0.98549 1.22247 0.94428 0.96423 0.98486 0.91068 1.21690 0.94772 0.98163 1.00338 1.22104 0.98513 0.98576 0.80829 1.88606 1.42716 1.64786 1.35260 0.89042 0.93056 0.93059 0.90749 0.87591 0.88816 0.88111 0.85521 0.86140 0.89855 0.87654 0.93443 0.89192 0.95862 0.95482 0.94597 0.93622 1.00495 0.93062 0.92296 0.88469 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.62 71.98 0.69 -1.46 16 2 C 0.06 0.92 4.07 31.26 0.13 1.05 16 3 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 4 C -0.15 -1.56 6.57 32.05 0.21 -1.35 16 5 C -0.14 -1.58 6.54 31.85 0.21 -1.37 16 6 C 0.09 1.78 3.04 31.07 0.09 1.87 16 7 H 0.06 1.42 7.94 -2.39 -0.02 1.40 16 8 C -0.14 -2.49 3.67 29.85 0.11 -2.38 16 9 C 0.51 13.86 7.65 87.66 0.67 14.53 16 10 O -0.58 -21.28 15.18 8.35 0.13 -21.15 16 11 N -0.61 -14.86 2.61 -823.65 -2.15 -17.01 16 12 C 0.11 1.99 5.68 86.51 0.49 2.48 16 13 C -0.12 -2.98 4.77 29.57 0.14 -2.84 16 14 C -0.08 -2.36 2.77 -10.30 -0.03 -2.39 16 15 H 0.10 2.42 7.70 -2.39 -0.02 2.40 16 16 C 0.13 5.26 6.82 86.50 0.59 5.85 16 17 N -0.63 -32.39 3.38 -698.53 -2.36 -34.74 16 18 C -0.24 -13.49 10.25 84.03 0.86 -12.63 16 19 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 20 C -0.07 -4.17 5.48 84.86 0.47 -3.70 16 21 N -0.95 -58.60 10.16 21.65 0.22 -58.38 16 22 Si 0.98 46.45 29.55 68.60 2.03 48.48 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 C 0.18 9.02 5.13 86.70 0.44 9.46 16 27 C -0.10 -3.50 2.93 -9.86 -0.03 -3.52 16 28 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 29 C -0.11 -3.65 4.50 30.21 0.14 -3.52 16 30 C 0.12 3.30 6.17 85.78 0.53 3.83 16 31 O -0.39 -9.60 10.07 -137.59 -1.39 -10.99 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.86 8.06 -2.39 -0.02 0.84 16 36 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 0.69 7.85 -2.38 -0.02 0.67 16 39 H 0.13 1.58 7.83 -2.39 -0.02 1.56 16 40 H 0.12 1.51 7.90 -2.39 -0.02 1.49 16 41 H 0.08 1.24 7.69 -2.38 -0.02 1.22 16 42 H 0.11 1.26 5.99 -2.39 -0.01 1.25 16 43 H 0.05 1.48 5.87 -2.39 -0.01 1.46 16 44 H 0.09 1.93 7.53 -2.39 -0.02 1.91 16 45 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.03 1.03 7.40 -2.39 -0.02 1.01 16 47 H 0.24 14.68 8.31 -92.71 -0.77 13.91 16 48 H 0.05 2.67 6.19 -2.39 -0.01 2.66 16 49 H -0.02 -1.29 7.72 -2.39 -0.02 -1.31 16 50 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 51 H 0.06 2.11 5.48 -2.38 -0.01 2.10 16 52 H 0.10 2.23 7.81 -2.38 -0.02 2.21 16 53 H 0.07 2.22 7.32 -2.39 -0.02 2.20 16 Total: -1.00 -78.75 393.63 3.07 -75.69 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.87 Total: 14.19 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 5.71 Total: 3.92 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -4.29 Total: -110.13 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -1.26 Total: -32.14 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -78.75 3.07 -75.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946758625.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.618 kcal (2) G-P(sol) polarization free energy of solvation -78.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds