Wall clock time and date at job start Tue Mar 31 2020 20:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.99188 * 2 1 4 4 C 1.54095 * 109.88215 * 121.08829 * 2 1 3 5 5 C 1.54812 * 104.18874 * 121.45798 * 4 2 1 6 6 C 1.55001 * 102.09150 * 20.87585 * 5 4 2 7 7 H 1.09003 * 110.74953 * 81.54599 * 6 5 4 8 8 C 1.53000 * 110.61673 * 204.47638 * 6 5 4 9 9 C 1.50703 * 109.46912 * 180.52787 * 8 6 5 10 10 O 1.21278 * 119.99985 * 359.97438 * 9 8 6 11 11 N 1.34777 * 120.00161 * 180.02562 * 9 8 6 12 12 C 1.43511 * 122.54363 * 359.71064 * 11 9 8 13 13 C 1.50826 * 113.96062 * 123.14334 * 12 11 9 14 14 C 1.51155 * 112.53652 * 82.74171 * 13 12 11 15 15 H 1.09004 * 110.22878 * 33.78878 * 14 13 12 16 16 C 1.53399 * 111.44349 * 156.56247 * 14 13 12 17 17 N 1.46612 * 108.10733 * 102.99688 * 16 14 13 18 18 C 1.36936 * 125.32342 * 178.64549 * 17 16 14 19 19 H 1.07997 * 120.00007 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00115 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00224 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00257 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.46741 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47354 * 119.99492 * 22 20 18 25 25 H 1.48502 * 109.47154 * 239.99629 * 22 20 18 26 26 C 1.46673 * 109.35496 * 358.64476 * 17 16 14 27 27 C 1.54040 * 106.94043 * 18.30273 * 26 17 16 28 28 H 1.09000 * 111.48379 * 91.52369 * 27 26 17 29 29 C 1.51836 * 109.45449 * 214.13222 * 27 26 17 30 30 C 1.49543 * 122.54725 * 179.97438 * 11 9 8 31 31 O 1.43743 * 109.87704 * 238.92371 * 2 1 3 32 32 H 1.09004 * 109.46650 * 179.63000 * 1 2 3 33 33 H 1.08999 * 109.47143 * 299.62390 * 1 2 3 34 34 H 1.08999 * 109.47607 * 59.62619 * 1 2 3 35 35 H 1.09005 * 110.48925 * 240.12644 * 4 2 1 36 36 H 1.08991 * 110.48887 * 2.77733 * 4 2 1 37 37 H 1.09007 * 110.90521 * 262.68641 * 5 4 2 38 38 H 1.08997 * 110.91190 * 139.07595 * 5 4 2 39 39 H 1.09002 * 109.47398 * 300.52865 * 8 6 5 40 40 H 1.09001 * 109.47194 * 60.53046 * 8 6 5 41 41 H 1.09000 * 108.52456 * 244.19050 * 12 11 9 42 42 H 1.08999 * 108.52701 * 1.71586 * 12 11 9 43 43 H 1.08995 * 108.56490 * 322.00159 * 13 12 11 44 44 H 1.08998 * 108.70374 * 203.57181 * 13 12 11 45 45 H 1.09004 * 109.74660 * 222.66657 * 16 14 13 46 46 H 1.08997 * 109.74513 * 343.33749 * 16 14 13 47 47 H 0.96995 * 120.00382 * 180.02562 * 21 20 18 48 48 H 1.08994 * 109.96626 * 258.92696 * 26 17 16 49 49 H 1.09002 * 109.96323 * 137.67712 * 26 17 16 50 50 H 1.09004 * 109.00995 * 54.28752 * 29 27 26 51 51 H 1.09005 * 109.01046 * 295.50179 * 29 27 26 52 52 H 1.09001 * 110.26841 * 9.14917 * 30 11 9 53 53 H 1.09008 * 110.26399 * 131.10106 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 6 2.0540 -0.7483 1.2410 5 6 2.9197 -1.8914 0.6574 6 6 3.2379 -1.3639 -0.7650 7 1 4.0690 -0.6592 -0.7385 8 6 3.5475 -2.5242 -1.7131 9 6 3.8653 -1.9824 -3.0829 10 8 3.8456 -0.7861 -3.2815 11 7 4.1705 -2.8273 -4.0877 12 6 4.2147 -4.2510 -3.9127 13 6 3.3039 -5.0112 -4.8440 14 6 3.9224 -5.2340 -6.2051 15 1 5.0002 -5.3682 -6.1120 16 6 3.2961 -6.4411 -6.9149 17 7 2.3640 -5.9400 -7.9295 18 6 1.6325 -6.7186 -8.7862 19 1 1.7192 -7.7943 -8.7457 20 6 0.7804 -6.1252 -9.7075 21 7 0.6751 -4.8141 -9.7573 22 14 -0.2179 -7.1873 -10.8757 23 1 0.0784 -8.6195 -10.6182 24 1 -1.6652 -6.9343 -10.6603 25 1 0.1399 -6.8524 -12.2775 26 6 2.3373 -4.4742 -7.8835 27 6 3.6075 -4.0255 -7.1364 28 1 4.4334 -3.8466 -7.8249 29 6 3.3051 -2.7744 -6.3308 30 6 4.4943 -2.3521 -5.4682 31 8 2.0187 -0.6978 -1.1578 32 1 -0.3633 -1.0277 -0.0066 33 1 -0.3633 0.5080 0.8933 34 1 -0.3634 0.5196 -0.8866 35 1 2.6621 -0.0860 1.8573 36 1 1.2248 -1.1549 1.8196 37 1 2.3541 -2.8220 0.6095 38 1 3.8333 -2.0224 1.2371 39 1 4.4039 -3.0832 -1.3358 40 1 2.6819 -3.1837 -1.7751 41 1 5.2380 -4.5885 -4.0768 42 1 3.9383 -4.4822 -2.8840 43 1 2.3792 -4.4466 -4.9627 44 1 3.0741 -5.9780 -4.3962 45 1 4.0768 -7.0333 -7.3925 46 1 2.7585 -7.0550 -6.1923 47 1 0.0794 -4.3994 -10.4007 48 1 1.4509 -4.1347 -7.3478 49 1 2.3384 -4.0700 -8.8958 50 1 2.4484 -2.9666 -5.6847 51 1 3.0568 -1.9630 -7.0150 52 1 4.6017 -1.2674 -5.4786 53 1 5.4092 -2.8249 -5.8253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946758626.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:02 Heat of formation + Delta-G solvation = -77.831043 kcal Electronic energy + Delta-G solvation = -30629.525189 eV Core-core repulsion = 26693.643975 eV Total energy + Delta-G solvation = -3935.881214 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.58350 -40.56213 -39.59347 -37.26438 -34.88550 -34.05922 -33.35804 -33.12696 -32.39537 -30.40268 -28.93216 -28.78109 -26.25080 -25.35327 -24.22490 -23.66063 -22.31629 -21.94697 -21.80234 -20.21657 -19.65278 -18.92660 -18.24329 -17.54025 -16.99031 -16.92371 -16.87483 -16.41159 -16.02571 -15.75241 -15.37387 -15.08703 -14.81985 -14.58038 -14.43083 -14.21557 -14.00424 -13.86574 -13.67814 -13.40799 -13.22191 -13.11039 -13.03882 -12.85886 -12.80899 -12.70227 -12.49351 -12.44851 -12.32741 -12.04712 -12.02825 -11.81130 -11.75064 -11.69213 -11.48557 -11.39417 -11.07019 -10.98474 -10.72626 -10.70336 -10.54248 -9.58485 -8.86135 -7.79613 -5.21283 1.44249 1.45448 1.55924 1.69511 2.05673 2.48921 2.90387 3.31829 3.57258 3.62851 3.71177 3.72811 3.84030 3.88276 4.01687 4.04549 4.05250 4.11141 4.22731 4.24378 4.28079 4.40704 4.49150 4.52856 4.58485 4.63401 4.69241 4.69427 4.74641 4.78591 4.79017 4.92024 4.95705 4.99907 5.01829 5.09306 5.09458 5.13868 5.15588 5.15972 5.23632 5.26433 5.29635 5.30970 5.47774 5.57213 5.64009 5.76544 5.85188 6.14042 6.28912 6.60991 7.12183 7.25052 7.82694 8.44134 9.24342 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016954 B = 0.002518 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.108435 B =11115.936894 C =11720.461420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 H 0.057 0.943 4 C -0.146 4.146 5 C -0.141 4.141 6 C 0.085 3.915 7 H 0.062 0.938 8 C -0.129 4.129 9 C 0.513 3.487 10 O -0.581 6.581 11 N -0.612 5.612 12 C 0.110 3.890 13 C -0.124 4.124 14 C -0.077 4.077 15 H 0.103 0.897 16 C 0.134 3.866 17 N -0.626 5.626 18 C -0.237 4.237 19 H 0.083 0.917 20 C -0.072 4.072 21 N -0.952 5.952 22 Si 0.979 3.021 23 H -0.263 1.263 24 H -0.295 1.295 25 H -0.292 1.292 26 C 0.179 3.821 27 C -0.095 4.095 28 H 0.073 0.927 29 C -0.113 4.113 30 C 0.123 3.877 31 O -0.396 6.396 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.043 0.957 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.146 0.854 40 H 0.110 0.890 41 H 0.089 0.911 42 H 0.106 0.894 43 H 0.042 0.958 44 H 0.088 0.912 45 H 0.026 0.974 46 H 0.026 0.974 47 H 0.244 0.756 48 H -0.025 1.025 49 H 0.046 0.954 50 H 0.054 0.946 51 H 0.049 0.951 52 H 0.074 0.926 53 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.802 3.808 25.401 27.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.000 4.000 3 H 0.075 0.925 4 C -0.184 4.184 5 C -0.179 4.179 6 C 0.027 3.973 7 H 0.080 0.920 8 C -0.168 4.168 9 C 0.303 3.697 10 O -0.460 6.460 11 N -0.344 5.344 12 C -0.013 4.013 13 C -0.162 4.162 14 C -0.096 4.096 15 H 0.121 0.879 16 C 0.010 3.990 17 N -0.351 5.351 18 C -0.366 4.366 19 H 0.101 0.899 20 C -0.264 4.264 21 N -0.602 5.602 22 Si 0.808 3.192 23 H -0.187 1.187 24 H -0.222 1.222 25 H -0.219 1.219 26 C 0.054 3.946 27 C -0.115 4.115 28 H 0.092 0.908 29 C -0.152 4.152 30 C 0.001 3.999 31 O -0.316 6.316 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.106 0.894 38 H 0.123 0.877 39 H 0.164 0.836 40 H 0.128 0.872 41 H 0.107 0.893 42 H 0.124 0.876 43 H 0.061 0.939 44 H 0.107 0.893 45 H 0.044 0.956 46 H 0.044 0.956 47 H 0.054 0.946 48 H -0.008 1.008 49 H 0.064 0.936 50 H 0.072 0.928 51 H 0.068 0.932 52 H 0.092 0.908 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.549 4.431 24.987 27.114 hybrid contribution -1.192 -0.066 -1.423 1.857 sum 8.356 4.364 23.565 25.381 Atomic orbital electron populations 1.21926 0.93462 1.02641 1.02503 1.22898 0.95575 0.95796 0.85718 0.92510 1.23006 1.00786 0.97637 0.96975 1.23182 1.01659 0.99138 0.93898 1.22973 0.87874 0.92773 0.93681 0.92048 1.21887 1.05800 0.98923 0.90215 1.21147 0.75296 0.85912 0.87299 1.90688 1.53511 1.17411 1.84426 1.48161 1.68225 1.07786 1.10251 1.20734 1.01062 0.78664 1.00884 1.21258 0.99130 1.01200 0.94598 1.21768 1.00610 0.93022 0.94182 0.87855 1.21391 0.91593 0.95660 0.90393 1.44562 1.48842 1.02654 1.39092 1.19524 1.16805 0.90394 1.09923 0.89885 1.25688 1.01730 0.97151 1.01839 1.70191 1.41705 1.09203 1.39073 0.84988 0.77651 0.78391 0.78197 1.18718 1.22194 1.21887 1.21112 0.92069 0.83501 0.97928 1.22239 0.97823 0.94525 0.96878 0.90813 1.21695 0.98712 0.96685 0.98109 1.22095 0.97434 1.00192 0.80200 1.89003 1.40033 1.68087 1.34507 0.92127 0.89165 0.93769 0.89458 0.89004 0.89392 0.87694 0.83613 0.87215 0.89294 0.87553 0.93912 0.89321 0.95623 0.95617 0.94633 1.00750 0.93575 0.92762 0.93233 0.90753 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.36 71.98 0.67 -1.91 16 2 C 0.06 1.12 4.05 30.96 0.13 1.25 16 3 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 4 C -0.15 -1.76 6.64 31.58 0.21 -1.55 16 5 C -0.14 -1.59 6.59 31.90 0.21 -1.38 16 6 C 0.08 1.64 2.80 31.28 0.09 1.73 16 7 H 0.06 1.32 8.03 -2.39 -0.02 1.30 16 8 C -0.13 -2.20 3.88 29.85 0.12 -2.09 16 9 C 0.51 13.65 7.67 87.66 0.67 14.32 16 10 O -0.58 -21.01 15.24 7.86 0.12 -20.89 16 11 N -0.61 -14.64 2.61 -825.57 -2.15 -16.80 16 12 C 0.11 1.95 5.68 86.23 0.49 2.44 16 13 C -0.12 -3.11 4.72 29.29 0.14 -2.97 16 14 C -0.08 -2.32 2.77 -10.30 -0.03 -2.35 16 15 H 0.10 2.42 7.70 -2.38 -0.02 2.40 16 16 C 0.13 5.30 6.83 86.49 0.59 5.90 16 17 N -0.63 -32.67 3.38 -698.48 -2.36 -35.03 16 18 C -0.24 -13.55 10.25 84.03 0.86 -12.69 16 19 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 20 C -0.07 -4.20 5.48 84.86 0.47 -3.73 16 21 N -0.95 -59.14 10.16 21.65 0.22 -58.92 16 22 Si 0.98 46.81 29.55 68.60 2.03 48.83 16 23 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 26 C 0.18 9.14 5.13 86.70 0.44 9.59 16 27 C -0.10 -3.48 2.94 -9.86 -0.03 -3.51 16 28 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 29 C -0.11 -3.82 4.50 30.17 0.14 -3.68 16 30 C 0.12 3.28 6.16 85.74 0.53 3.80 16 31 O -0.40 -10.70 10.28 -138.10 -1.42 -12.12 16 32 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 36 H 0.09 0.87 7.70 -2.39 -0.02 0.85 16 37 H 0.09 0.86 8.06 -2.38 -0.02 0.84 16 38 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.15 1.25 7.89 -2.39 -0.02 1.23 16 40 H 0.11 1.75 7.85 -2.39 -0.02 1.73 16 41 H 0.09 1.20 7.70 -2.39 -0.02 1.18 16 42 H 0.11 1.24 5.98 -2.39 -0.01 1.22 16 43 H 0.04 1.40 5.84 -2.39 -0.01 1.38 16 44 H 0.09 1.96 7.56 -2.39 -0.02 1.94 16 45 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.03 0.99 7.43 -2.39 -0.02 0.98 16 47 H 0.24 14.76 8.31 -92.71 -0.77 13.99 16 48 H -0.03 -1.47 7.72 -2.39 -0.02 -1.48 16 49 H 0.05 2.73 6.19 -2.39 -0.01 2.71 16 50 H 0.05 2.04 5.47 -2.39 -0.01 2.03 16 51 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 52 H 0.07 2.19 7.31 -2.39 -0.02 2.17 16 53 H 0.10 2.21 7.82 -2.38 -0.02 2.20 16 Total: -1.00 -80.34 393.63 3.00 -77.33 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.88 Total: 14.43 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: 5.69 Total: 3.16 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -4.29 Total: -110.74 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.30 Total: -33.02 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.83 kcal Total: -80.34 3.00 -77.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946758626.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.496 kcal (2) G-P(sol) polarization free energy of solvation -80.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds