Wall clock time and date at job start Tue Mar 31 2020 20:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.32775 * 2 1 4 4 C 1.54477 * 110.37493 * 237.75461 * 2 1 3 5 5 C 1.54507 * 104.06415 * 217.07556 * 4 2 1 6 6 C 1.54477 * 104.06150 * 359.97438 * 5 4 2 7 7 H 1.09000 * 110.37308 * 265.15008 * 6 5 4 8 8 C 1.53002 * 110.37403 * 142.91941 * 6 5 4 9 9 C 1.50698 * 109.47321 * 175.00201 * 8 6 5 10 10 O 1.21279 * 119.99997 * 359.97438 * 9 8 6 11 11 N 1.34778 * 119.99855 * 180.02562 * 9 8 6 12 12 C 1.49722 * 122.75640 * 179.97438 * 11 9 8 13 13 C 1.53165 * 105.59816 * 111.58618 * 12 11 9 14 14 C 1.50967 * 111.95532 * 99.83523 * 13 12 11 15 15 H 1.08994 * 109.52123 * 58.24729 * 14 13 12 16 16 C 1.53584 * 111.30548 * 178.50629 * 14 13 12 17 17 N 1.47177 * 105.65137 * 150.29159 * 16 14 13 18 18 C 1.36936 * 126.10039 * 149.76087 * 17 16 14 19 19 H 1.07991 * 120.00130 * 349.97924 * 18 17 16 20 20 C 1.38817 * 119.99685 * 169.97355 * 18 17 16 21 21 N 1.31615 * 120.00020 * 350.59970 * 20 18 17 22 22 Si 1.86800 * 119.99576 * 170.59455 * 20 18 17 23 23 H 1.48503 * 109.46909 * 90.00225 * 22 20 18 24 24 H 1.48497 * 109.47261 * 210.00083 * 22 20 18 25 25 H 1.48499 * 109.47369 * 330.00506 * 22 20 18 26 26 C 1.46786 * 107.79773 * 329.74154 * 17 16 14 27 27 C 1.53833 * 107.90832 * 20.29290 * 26 17 16 28 28 H 1.09004 * 111.54539 * 118.11992 * 27 26 17 29 29 C 1.51856 * 109.23044 * 241.13096 * 27 26 17 30 30 C 1.43642 * 122.75810 * 359.70733 * 11 9 8 31 31 O 1.44424 * 110.46865 * 122.31474 * 2 1 3 32 32 H 1.09005 * 109.46865 * 180.69800 * 1 2 3 33 33 H 1.08997 * 109.47211 * 300.69450 * 1 2 3 34 34 H 1.09000 * 109.47458 * 60.69965 * 1 2 3 35 35 H 1.09000 * 110.51080 * 335.72295 * 4 2 1 36 36 H 1.09004 * 110.51332 * 98.28994 * 4 2 1 37 37 H 1.09002 * 110.51404 * 118.64472 * 5 4 2 38 38 H 1.08999 * 110.51010 * 241.21890 * 5 4 2 39 39 H 1.08997 * 109.47015 * 295.00658 * 8 6 5 40 40 H 1.09006 * 109.47039 * 54.99832 * 8 6 5 41 41 H 1.08998 * 110.21988 * 230.60806 * 12 11 9 42 42 H 1.09003 * 110.21514 * 352.43591 * 12 11 9 43 43 H 1.09002 * 108.98810 * 220.47108 * 13 12 11 44 44 H 1.09003 * 108.98848 * 339.20089 * 13 12 11 45 45 H 1.08999 * 110.21393 * 269.33438 * 16 14 13 46 46 H 1.08998 * 110.21488 * 31.25118 * 16 14 13 47 47 H 0.97008 * 119.99616 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.77244 * 260.67813 * 26 17 16 49 49 H 1.08995 * 109.79694 * 139.92150 * 26 17 16 50 50 H 1.09000 * 108.91639 * 320.65212 * 29 27 26 51 51 H 1.08993 * 108.91673 * 79.20697 * 29 27 26 52 52 H 1.09003 * 108.42509 * 359.36228 * 30 11 9 53 53 H 1.09006 * 108.42564 * 116.61806 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0678 -0.7726 -1.2248 5 6 3.3195 -1.5025 -0.6883 6 6 3.3902 -1.0840 0.7970 7 1 4.0542 -0.2282 0.9189 8 6 3.8683 -2.2548 1.6582 9 6 4.0474 -1.7916 3.0810 10 8 3.8160 -0.6385 3.3771 11 7 4.4658 -2.6586 4.0243 12 6 4.6650 -2.2651 5.4551 13 6 3.5709 -2.9959 6.2393 14 6 4.0942 -4.2434 6.9094 15 1 4.9114 -3.9805 7.5810 16 6 2.9946 -4.9439 7.7212 17 7 3.3353 -6.3755 7.6985 18 6 3.0510 -7.2881 8.6790 19 1 2.6778 -6.9541 9.6358 20 6 3.2423 -8.6426 8.4430 21 7 3.5175 -9.0664 7.2277 22 14 3.1092 -9.8637 9.8504 23 1 1.7058 -10.3356 9.9652 24 1 4.0008 -11.0217 9.5870 25 1 3.5150 -9.2047 11.1177 26 6 4.0340 -6.6505 6.4372 27 6 4.5791 -5.3170 5.8979 28 1 5.6670 -5.3273 5.8303 29 6 3.9537 -5.0320 4.5438 30 6 4.7519 -4.0374 3.7407 31 8 2.0350 -0.7233 1.1435 32 1 -0.3633 -1.0276 0.0125 33 1 -0.3633 0.5246 0.8837 34 1 -0.3634 0.5029 -0.8962 35 1 1.3284 -1.4915 -1.5777 36 1 2.3388 -0.0819 -2.0233 37 1 3.1989 -2.5823 -0.7759 38 1 4.2112 -1.1742 -1.2222 39 1 3.1286 -3.0547 1.6268 40 1 4.8191 -2.6240 1.2738 41 1 5.6498 -2.5811 5.7991 42 1 4.5554 -1.1865 5.5679 43 1 3.1721 -2.3252 7.0005 44 1 2.7679 -3.2710 5.5554 45 1 2.9899 -4.5741 8.7465 46 1 2.0220 -4.7810 7.2569 47 1 3.6516 -10.0130 7.0629 48 1 3.3390 -7.0831 5.7175 49 1 4.8582 -7.3412 6.6148 50 1 3.8840 -5.9643 3.9835 51 1 2.9494 -4.6364 4.6946 52 1 4.5604 -4.2185 2.6830 53 1 5.8104 -4.2157 3.9304 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946758627.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:06 Heat of formation + Delta-G solvation = -79.198741 kcal Electronic energy + Delta-G solvation = -30475.828435 eV Core-core repulsion = 26539.887913 eV Total energy + Delta-G solvation = -3935.940522 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.56531 -40.54681 -39.58993 -37.25601 -34.92517 -33.96679 -33.31350 -33.11215 -32.54386 -30.35439 -29.06489 -28.67232 -26.27400 -25.32238 -24.14681 -23.60772 -22.42438 -22.11555 -21.70152 -20.23665 -19.68414 -18.86275 -18.24699 -17.37820 -17.13421 -16.92480 -16.72618 -16.41000 -16.15729 -15.72064 -15.41614 -15.01562 -14.81020 -14.60142 -14.51354 -14.36789 -13.93527 -13.82093 -13.77385 -13.34841 -13.24213 -13.11566 -12.97960 -12.87980 -12.78547 -12.71805 -12.49680 -12.38128 -12.27647 -12.09553 -12.04020 -11.83376 -11.74539 -11.69855 -11.46548 -11.31765 -11.17103 -10.97938 -10.73586 -10.64262 -10.61487 -9.60320 -8.87116 -7.88414 -5.22224 1.45331 1.46655 1.56069 1.67849 2.03648 2.49284 2.92399 3.29978 3.55705 3.63823 3.67764 3.74507 3.84995 3.89958 4.00499 4.05570 4.06659 4.07066 4.18819 4.26267 4.30738 4.40089 4.51235 4.52836 4.58032 4.62775 4.64852 4.69438 4.74076 4.79312 4.81856 4.89894 4.91859 4.98634 5.01079 5.02774 5.07244 5.09572 5.18067 5.18418 5.24741 5.26728 5.28257 5.33145 5.45757 5.53670 5.59118 5.78242 5.80748 6.06258 6.22061 6.58827 7.10431 7.22430 7.77972 8.45961 9.23753 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020887 B = 0.002317 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.211692 B =12079.286719 C =12368.759370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 H 0.063 0.937 4 C -0.146 4.146 5 C -0.145 4.145 6 C 0.086 3.914 7 H 0.061 0.939 8 C -0.132 4.132 9 C 0.517 3.483 10 O -0.578 6.578 11 N -0.610 5.610 12 C 0.119 3.881 13 C -0.115 4.115 14 C -0.082 4.082 15 H 0.072 0.928 16 C 0.133 3.867 17 N -0.624 5.624 18 C -0.246 4.246 19 H 0.076 0.924 20 C -0.063 4.063 21 N -0.946 5.946 22 Si 0.976 3.024 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.271 1.271 26 C 0.188 3.812 27 C -0.091 4.091 28 H 0.087 0.913 29 C -0.121 4.121 30 C 0.111 3.889 31 O -0.393 6.393 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.110 0.890 40 H 0.141 0.859 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.041 0.959 46 H 0.006 0.994 47 H 0.248 0.752 48 H -0.001 1.001 49 H 0.020 0.980 50 H 0.074 0.926 51 H 0.054 0.946 52 H 0.102 0.898 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.068 16.607 -19.273 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.001 4.001 3 H 0.081 0.919 4 C -0.184 4.184 5 C -0.183 4.183 6 C 0.028 3.972 7 H 0.079 0.921 8 C -0.171 4.171 9 C 0.308 3.692 10 O -0.458 6.458 11 N -0.343 5.343 12 C -0.003 4.003 13 C -0.153 4.153 14 C -0.101 4.101 15 H 0.090 0.910 16 C 0.007 3.993 17 N -0.348 5.348 18 C -0.375 4.375 19 H 0.094 0.906 20 C -0.256 4.256 21 N -0.594 5.594 22 Si 0.804 3.196 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.196 1.196 26 C 0.062 3.938 27 C -0.110 4.110 28 H 0.106 0.894 29 C -0.159 4.159 30 C -0.012 4.012 31 O -0.313 6.313 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.159 0.841 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.059 0.941 46 H 0.024 0.976 47 H 0.057 0.943 48 H 0.017 0.983 49 H 0.039 0.961 50 H 0.093 0.907 51 H 0.073 0.927 52 H 0.120 0.880 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.824 16.958 -18.909 25.556 hybrid contribution -0.400 -1.078 1.087 1.582 sum 2.424 15.881 -17.822 23.994 Atomic orbital electron populations 1.21804 0.92825 1.02703 1.02802 1.23157 0.95847 0.95568 0.85518 0.91920 1.22996 0.97715 1.00007 0.97653 1.23007 0.99463 1.02385 0.93449 1.22780 0.84519 0.95893 0.94043 0.92146 1.21906 1.05601 0.99471 0.90125 1.21034 0.75127 0.84832 0.88238 1.90679 1.51900 1.20213 1.82997 1.48194 1.66200 1.10432 1.09472 1.22220 0.99086 0.99772 0.79198 1.21571 0.98689 0.95594 0.99476 1.21660 0.97755 0.94070 0.96627 0.90967 1.21461 0.95601 0.84469 0.97720 1.44696 1.66019 1.04649 1.19485 1.19394 1.38049 0.87291 0.92795 0.90586 1.25650 1.02500 0.98461 0.99027 1.70161 1.55415 1.13775 1.20030 0.85121 0.77207 0.78381 0.78850 1.21314 1.21698 1.19564 1.20893 0.93672 0.93055 0.86155 1.22113 0.99866 0.94276 0.94777 0.89448 1.21375 0.99787 0.99334 0.95395 1.20593 1.00177 0.79542 1.00931 1.89228 1.27469 1.74889 1.39695 0.92256 0.93252 0.89003 0.89997 0.88895 0.89255 0.88488 0.87230 0.84117 0.88768 0.90107 0.91139 0.92134 0.94052 0.97591 0.94265 0.98331 0.96149 0.90738 0.92716 0.87997 0.90173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.52 71.98 0.69 -1.59 16 2 C 0.06 1.02 3.92 31.10 0.12 1.14 16 3 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.15 -1.73 6.63 31.61 0.21 -1.53 16 5 C -0.15 -1.68 6.63 31.61 0.21 -1.47 16 6 C 0.09 1.63 2.74 31.10 0.09 1.72 16 7 H 0.06 1.30 7.90 -2.39 -0.02 1.28 16 8 C -0.13 -2.28 3.74 29.85 0.11 -2.17 16 9 C 0.52 13.23 7.69 87.66 0.67 13.90 16 10 O -0.58 -19.68 15.31 3.18 0.05 -19.63 16 11 N -0.61 -14.22 2.67 -824.43 -2.20 -16.43 16 12 C 0.12 2.88 6.26 85.81 0.54 3.42 16 13 C -0.11 -3.20 4.57 29.99 0.14 -3.07 16 14 C -0.08 -2.67 2.61 -10.48 -0.03 -2.70 16 15 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 16 C 0.13 5.62 6.71 86.45 0.58 6.20 16 17 N -0.62 -32.63 3.37 -696.82 -2.35 -34.98 16 18 C -0.25 -14.10 10.26 84.03 0.86 -13.23 16 19 H 0.08 4.20 7.85 -2.92 -0.02 4.18 16 20 C -0.06 -3.61 5.41 84.86 0.46 -3.15 16 21 N -0.95 -56.87 10.70 21.65 0.23 -56.64 16 22 Si 0.98 46.03 29.56 68.60 2.03 48.06 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 26 C 0.19 9.03 4.99 86.61 0.43 9.46 16 27 C -0.09 -3.08 3.14 -10.11 -0.03 -3.11 16 28 H 0.09 2.65 7.76 -2.38 -0.02 2.63 16 29 C -0.12 -3.34 4.51 29.47 0.13 -3.21 16 30 C 0.11 2.21 5.61 86.16 0.48 2.69 16 31 O -0.39 -10.01 10.62 -142.77 -1.52 -11.53 16 32 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 0.89 7.87 -2.39 -0.02 0.87 16 36 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.09 0.86 7.87 -2.39 -0.02 0.84 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.11 1.80 7.85 -2.39 -0.02 1.78 16 40 H 0.14 1.40 7.90 -2.38 -0.02 1.38 16 41 H 0.09 1.98 7.84 -2.39 -0.02 1.96 16 42 H 0.08 2.10 7.31 -2.39 -0.02 2.08 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.06 1.89 5.58 -2.39 -0.01 1.88 16 45 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 46 H 0.01 0.27 7.96 -2.39 -0.02 0.26 16 47 H 0.25 14.44 8.31 -92.70 -0.77 13.67 16 48 H 0.00 -0.07 7.14 -2.39 -0.02 -0.09 16 49 H 0.02 1.10 7.13 -2.39 -0.02 1.08 16 50 H 0.07 2.10 7.66 -2.39 -0.02 2.08 16 51 H 0.05 1.72 5.78 -2.39 -0.01 1.70 16 52 H 0.10 1.46 6.01 -2.39 -0.01 1.44 16 53 H 0.08 1.40 7.70 -2.38 -0.02 1.38 16 Total: -1.00 -76.04 395.21 2.77 -73.26 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.87 Total: 14.58 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 5.66 Total: 3.31 kcal Atomic # 7 Polarization: -103.72 SS G_CDS: -4.32 Total: -108.05 kcal Atomic # 8 Polarization: -29.70 SS G_CDS: -1.47 Total: -31.17 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -76.04 2.77 -73.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946758627.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.936 kcal (2) G-P(sol) polarization free energy of solvation -76.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds