Wall clock time and date at job start Tue Mar 31 2020 20:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.27113 * 2 1 4 4 C 1.54944 * 110.39417 * 237.85205 * 2 1 3 5 5 C 1.55452 * 100.99008 * 204.64883 * 4 2 1 6 6 C 1.54384 * 102.18535 * 34.03835 * 5 4 2 7 7 H 1.09000 * 109.83300 * 98.30145 * 6 5 4 8 8 C 1.53002 * 109.83272 * 219.18581 * 6 5 4 9 9 C 1.50697 * 109.47122 * 184.81445 * 8 6 5 10 10 O 1.21271 * 120.00440 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99653 * 179.97438 * 9 8 6 12 12 C 1.49726 * 122.75758 * 179.97438 * 11 9 8 13 13 C 1.53167 * 105.70709 * 111.55199 * 12 11 9 14 14 C 1.51069 * 111.89576 * 99.68090 * 13 12 11 15 15 H 1.09000 * 108.72913 * 57.97207 * 14 13 12 16 16 C 1.53599 * 111.28060 * 178.66262 * 14 13 12 17 17 N 1.47172 * 105.64844 * 150.42825 * 16 14 13 18 18 C 1.36941 * 126.10031 * 149.70593 * 17 16 14 19 19 H 1.07997 * 119.99909 * 350.02633 * 18 17 16 20 20 C 1.38808 * 119.99984 * 170.02641 * 18 17 16 21 21 N 1.31616 * 120.00261 * 350.58683 * 20 18 17 22 22 Si 1.86799 * 120.00055 * 170.58077 * 20 18 17 23 23 H 1.48509 * 109.46920 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47219 * 119.99870 * 22 20 18 25 25 H 1.48493 * 109.47497 * 240.00436 * 22 20 18 26 26 C 1.46781 * 107.80126 * 329.74246 * 17 16 14 27 27 C 1.53834 * 107.91259 * 20.28131 * 26 17 16 28 28 H 1.08996 * 111.00879 * 118.49871 * 27 26 17 29 29 C 1.51853 * 109.22891 * 241.15730 * 27 26 17 30 30 C 1.43639 * 122.76051 * 0.02562 * 11 9 8 31 31 O 1.43244 * 107.66577 * 338.74186 * 6 5 4 32 32 H 1.09004 * 109.47573 * 299.36712 * 1 2 3 33 33 H 1.08999 * 109.46912 * 59.36383 * 1 2 3 34 34 H 1.09003 * 109.47366 * 179.36395 * 1 2 3 35 35 H 1.09005 * 111.12617 * 322.51521 * 4 2 1 36 36 H 1.08993 * 111.12612 * 86.63586 * 4 2 1 37 37 H 1.09000 * 110.83456 * 275.89461 * 5 4 2 38 38 H 1.08994 * 110.92791 * 152.22448 * 5 4 2 39 39 H 1.08998 * 109.47131 * 64.81263 * 8 6 5 40 40 H 1.09003 * 109.46944 * 304.81539 * 8 6 5 41 41 H 1.08992 * 110.22137 * 230.64094 * 12 11 9 42 42 H 1.09003 * 110.21061 * 352.46772 * 12 11 9 43 43 H 1.09006 * 108.98099 * 220.55449 * 13 12 11 44 44 H 1.08997 * 108.98655 * 339.28092 * 13 12 11 45 45 H 1.08997 * 110.21085 * 31.38491 * 16 14 13 46 46 H 1.08993 * 110.21359 * 269.47196 * 16 14 13 47 47 H 0.97000 * 120.00293 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.77617 * 260.67114 * 26 17 16 49 49 H 1.09002 * 109.77650 * 139.89801 * 26 17 16 50 50 H 1.09001 * 108.91734 * 79.20110 * 29 27 26 51 51 H 1.09004 * 108.91262 * 320.66175 * 29 27 26 52 52 H 1.09008 * 108.42337 * 359.30967 * 30 11 9 53 53 H 1.08995 * 108.42523 * 116.56830 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0699 -0.7728 -1.2296 5 6 3.4732 -1.2023 -0.7170 6 6 3.2125 -1.4394 0.7861 7 1 3.0656 -2.5032 0.9727 8 6 4.3989 -0.9279 1.6058 9 6 4.1900 -1.2690 3.0587 10 8 3.1905 -1.8623 3.4047 11 7 5.1141 -0.9148 3.9736 12 6 4.9693 -1.2215 5.4320 13 6 6.0488 -2.2617 5.7460 14 6 7.2647 -1.6357 6.3879 15 1 6.9553 -1.1256 7.3001 16 6 8.3239 -2.6952 6.7268 17 7 9.6198 -2.0031 6.6394 18 6 10.7424 -2.2975 7.3662 19 1 10.6844 -2.9906 8.1924 20 6 11.9548 -1.7051 7.0412 21 7 12.0703 -1.0090 5.9301 22 14 13.4227 -1.8954 8.1807 23 1 13.0348 -2.7188 9.3542 24 1 14.5313 -2.5634 7.4527 25 1 13.8690 -0.5560 8.6411 26 6 9.4941 -0.9405 5.6347 27 6 7.9974 -0.6330 5.4559 28 1 7.7757 0.3997 5.7254 29 6 7.5965 -0.9173 4.0191 30 6 6.3181 -0.2110 3.6300 31 8 2.0285 -0.7157 1.1414 32 1 -0.3634 0.5040 0.8956 33 1 -0.3633 0.5237 -0.8842 34 1 -0.3634 -1.0276 -0.0114 35 1 1.4506 -1.6422 -1.4502 36 1 2.1509 -0.1205 -2.0990 37 1 4.2005 -0.4037 -0.8632 38 1 3.8011 -2.1209 -1.2034 39 1 4.4784 0.1534 1.4942 40 1 5.3158 -1.3982 1.2503 41 1 5.1305 -0.3208 6.0242 42 1 3.9801 -1.6323 5.6340 43 1 5.6335 -3.0113 6.4198 44 1 6.3519 -2.7491 4.8194 45 1 8.2837 -3.5119 6.0061 46 1 8.1671 -3.0749 7.7364 47 1 12.9177 -0.5953 5.7027 48 1 9.9172 -1.2761 4.6879 49 1 10.0161 -0.0465 5.9760 50 1 7.4583 -1.9915 3.8968 51 1 8.3976 -0.5883 3.3571 52 1 6.3275 -0.0503 2.5519 53 1 6.2995 0.7628 4.1192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946758628.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:12 Heat of formation + Delta-G solvation = -79.425490 kcal Electronic energy + Delta-G solvation = -30390.877048 eV Core-core repulsion = 26454.926693 eV Total energy + Delta-G solvation = -3935.950355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.56250 -40.57603 -39.56500 -37.23936 -34.91683 -33.93469 -33.29370 -33.12840 -32.54018 -30.31419 -29.05203 -28.65201 -26.28528 -25.37779 -24.14654 -23.58901 -22.36027 -22.12553 -21.72271 -20.11539 -19.67732 -18.85102 -18.15036 -17.95486 -16.99937 -16.86826 -16.70348 -16.36039 -16.20353 -15.52547 -15.27716 -14.99111 -14.83534 -14.58065 -14.49448 -14.13835 -14.09737 -13.83121 -13.74708 -13.48423 -13.26178 -13.12274 -12.95724 -12.90780 -12.77114 -12.66593 -12.52624 -12.38762 -12.24372 -12.09952 -11.99955 -11.81665 -11.74711 -11.69622 -11.61933 -11.32268 -11.17572 -10.97926 -10.71873 -10.62539 -10.40952 -9.59523 -8.86866 -7.88526 -5.22211 1.45356 1.45882 1.56586 1.71309 2.04066 2.49026 2.90280 3.29890 3.55476 3.61410 3.70347 3.76196 3.84599 3.89593 3.90657 3.99951 4.06950 4.17602 4.21194 4.26305 4.31262 4.43645 4.49419 4.52782 4.62416 4.64567 4.65320 4.69263 4.73744 4.81887 4.83385 4.90112 4.90809 4.94596 5.01097 5.03237 5.09419 5.10504 5.14796 5.18505 5.26951 5.29333 5.33027 5.35766 5.46272 5.54094 5.59541 5.78190 5.80781 6.22203 6.28334 6.60401 7.10556 7.25259 7.78134 8.45912 9.23796 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.029969 B = 0.002186 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.066314 B =12807.649198 C =13341.895414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 H 0.074 0.926 4 C -0.146 4.146 5 C -0.145 4.145 6 C 0.092 3.908 7 H 0.062 0.938 8 C -0.147 4.147 9 C 0.518 3.482 10 O -0.577 6.577 11 N -0.612 5.612 12 C 0.118 3.882 13 C -0.114 4.114 14 C -0.082 4.082 15 H 0.069 0.931 16 C 0.135 3.865 17 N -0.624 5.624 18 C -0.244 4.244 19 H 0.077 0.923 20 C -0.064 4.064 21 N -0.946 5.946 22 Si 0.976 3.024 23 H -0.268 1.268 24 H -0.292 1.292 25 H -0.290 1.290 26 C 0.187 3.813 27 C -0.092 4.092 28 H 0.083 0.917 29 C -0.119 4.119 30 C 0.112 3.888 31 O -0.393 6.393 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.010 0.990 46 H 0.041 0.959 47 H 0.248 0.752 48 H 0.001 0.999 49 H 0.018 0.982 50 H 0.059 0.941 51 H 0.075 0.925 52 H 0.102 0.898 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.929 4.545 -15.572 25.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.002 3.998 3 H 0.092 0.908 4 C -0.183 4.183 5 C -0.183 4.183 6 C 0.034 3.966 7 H 0.080 0.920 8 C -0.186 4.186 9 C 0.308 3.692 10 O -0.456 6.456 11 N -0.344 5.344 12 C -0.004 4.004 13 C -0.152 4.152 14 C -0.101 4.101 15 H 0.088 0.912 16 C 0.009 3.991 17 N -0.349 5.349 18 C -0.373 4.373 19 H 0.095 0.905 20 C -0.258 4.258 21 N -0.594 5.594 22 Si 0.804 3.196 23 H -0.192 1.192 24 H -0.219 1.219 25 H -0.217 1.217 26 C 0.062 3.938 27 C -0.112 4.112 28 H 0.102 0.898 29 C -0.157 4.157 30 C -0.012 4.012 31 O -0.313 6.313 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.072 0.928 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.107 0.893 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.028 0.972 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.019 0.981 49 H 0.037 0.963 50 H 0.078 0.922 51 H 0.093 0.907 52 H 0.120 0.880 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.356 4.265 -15.201 25.761 hybrid contribution 1.477 -0.298 0.787 1.700 sum -18.879 3.967 -14.415 24.082 Atomic orbital electron populations 1.21879 0.93590 1.02406 1.02736 1.23218 0.95343 0.95942 0.85329 0.90782 1.23332 0.95753 1.00967 0.98244 1.23225 0.98465 1.04111 0.92452 1.22493 0.84206 0.95567 0.94352 0.91968 1.22232 1.01131 1.05097 0.90165 1.21047 0.81616 0.77698 0.88824 1.90682 1.29928 1.42891 1.82102 1.48202 1.20461 1.57895 1.07888 1.22201 0.98837 0.98963 0.80373 1.21595 0.94138 0.98348 1.01155 1.21673 0.93906 0.95963 0.98601 0.91246 1.21438 0.85571 0.94167 0.97901 1.44700 1.08435 1.35869 1.45876 1.19436 0.86588 1.23031 1.08235 0.90522 1.25648 1.00048 1.01189 0.98869 1.70161 1.24925 1.39853 1.24469 0.85051 0.79052 0.77123 0.78342 1.19198 1.21906 1.21684 1.20910 0.91865 0.90475 0.90566 1.22107 0.94665 0.98862 0.95522 0.89843 1.21444 0.97217 1.01361 0.95674 1.20663 0.82898 0.94965 1.02636 1.88603 1.42576 1.64943 1.35185 0.93119 0.89133 0.92813 0.90542 0.87769 0.88449 0.88627 0.86638 0.85532 0.89281 0.90231 0.90943 0.91730 0.97197 0.94073 0.94286 0.98135 0.96305 0.92202 0.90681 0.87995 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.62 71.98 0.69 -1.41 16 2 C 0.06 0.92 4.07 31.26 0.13 1.05 16 3 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 4 C -0.15 -1.54 6.58 32.10 0.21 -1.33 16 5 C -0.15 -1.58 6.56 31.91 0.21 -1.38 16 6 C 0.09 1.75 3.04 31.06 0.09 1.84 16 7 H 0.06 1.44 7.94 -2.39 -0.02 1.42 16 8 C -0.15 -2.53 3.68 29.85 0.11 -2.42 16 9 C 0.52 13.40 7.66 87.66 0.67 14.08 16 10 O -0.58 -19.94 15.18 8.72 0.13 -19.81 16 11 N -0.61 -14.46 2.67 -823.62 -2.20 -16.66 16 12 C 0.12 2.91 6.25 85.81 0.54 3.45 16 13 C -0.11 -3.09 4.59 30.02 0.14 -2.95 16 14 C -0.08 -2.65 2.60 -10.44 -0.03 -2.68 16 15 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 16 C 0.13 5.59 6.71 86.45 0.58 6.17 16 17 N -0.62 -32.30 3.37 -696.80 -2.35 -34.65 16 18 C -0.24 -13.85 10.26 84.03 0.86 -12.99 16 19 H 0.08 4.21 7.85 -2.91 -0.02 4.19 16 20 C -0.06 -3.66 5.41 84.86 0.46 -3.20 16 21 N -0.95 -56.62 10.70 21.65 0.23 -56.39 16 22 Si 0.98 45.89 29.56 68.60 2.03 47.92 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 26 C 0.19 8.94 4.99 86.61 0.43 9.37 16 27 C -0.09 -3.10 3.13 -10.11 -0.03 -3.14 16 28 H 0.08 2.58 7.78 -2.39 -0.02 2.56 16 29 C -0.12 -3.20 4.52 29.61 0.13 -3.07 16 30 C 0.11 2.26 5.63 86.30 0.49 2.75 16 31 O -0.39 -9.41 10.05 -137.25 -1.38 -10.79 16 32 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.85 8.06 -2.38 -0.02 0.83 16 36 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.10 0.74 7.85 -2.39 -0.02 0.72 16 38 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.12 1.57 7.89 -2.39 -0.02 1.55 16 40 H 0.13 1.59 7.86 -2.39 -0.02 1.57 16 41 H 0.09 1.98 7.84 -2.39 -0.02 1.96 16 42 H 0.08 2.12 7.31 -2.39 -0.02 2.10 16 43 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 44 H 0.06 1.90 5.59 -2.39 -0.01 1.88 16 45 H 0.01 0.43 7.96 -2.39 -0.02 0.41 16 46 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 48 H 0.00 0.04 7.14 -2.38 -0.02 0.02 16 49 H 0.02 1.01 7.13 -2.39 -0.02 1.00 16 50 H 0.06 1.78 5.79 -2.39 -0.01 1.76 16 51 H 0.07 2.06 7.66 -2.38 -0.02 2.04 16 52 H 0.10 1.48 6.01 -2.38 -0.01 1.46 16 53 H 0.07 1.38 7.71 -2.39 -0.02 1.36 16 Total: -1.00 -75.36 395.13 3.02 -72.34 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.87 Total: 13.92 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 5.68 Total: 4.12 kcal Atomic # 7 Polarization: -103.38 SS G_CDS: -4.32 Total: -107.70 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -1.25 Total: -30.59 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -75.36 3.02 -72.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946758628.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.082 kcal (2) G-P(sol) polarization free energy of solvation -75.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds