Wall clock time and date at job start Tue Mar 31 2020 21:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.48122 * 2 1 4 4 C 1.53093 * 109.47465 * 239.97849 * 2 1 3 5 5 C 1.53183 * 109.15909 * 182.39701 * 4 2 1 6 6 H 1.09003 * 109.54303 * 297.02153 * 5 4 2 7 7 C 1.50698 * 109.53947 * 176.84842 * 5 4 2 8 8 O 1.21281 * 119.99945 * 274.58822 * 7 5 4 9 9 N 1.34780 * 120.00290 * 94.59661 * 7 5 4 10 10 C 1.43401 * 122.61076 * 354.57273 * 9 7 5 11 11 C 1.51717 * 114.32662 * 122.82306 * 10 9 7 12 12 C 1.51156 * 111.82550 * 82.73009 * 11 10 9 13 13 H 1.09007 * 110.23389 * 33.72838 * 12 11 10 14 14 C 1.53403 * 110.93783 * 156.15235 * 12 11 10 15 15 N 1.46604 * 108.10600 * 102.74840 * 14 12 11 16 16 C 1.36940 * 125.31237 * 178.65026 * 15 14 12 17 17 H 1.07997 * 120.00196 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99580 * 180.02562 * 16 15 14 19 19 N 1.31616 * 120.00241 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99767 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46904 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47224 * 119.99784 * 20 18 16 23 23 H 1.48501 * 109.46963 * 239.99877 * 20 18 16 24 24 C 1.46657 * 109.36772 * 358.64919 * 15 14 12 25 25 C 1.55655 * 107.04187 * 18.37831 * 24 15 14 26 26 H 1.08990 * 110.81879 * 90.76075 * 25 24 15 27 27 C 1.51857 * 109.93608 * 214.24338 * 25 24 15 28 28 C 1.49547 * 122.55418 * 174.55462 * 9 7 5 29 29 C 1.53176 * 109.11160 * 56.93711 * 5 4 2 30 30 C 1.53107 * 109.15230 * 303.14894 * 29 5 4 31 31 O 1.42901 * 109.48689 * 57.48135 * 30 29 5 32 32 H 1.08997 * 109.47066 * 180.02562 * 1 2 3 33 33 H 1.09005 * 109.46752 * 300.02213 * 1 2 3 34 34 H 1.08993 * 109.47175 * 60.02012 * 1 2 3 35 35 H 1.08992 * 109.52504 * 62.49241 * 4 2 1 36 36 H 1.09004 * 109.57488 * 302.33118 * 4 2 1 37 37 H 1.08998 * 108.40103 * 1.63496 * 10 9 7 38 38 H 1.09001 * 108.58005 * 244.14679 * 10 9 7 39 39 H 1.09000 * 108.99645 * 322.15683 * 11 10 9 40 40 H 1.09000 * 108.99698 * 203.31219 * 11 10 9 41 41 H 1.08994 * 109.74762 * 222.41856 * 14 12 11 42 42 H 1.08997 * 109.74281 * 343.07848 * 14 12 11 43 43 H 0.96995 * 120.00305 * 179.97438 * 19 18 16 44 44 H 1.09003 * 109.96492 * 137.64567 * 24 15 14 45 45 H 1.08999 * 109.96735 * 258.90480 * 24 15 14 46 46 H 1.09000 * 109.00321 * 294.91672 * 27 25 24 47 47 H 1.08997 * 109.00830 * 53.70462 * 27 25 24 48 48 H 1.08991 * 110.26926 * 131.26283 * 28 9 7 49 49 H 1.08999 * 110.26391 * 9.16695 * 28 9 7 50 50 H 1.08990 * 109.52093 * 62.96735 * 29 5 4 51 51 H 1.08999 * 109.52036 * 183.15860 * 29 5 4 52 52 H 1.08996 * 109.41183 * 297.49337 * 30 29 5 53 53 H 1.09005 * 109.47907 * 177.50061 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0404 -0.7221 -1.2497 5 6 3.5711 -0.7705 -1.2125 6 1 3.9688 0.2439 -1.2428 7 6 4.0798 -1.5471 -2.3995 8 8 4.1639 -2.7556 -2.3427 9 7 4.4415 -0.8986 -3.5244 10 6 4.2597 0.5136 -3.6947 11 6 5.5346 1.2748 -4.0058 12 6 5.8816 1.2130 -5.4757 13 1 4.9726 1.1950 -6.0772 14 6 6.7635 2.4009 -5.8813 15 7 8.1448 1.9239 -5.9979 16 6 9.2181 2.6896 -6.3679 17 1 9.0807 3.7351 -6.6013 18 6 10.4827 2.1220 -6.4431 19 7 10.6502 0.8480 -6.1582 20 14 11.9469 3.1667 -6.9471 21 1 11.4956 4.5565 -7.2119 22 1 12.9513 3.1718 -5.8534 23 1 12.5576 2.6023 -8.1774 24 6 8.1977 0.4986 -5.6564 25 6 6.7453 -0.0507 -5.7651 26 1 6.5481 -0.4285 -6.7682 27 6 6.5181 -1.1249 -4.7160 28 6 5.0639 -1.5970 -4.6911 29 6 4.0198 -1.4585 0.0804 30 6 3.4311 -0.7090 1.2787 31 8 2.0069 -0.6742 1.1663 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5142 0.8898 34 1 -0.3633 0.5135 -0.8901 35 1 1.7146 -0.1842 -2.1399 36 1 1.6444 -1.7374 -1.2722 37 1 3.8296 0.9181 -2.7785 38 1 3.5516 0.6771 -4.5071 39 1 6.3540 0.8452 -3.4296 40 1 5.4052 2.3174 -3.7153 41 1 6.4288 2.7977 -6.8396 42 1 6.7056 3.1791 -5.1203 43 1 11.5337 0.4513 -6.2111 44 1 8.8457 -0.0282 -6.3570 45 1 8.5686 0.3731 -4.6392 46 1 7.1639 -1.9756 -4.9335 47 1 6.7784 -0.7248 -3.7361 48 1 4.5589 -1.3132 -5.6143 49 1 5.0200 -2.6772 -4.5518 50 1 3.6649 -2.4890 0.0867 51 1 5.1081 -1.4467 0.1405 52 1 3.8194 0.3093 1.2954 53 1 3.7105 -1.2201 2.2001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946836888.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:13 Heat of formation + Delta-G solvation = -80.408884 kcal Electronic energy + Delta-G solvation = -31022.471736 eV Core-core repulsion = 27086.478738 eV Total energy + Delta-G solvation = -3935.992998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.83880 -40.49883 -39.44605 -37.32217 -35.07616 -34.63519 -33.67650 -33.41393 -32.39670 -29.49636 -28.86857 -28.56275 -26.45743 -25.59728 -24.35534 -24.01050 -23.08149 -21.94717 -21.49848 -20.11494 -19.65690 -18.91897 -18.37493 -17.32199 -17.23113 -16.94039 -16.69046 -16.39622 -16.06626 -15.80164 -15.46404 -15.21074 -15.03650 -14.69082 -14.56389 -14.29732 -14.21330 -13.83214 -13.67215 -13.46525 -13.38014 -13.14641 -13.05236 -12.84794 -12.82884 -12.72458 -12.60352 -12.37986 -12.32325 -12.10031 -11.97302 -11.82909 -11.77816 -11.72978 -11.50622 -11.35897 -11.05676 -10.96753 -10.87720 -10.72291 -10.33217 -9.66390 -8.86063 -7.80087 -5.21391 1.44645 1.45315 1.53203 1.55809 1.95083 2.48624 2.86135 3.31545 3.43199 3.64407 3.68144 3.70183 3.72385 3.82742 3.92973 3.96020 4.05958 4.11991 4.21697 4.24773 4.28132 4.40235 4.45052 4.48185 4.51945 4.66088 4.68321 4.69127 4.71580 4.73769 4.76504 4.84895 4.93172 4.97982 5.00899 5.05714 5.06936 5.10158 5.12216 5.13976 5.24009 5.26283 5.28342 5.35840 5.46729 5.52363 5.62810 5.75531 5.84955 6.29000 6.31909 6.51557 7.11653 7.12448 7.82706 8.43729 9.23747 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.002543 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.812455 B =11007.278216 C =11137.151184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.078 0.922 4 C -0.131 4.131 5 C -0.106 4.106 6 H 0.115 0.885 7 C 0.523 3.477 8 O -0.585 6.585 9 N -0.605 5.605 10 C 0.106 3.894 11 C -0.122 4.122 12 C -0.079 4.079 13 H 0.101 0.899 14 C 0.134 3.866 15 N -0.625 5.625 16 C -0.237 4.237 17 H 0.082 0.918 18 C -0.070 4.070 19 N -0.951 5.951 20 Si 0.978 3.022 21 H -0.264 1.264 22 H -0.294 1.294 23 H -0.292 1.292 24 C 0.179 3.821 25 C -0.096 4.096 26 H 0.073 0.927 27 C -0.113 4.113 28 C 0.121 3.879 29 C -0.140 4.140 30 C 0.066 3.934 31 O -0.399 6.399 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.089 0.911 41 H 0.024 0.976 42 H 0.027 0.973 43 H 0.244 0.756 44 H 0.045 0.955 45 H -0.023 1.023 46 H 0.054 0.946 47 H 0.059 0.941 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.061 0.939 51 H 0.073 0.927 52 H 0.069 0.931 53 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.992 0.167 10.756 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.096 0.904 4 C -0.169 4.169 5 C -0.127 4.127 6 H 0.133 0.867 7 C 0.313 3.687 8 O -0.465 6.465 9 N -0.337 5.337 10 C -0.017 4.017 11 C -0.160 4.160 12 C -0.098 4.098 13 H 0.119 0.881 14 C 0.010 3.990 15 N -0.351 5.351 16 C -0.366 4.366 17 H 0.100 0.900 18 C -0.263 4.263 19 N -0.601 5.601 20 Si 0.806 3.194 21 H -0.188 1.188 22 H -0.221 1.221 23 H -0.219 1.219 24 C 0.054 3.946 25 C -0.115 4.115 26 H 0.091 0.909 27 C -0.151 4.151 28 C -0.001 4.001 29 C -0.178 4.178 30 C -0.010 4.010 31 O -0.319 6.319 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.107 0.893 39 H 0.066 0.934 40 H 0.107 0.893 41 H 0.042 0.958 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.064 0.936 45 H -0.005 1.005 46 H 0.072 0.928 47 H 0.077 0.923 48 H 0.119 0.881 49 H 0.096 0.904 50 H 0.079 0.921 51 H 0.092 0.908 52 H 0.087 0.913 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.899 -0.534 10.910 24.472 hybrid contribution 2.064 0.168 -0.648 2.170 sum -19.835 -0.366 10.262 22.335 Atomic orbital electron populations 1.21792 0.91879 1.02809 1.03636 1.22263 0.96038 0.95367 0.83610 0.90381 1.22163 0.91741 1.02397 1.00577 1.21457 0.98250 1.00875 0.92156 0.86700 1.20956 0.76378 0.87590 0.83749 1.90661 1.56557 1.16231 1.83061 1.48109 1.60718 1.09587 1.15248 1.20933 0.97098 0.79191 1.04482 1.21438 0.97833 1.01381 0.95397 1.21783 0.97788 0.93070 0.97142 0.88085 1.21403 0.84173 0.95843 0.97627 1.44521 1.03665 1.07282 1.79634 1.19509 0.86618 0.93102 1.37380 0.89974 1.25658 1.00300 0.97549 1.02758 1.70172 1.21349 1.12091 1.56480 0.85009 0.79139 0.78323 0.76887 1.18819 1.22142 1.21948 1.21415 0.93019 0.84365 0.95835 1.22504 0.95666 0.94963 0.98417 0.90888 1.21670 0.96705 0.97782 0.98951 1.22166 0.91653 0.97551 0.88736 1.22063 1.01395 1.00369 0.93958 1.22628 0.80288 1.00372 0.97717 1.87926 1.21691 1.78492 1.43772 0.92726 0.91435 0.89038 0.88340 0.92199 0.87947 0.89293 0.93395 0.89277 0.95840 0.95535 0.94595 0.93637 1.00458 0.92762 0.92294 0.88136 0.90412 0.92060 0.90845 0.91306 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.57 71.98 0.69 -0.85 16 2 C 0.08 1.13 3.26 30.63 0.10 1.23 16 3 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.13 -1.95 4.69 30.69 0.14 -1.81 16 5 C -0.11 -1.92 1.89 -11.42 -0.02 -1.94 16 6 H 0.12 1.60 6.17 -2.39 -0.01 1.58 16 7 C 0.52 13.16 6.76 87.66 0.59 13.75 16 8 O -0.58 -19.75 15.88 -3.03 -0.05 -19.80 16 9 N -0.61 -13.58 2.61 -824.06 -2.15 -15.74 16 10 C 0.11 1.80 5.60 86.53 0.48 2.28 16 11 C -0.12 -2.88 4.78 29.57 0.14 -2.74 16 12 C -0.08 -2.28 2.74 -10.30 -0.03 -2.30 16 13 H 0.10 2.28 7.67 -2.38 -0.02 2.26 16 14 C 0.13 5.14 6.82 86.49 0.59 5.73 16 15 N -0.63 -31.77 3.38 -695.29 -2.35 -34.12 16 16 C -0.24 -13.26 10.25 84.03 0.86 -12.40 16 17 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 18 C -0.07 -4.03 5.48 84.86 0.47 -3.56 16 19 N -0.95 -57.79 10.16 21.65 0.22 -57.57 16 20 Si 0.98 45.97 29.55 68.60 2.03 48.00 16 21 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 23 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 24 C 0.18 8.80 5.19 87.27 0.45 9.26 16 25 C -0.10 -3.33 3.00 -9.29 -0.03 -3.36 16 26 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 27 C -0.11 -3.48 4.55 30.19 0.14 -3.35 16 28 C 0.12 2.99 6.18 85.76 0.53 3.52 16 29 C -0.14 -2.72 5.13 30.69 0.16 -2.56 16 30 C 0.07 1.02 6.84 72.02 0.49 1.51 16 31 O -0.40 -7.26 10.41 -148.98 -1.55 -8.81 16 32 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.20 5.45 -2.39 -0.01 1.19 16 38 H 0.09 1.17 7.67 -2.39 -0.02 1.15 16 39 H 0.05 1.44 5.87 -2.39 -0.01 1.42 16 40 H 0.09 1.85 7.51 -2.39 -0.02 1.83 16 41 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.03 0.99 7.39 -2.39 -0.02 0.97 16 43 H 0.24 14.47 8.31 -92.71 -0.77 13.70 16 44 H 0.05 2.61 6.19 -2.39 -0.01 2.60 16 45 H -0.02 -1.24 7.78 -2.39 -0.02 -1.26 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.06 2.01 5.50 -2.39 -0.01 1.99 16 48 H 0.10 2.06 7.81 -2.39 -0.02 2.04 16 49 H 0.08 2.12 7.30 -2.39 -0.02 2.10 16 50 H 0.06 1.48 7.76 -2.39 -0.02 1.47 16 51 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 52 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 Total: -1.00 -74.42 389.96 2.79 -71.64 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.88 Total: 13.98 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.76 Total: 2.41 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -4.28 Total: -107.42 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -1.60 Total: -28.60 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 48.00 kcal Total: -74.42 2.79 -71.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946836888.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.772 kcal (2) G-P(sol) polarization free energy of solvation -74.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds