Wall clock time and date at job start Tue Mar 31 2020 21:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47714 * 2 1 4 4 C 1.53283 * 109.46785 * 240.01812 * 2 1 3 5 5 C 1.53175 * 109.06556 * 182.43708 * 4 2 1 6 6 H 1.09002 * 109.54525 * 176.84842 * 5 4 2 7 7 C 1.50697 * 109.54535 * 297.02992 * 5 4 2 8 8 O 1.21277 * 120.00173 * 9.47183 * 7 5 4 9 9 N 1.34776 * 119.99862 * 189.47123 * 7 5 4 10 10 C 1.49727 * 122.75590 * 185.38150 * 9 7 5 11 11 C 1.53173 * 105.71401 * 111.67596 * 10 9 7 12 12 C 1.50965 * 111.95152 * 99.77142 * 11 10 9 13 13 H 1.08996 * 109.52047 * 57.27592 * 12 11 10 14 14 C 1.53583 * 111.30730 * 178.51133 * 12 11 10 15 15 N 1.46035 * 106.22243 * 151.02167 * 14 12 11 16 16 C 1.36933 * 126.62919 * 149.16162 * 15 14 12 17 17 H 1.08003 * 119.99938 * 350.25529 * 16 15 14 18 18 C 1.38812 * 119.99930 * 170.25544 * 16 15 14 19 19 N 1.31613 * 120.00329 * 350.19076 * 18 16 15 20 20 Si 1.86807 * 119.99997 * 170.19098 * 18 16 15 21 21 H 1.48505 * 109.46796 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47351 * 119.99859 * 20 18 16 23 23 H 1.48497 * 109.46776 * 240.00118 * 20 18 16 24 24 C 1.46787 * 107.26808 * 328.48405 * 15 14 12 25 25 C 1.53835 * 107.90467 * 20.96054 * 24 15 14 26 26 H 1.09006 * 111.00183 * 117.83346 * 25 24 15 27 27 C 1.51854 * 109.22995 * 241.13554 * 25 24 15 28 28 C 1.45264 * 122.06908 * 3.14220 * 9 7 5 29 29 C 1.53180 * 109.10762 * 56.94071 * 5 4 2 30 30 C 1.53092 * 109.16266 * 302.97445 * 29 5 4 31 31 O 1.42895 * 109.48293 * 120.02476 * 2 1 3 32 32 H 1.09002 * 109.47013 * 299.97138 * 1 2 3 33 33 H 1.09000 * 109.47792 * 59.97205 * 1 2 3 34 34 H 1.09005 * 109.47240 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.64182 * 62.52320 * 4 2 1 36 36 H 1.09002 * 109.50058 * 302.27861 * 4 2 1 37 37 H 1.09000 * 110.21039 * 352.59225 * 10 9 7 38 38 H 1.09002 * 110.21513 * 230.76553 * 10 9 7 39 39 H 1.08996 * 108.98437 * 220.40142 * 11 10 9 40 40 H 1.08998 * 108.98273 * 339.22135 * 11 10 9 41 41 H 1.08993 * 110.21637 * 269.34061 * 14 12 11 42 42 H 1.09005 * 110.21025 * 31.25175 * 14 12 11 43 43 H 0.97005 * 120.00444 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.77193 * 261.35042 * 24 15 14 45 45 H 1.08993 * 109.77687 * 140.57255 * 24 15 14 46 46 H 1.09003 * 108.92089 * 320.66001 * 27 25 24 47 47 H 1.08997 * 108.92140 * 79.31132 * 27 25 24 48 48 H 1.08999 * 106.97043 * 116.92636 * 28 9 7 49 49 H 1.09009 * 109.15065 * 0.07441 * 28 9 7 50 50 H 1.09004 * 109.52202 * 62.87984 * 29 5 4 51 51 H 1.08999 * 109.52691 * 183.06756 * 29 5 4 52 52 H 1.09001 * 109.47941 * 177.58822 * 30 29 5 53 53 H 1.08997 * 109.48527 * 297.62406 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0408 -0.7222 -1.2518 5 6 3.5713 -0.7704 -1.2121 6 1 3.9409 -1.3313 -2.0706 7 6 4.1210 0.6322 -1.2517 8 8 3.3738 1.5800 -1.1331 9 7 5.4432 0.8333 -1.4188 10 6 6.0712 2.1907 -1.3505 11 6 6.9278 2.1881 -0.0807 12 6 8.3871 1.9492 -0.3849 13 1 8.7432 2.7089 -1.0806 14 6 9.2370 1.9860 0.8938 15 7 10.3782 1.1078 0.6506 16 6 11.6373 1.2410 1.1721 17 1 11.9084 2.1398 1.7061 18 6 12.5653 0.2207 1.0145 19 7 12.1860 -0.9462 0.5384 20 14 14.3526 0.5039 1.4783 21 1 14.5188 1.8899 1.9848 22 1 14.7485 -0.4608 2.5355 23 1 15.2111 0.3080 0.2827 24 6 9.9227 0.0401 -0.2478 25 6 8.6608 0.5384 -0.9729 26 1 8.8230 0.5884 -2.0497 27 6 7.4941 -0.3706 -0.6284 28 6 6.3695 -0.2652 -1.6321 29 6 4.0179 -1.4595 0.0810 30 6 3.4308 -0.7089 1.2791 31 8 2.0065 -0.6741 1.1664 32 1 -0.3633 0.5134 0.8903 33 1 -0.3635 0.5142 -0.8897 34 1 -0.3634 -1.0277 -0.0005 35 1 1.7163 -0.1848 -2.1429 36 1 1.6447 -1.7375 -1.2732 37 1 5.3009 2.9591 -1.2835 38 1 6.6969 2.3608 -2.2266 39 1 6.8230 3.1506 0.4198 40 1 6.5723 1.4017 0.5852 41 1 9.5944 2.9988 1.0794 42 1 8.6546 1.6298 1.7435 43 1 12.8344 -1.6593 0.4286 44 1 9.6872 -0.8531 0.3308 45 1 10.7014 -0.1864 -0.9760 46 1 7.8461 -1.4018 -0.5991 47 1 7.1136 -0.0994 0.3563 48 1 6.8033 -0.1277 -2.6226 49 1 5.8166 -1.2047 -1.6300 50 1 3.6618 -2.4897 0.0864 51 1 5.1061 -1.4490 0.1423 52 1 3.7100 -1.2199 2.2005 53 1 3.8190 0.3095 1.2960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946836889.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:18 Heat of formation + Delta-G solvation = -75.674334 kcal Electronic energy + Delta-G solvation = -31627.832654 eV Core-core repulsion = 27692.044962 eV Total energy + Delta-G solvation = -3935.787692 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.01985 -40.58497 -39.11548 -37.28320 -35.18186 -34.56083 -33.64439 -33.31859 -32.51183 -29.17962 -29.05640 -28.66532 -26.41988 -25.48491 -24.15118 -24.01298 -23.19089 -22.16720 -21.87421 -19.99114 -19.60772 -18.83795 -18.00923 -17.31433 -17.18098 -16.91309 -16.63714 -16.55917 -16.26278 -15.66993 -15.46557 -15.04832 -15.01637 -14.78133 -14.49419 -14.42357 -13.96382 -13.77772 -13.62161 -13.38800 -13.32119 -13.17219 -13.13539 -12.95060 -12.88768 -12.79635 -12.76015 -12.35203 -12.24855 -12.12904 -11.97641 -11.83793 -11.74982 -11.69444 -11.49522 -11.27248 -11.15467 -10.99533 -10.70610 -10.65598 -10.12540 -9.63150 -8.87589 -7.89205 -5.22687 1.45285 1.45880 1.56346 1.57188 1.97640 2.48672 2.87079 3.29320 3.44189 3.63482 3.68411 3.73315 3.79124 3.90627 3.96289 3.98333 3.99266 4.12391 4.15134 4.27697 4.31204 4.45948 4.51974 4.55942 4.64072 4.65843 4.67155 4.70927 4.73389 4.79630 4.82393 4.83656 4.89557 4.94512 4.98171 5.01702 5.06591 5.07733 5.08932 5.17940 5.25237 5.26840 5.32490 5.33764 5.46069 5.54068 5.57338 5.77878 5.80940 6.22393 6.32982 6.50941 7.10020 7.15730 7.78724 8.46211 9.22881 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024771 B = 0.002697 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.069842 B =10379.982798 C =10643.659849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.064 3.936 3 H 0.065 0.935 4 C -0.122 4.122 5 C -0.110 4.110 6 H 0.125 0.875 7 C 0.521 3.479 8 O -0.573 6.573 9 N -0.607 5.607 10 C 0.120 3.880 11 C -0.116 4.116 12 C -0.082 4.082 13 H 0.070 0.930 14 C 0.136 3.864 15 N -0.621 5.621 16 C -0.244 4.244 17 H 0.077 0.923 18 C -0.061 4.061 19 N -0.944 5.944 20 Si 0.975 3.025 21 H -0.268 1.268 22 H -0.292 1.292 23 H -0.290 1.290 24 C 0.184 3.816 25 C -0.092 4.092 26 H 0.083 0.917 27 C -0.118 4.118 28 C 0.107 3.893 29 C -0.145 4.145 30 C 0.057 3.943 31 O -0.397 6.397 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.037 0.963 42 H 0.008 0.992 43 H 0.248 0.752 44 H 0.000 1.000 45 H 0.020 0.980 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.103 0.897 50 H 0.102 0.898 51 H 0.088 0.912 52 H 0.104 0.896 53 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.719 -0.946 -6.875 21.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.007 3.993 3 H 0.083 0.917 4 C -0.160 4.160 5 C -0.131 4.131 6 H 0.143 0.857 7 C 0.311 3.689 8 O -0.453 6.453 9 N -0.339 5.339 10 C -0.001 4.001 11 C -0.154 4.154 12 C -0.101 4.101 13 H 0.089 0.911 14 C 0.010 3.990 15 N -0.346 5.346 16 C -0.373 4.373 17 H 0.094 0.906 18 C -0.255 4.255 19 N -0.592 5.592 20 Si 0.803 3.197 21 H -0.193 1.193 22 H -0.219 1.219 23 H -0.217 1.217 24 C 0.059 3.941 25 C -0.111 4.111 26 H 0.101 0.899 27 C -0.156 4.156 28 C -0.016 4.016 29 C -0.182 4.182 30 C -0.019 4.019 31 O -0.317 6.317 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.111 0.889 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.026 0.974 43 H 0.057 0.943 44 H 0.018 0.982 45 H 0.039 0.961 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.094 0.906 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.107 0.893 52 H 0.122 0.878 53 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -21.058 -0.624 -6.673 22.099 hybrid contribution 1.835 0.163 0.464 1.899 sum -19.223 -0.461 -6.209 20.207 Atomic orbital electron populations 1.21739 0.92271 1.02991 1.02616 1.22571 0.95789 0.96323 0.84652 0.91694 1.22022 0.92786 1.02435 0.98791 1.21490 0.97481 0.92570 1.01558 0.85686 1.20971 0.81202 0.91980 0.74710 1.90592 1.57687 1.45342 1.51718 1.48628 1.06041 1.08730 1.70487 1.22225 0.95879 0.83976 0.98061 1.21589 0.93146 1.02497 0.98156 1.21678 0.94568 0.97196 0.96705 0.91131 1.21227 0.88433 0.93620 0.95722 1.44430 1.06922 1.29319 1.53909 1.19404 0.87550 1.00603 1.29788 0.90567 1.25614 1.02467 0.95207 1.02194 1.70157 1.33636 1.03035 1.52401 0.85074 0.80001 0.77629 0.77001 1.19255 1.21904 1.21672 1.20948 0.92517 0.89549 0.91115 1.22109 0.94739 0.94759 0.99509 0.89860 1.21410 0.94329 1.00098 0.99753 1.21060 0.91067 0.90358 0.99114 1.22266 1.02253 1.01054 0.92656 1.22584 0.80990 0.98860 0.99514 1.87864 1.21221 1.78258 1.44310 0.92635 0.90079 0.91366 0.90353 0.88907 0.89765 0.89119 0.90945 0.91596 0.94496 0.97441 0.94274 0.98198 0.96149 0.90529 0.91941 0.90637 0.87857 0.87986 0.89340 0.87757 0.95405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.56 71.98 0.69 -1.72 16 2 C 0.06 1.39 2.98 30.69 0.09 1.48 16 3 H 0.07 1.79 5.48 -2.38 -0.01 1.78 16 4 C -0.12 -2.09 4.62 30.75 0.14 -1.95 16 5 C -0.11 -1.84 2.17 -11.42 -0.02 -1.87 16 6 H 0.13 1.46 7.22 -2.39 -0.02 1.44 16 7 C 0.52 11.78 5.80 87.66 0.51 12.29 16 8 O -0.57 -16.63 13.28 -3.02 -0.04 -16.67 16 9 N -0.61 -12.70 2.75 -819.68 -2.25 -14.95 16 10 C 0.12 2.63 6.33 85.81 0.54 3.17 16 11 C -0.12 -2.90 4.58 29.99 0.14 -2.76 16 12 C -0.08 -2.53 2.65 -10.48 -0.03 -2.55 16 13 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 14 C 0.14 5.50 6.61 86.66 0.57 6.07 16 15 N -0.62 -31.52 3.35 -699.69 -2.34 -33.87 16 16 C -0.24 -13.70 10.28 84.03 0.86 -12.83 16 17 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 18 C -0.06 -3.45 5.41 84.86 0.46 -2.99 16 19 N -0.94 -55.76 10.68 21.65 0.23 -55.53 16 20 Si 0.97 45.38 29.57 68.60 2.03 47.41 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 C 0.18 8.58 4.98 86.61 0.43 9.01 16 25 C -0.09 -2.95 3.12 -10.11 -0.03 -2.98 16 26 H 0.08 2.46 7.80 -2.38 -0.02 2.44 16 27 C -0.12 -2.97 4.14 29.60 0.12 -2.85 16 28 C 0.11 1.97 4.75 86.00 0.41 2.38 16 29 C -0.14 -2.37 5.28 30.68 0.16 -2.21 16 30 C 0.06 1.22 6.62 72.01 0.48 1.70 16 31 O -0.40 -9.56 10.41 -148.98 -1.55 -11.11 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 35 H 0.08 1.32 8.13 -2.39 -0.02 1.30 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.96 7.30 -2.39 -0.02 1.94 16 38 H 0.09 1.79 7.85 -2.39 -0.02 1.77 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.07 1.79 5.52 -2.39 -0.01 1.78 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.46 16 42 H 0.01 0.32 7.96 -2.38 -0.02 0.30 16 43 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 44 H 0.00 0.00 7.17 -2.39 -0.02 -0.02 16 45 H 0.02 1.08 7.07 -2.39 -0.02 1.06 16 46 H 0.08 1.99 7.66 -2.39 -0.02 1.97 16 47 H 0.06 1.72 5.76 -2.39 -0.01 1.71 16 48 H 0.08 1.29 7.72 -2.39 -0.02 1.27 16 49 H 0.10 1.42 4.87 -2.38 -0.01 1.41 16 50 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 51 H 0.09 1.42 5.86 -2.39 -0.01 1.41 16 52 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 53 H 0.03 0.70 7.38 -2.39 -0.02 0.68 16 Total: -1.00 -69.75 381.41 2.49 -67.26 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.89 Total: 16.08 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 5.52 Total: 1.39 kcal Atomic # 7 Polarization: -99.99 SS G_CDS: -4.36 Total: -104.35 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -1.59 Total: -27.79 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.75 2.49 -67.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946836889.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.410 kcal (2) G-P(sol) polarization free energy of solvation -69.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds