Wall clock time and date at job start Tue Mar 31 2020 21:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.48330 * 2 1 4 4 C 1.53275 * 109.46859 * 119.99171 * 2 1 3 5 5 C 1.53179 * 109.06361 * 177.55672 * 4 2 1 6 6 H 1.09003 * 109.54319 * 183.14730 * 5 4 2 7 7 C 1.50703 * 109.54440 * 62.97137 * 5 4 2 8 8 O 1.21283 * 119.99841 * 349.18841 * 7 5 4 9 9 N 1.34776 * 119.99807 * 169.19037 * 7 5 4 10 10 C 1.49724 * 122.75996 * 5.06422 * 9 7 5 11 11 C 1.53165 * 105.58853 * 111.58242 * 10 9 7 12 12 C 1.50955 * 111.96511 * 99.84293 * 11 10 9 13 13 H 1.09002 * 108.82676 * 57.74674 * 12 11 10 14 14 C 1.53595 * 111.30480 * 178.51734 * 12 11 10 15 15 N 1.47171 * 105.64884 * 150.29260 * 14 12 11 16 16 C 1.36947 * 126.09760 * 149.70998 * 15 14 12 17 17 H 1.07997 * 120.00026 * 347.86169 * 16 15 14 18 18 C 1.38810 * 120.00026 * 167.86618 * 16 15 14 19 19 N 1.31621 * 119.99819 * 2.39916 * 18 16 15 20 20 Si 1.86791 * 120.00095 * 182.39674 * 18 16 15 21 21 H 1.48500 * 109.47154 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47550 * 120.00034 * 20 18 16 23 23 H 1.48507 * 109.47212 * 240.00225 * 20 18 16 24 24 C 1.46772 * 107.80201 * 329.73769 * 15 14 12 25 25 C 1.53831 * 107.91139 * 20.29334 * 24 15 14 26 26 H 1.09004 * 111.01293 * 118.48906 * 25 24 15 27 27 C 1.51856 * 109.22675 * 241.14409 * 25 24 15 28 28 C 1.43723 * 122.81285 * 185.10837 * 9 7 5 29 29 C 1.53169 * 109.11051 * 303.05680 * 5 4 2 30 30 C 1.53096 * 109.16242 * 57.02629 * 29 5 4 31 31 O 1.42900 * 109.47881 * 239.98370 * 2 1 3 32 32 H 1.08997 * 109.47339 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.46839 * 300.02100 * 1 2 3 34 34 H 1.09010 * 109.47178 * 60.01730 * 1 2 3 35 35 H 1.09000 * 109.50631 * 57.72127 * 4 2 1 36 36 H 1.09000 * 109.63831 * 297.47446 * 4 2 1 37 37 H 1.09005 * 110.21353 * 352.57126 * 10 9 7 38 38 H 1.08999 * 110.33146 * 230.66189 * 10 9 7 39 39 H 1.09001 * 108.98341 * 339.20657 * 11 10 9 40 40 H 1.08996 * 108.91975 * 220.44182 * 11 10 9 41 41 H 1.09000 * 110.21025 * 31.24763 * 14 12 11 42 42 H 1.08999 * 110.27982 * 269.37195 * 14 12 11 43 43 H 0.97001 * 119.99601 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.77891 * 260.67666 * 24 15 14 45 45 H 1.09004 * 109.79784 * 139.91645 * 24 15 14 46 46 H 1.09002 * 108.92136 * 320.65187 * 27 25 24 47 47 H 1.09006 * 108.91525 * 79.28858 * 27 25 24 48 48 H 1.09008 * 108.52933 * 116.66549 * 28 9 7 49 49 H 1.08999 * 108.38520 * 359.37603 * 28 9 7 50 50 H 1.09002 * 109.52777 * 176.92846 * 29 5 4 51 51 H 1.08999 * 109.52170 * 297.06037 * 29 5 4 52 52 H 1.08994 * 109.48277 * 62.37429 * 30 29 5 53 53 H 1.09000 * 109.48045 * 182.40900 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0409 -0.7224 1.2516 5 6 3.5714 -0.7706 1.2118 6 1 3.9410 -1.3316 2.0702 7 6 4.1212 0.6319 1.2515 8 8 3.3773 1.5792 1.1088 9 7 5.4396 0.8336 1.4456 10 6 6.4287 -0.2880 1.5185 11 6 7.2890 -0.1607 0.2577 12 6 8.6101 0.5124 0.5412 13 1 9.1388 -0.0580 1.3049 14 6 9.4753 0.5992 -0.7250 15 7 10.2996 1.8073 -0.5604 16 6 11.5564 2.0018 -1.0685 17 1 12.1079 1.1688 -1.4787 18 6 12.1214 3.2696 -1.0561 19 7 11.4688 4.2757 -0.5136 20 14 13.8079 3.5479 -1.8095 21 1 14.3263 2.2656 -2.3500 22 1 13.7015 4.5409 -2.9086 23 1 14.7366 4.0586 -0.7692 24 6 9.5348 2.7660 0.2458 25 6 8.4524 1.9843 1.0098 26 1 8.5892 2.0786 2.0871 27 6 7.0824 2.4875 0.5905 28 6 6.0127 2.1425 1.6006 29 6 4.0179 -1.4596 -0.0813 30 6 3.4307 -0.7088 -1.2794 31 8 2.0065 -0.6739 -1.1665 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5141 0.8897 34 1 -0.3634 0.5136 -0.8902 35 1 1.6448 -1.7377 1.2730 36 1 1.7164 -0.1851 2.1428 37 1 5.9107 -1.2471 1.5257 38 1 7.0489 -0.1888 2.4093 39 1 6.7456 0.4236 -0.4849 40 1 7.4774 -1.1564 -0.1437 41 1 8.8426 0.6923 -1.6077 42 1 10.1112 -0.2820 -0.8092 43 1 11.8636 5.1617 -0.5053 44 1 9.0665 3.5044 -0.4050 45 1 10.1975 3.2653 0.9528 46 1 7.1236 3.5707 0.4755 47 1 6.8200 2.0406 -0.3685 48 1 6.4451 2.2153 2.5986 49 1 5.2135 2.8794 1.5213 50 1 5.1061 -1.4491 -0.1427 51 1 3.6626 -2.4901 -0.0864 52 1 3.8190 0.3095 -1.2961 53 1 3.7099 -1.2197 -2.2009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000946836890.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:22 Heat of formation + Delta-G solvation = -75.981976 kcal Electronic energy + Delta-G solvation = -31580.963101 eV Core-core repulsion = 27645.162068 eV Total energy + Delta-G solvation = -3935.801033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.05187 -40.56238 -39.12917 -37.26327 -35.09433 -34.69551 -33.70765 -33.22028 -32.47690 -29.35395 -28.91246 -28.62650 -26.40640 -25.58368 -24.10984 -24.00484 -23.17174 -22.16074 -21.84007 -19.97295 -19.66571 -18.88060 -18.00598 -17.30964 -17.14201 -16.91413 -16.78220 -16.46756 -16.20650 -15.64238 -15.47524 -15.14487 -14.97036 -14.81894 -14.41838 -14.35875 -14.05825 -13.79104 -13.55264 -13.34056 -13.30392 -13.18620 -13.15777 -12.95602 -12.87247 -12.81468 -12.67636 -12.37455 -12.23191 -12.06825 -11.97195 -11.83865 -11.76684 -11.68184 -11.50166 -11.25326 -11.16853 -10.98625 -10.69610 -10.68929 -10.12806 -9.63159 -8.86003 -7.87584 -5.24500 1.44190 1.45420 1.55698 1.58245 2.00323 2.48135 2.88568 3.30487 3.38940 3.65385 3.70479 3.74709 3.80410 3.90578 3.96850 3.99789 4.01062 4.12438 4.21932 4.25357 4.32544 4.47153 4.52752 4.57247 4.64189 4.67373 4.69187 4.71997 4.75367 4.79249 4.83351 4.85769 4.91421 4.96243 4.99978 5.01185 5.04853 5.08555 5.17279 5.20104 5.26205 5.28887 5.30634 5.34298 5.48164 5.58437 5.60991 5.76438 5.80609 6.23510 6.34214 6.47983 7.09770 7.18322 7.78326 8.45793 9.23182 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.025594 B = 0.002633 C = 0.002591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.760753 B =10629.989641 C =10802.064809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.062 3.938 3 H 0.061 0.939 4 C -0.123 4.123 5 C -0.105 4.105 6 H 0.132 0.868 7 C 0.518 3.482 8 O -0.579 6.579 9 N -0.604 5.604 10 C 0.107 3.893 11 C -0.124 4.124 12 C -0.080 4.080 13 H 0.079 0.921 14 C 0.134 3.866 15 N -0.625 5.625 16 C -0.240 4.240 17 H 0.082 0.918 18 C -0.067 4.067 19 N -0.950 5.950 20 Si 0.977 3.023 21 H -0.263 1.263 22 H -0.295 1.295 23 H -0.291 1.291 24 C 0.185 3.815 25 C -0.091 4.091 26 H 0.082 0.918 27 C -0.111 4.111 28 C 0.119 3.881 29 C -0.144 4.144 30 C 0.054 3.946 31 O -0.397 6.397 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.059 0.941 40 H 0.096 0.904 41 H 0.010 0.990 42 H 0.048 0.952 43 H 0.246 0.754 44 H -0.015 1.015 45 H 0.026 0.974 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.062 0.938 50 H 0.098 0.902 51 H 0.107 0.893 52 H 0.021 0.979 53 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.500 -16.437 6.903 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.005 3.995 3 H 0.079 0.921 4 C -0.161 4.161 5 C -0.126 4.126 6 H 0.150 0.850 7 C 0.309 3.691 8 O -0.460 6.460 9 N -0.336 5.336 10 C -0.013 4.013 11 C -0.162 4.162 12 C -0.100 4.100 13 H 0.097 0.903 14 C 0.008 3.992 15 N -0.350 5.350 16 C -0.369 4.369 17 H 0.100 0.900 18 C -0.260 4.260 19 N -0.598 5.598 20 Si 0.805 3.195 21 H -0.187 1.187 22 H -0.222 1.222 23 H -0.218 1.218 24 C 0.059 3.941 25 C -0.111 4.111 26 H 0.100 0.900 27 C -0.150 4.150 28 C -0.006 4.006 29 C -0.182 4.182 30 C -0.022 4.022 31 O -0.317 6.317 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.027 0.973 42 H 0.067 0.933 43 H 0.055 0.945 44 H 0.003 0.997 45 H 0.045 0.955 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.116 0.884 51 H 0.126 0.874 52 H 0.039 0.961 53 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -18.885 -15.872 6.654 25.551 hybrid contribution 1.523 1.550 -0.571 2.246 sum -17.363 -14.323 6.083 23.315 Atomic orbital electron populations 1.21738 0.92393 1.03056 1.02451 1.22565 0.95731 0.96286 0.84901 0.92137 1.22024 0.93086 1.02512 0.98464 1.21476 0.97200 0.91894 1.02064 0.85020 1.21150 0.80973 0.92347 0.74635 1.90608 1.57992 1.45845 1.51530 1.48179 1.06656 1.08168 1.70613 1.22749 0.89943 0.89960 0.98675 1.21719 0.94304 1.01807 0.98410 1.21683 0.96252 0.94836 0.97224 0.90280 1.21496 0.92480 0.89348 0.95838 1.44683 1.14643 1.15315 1.60312 1.19483 0.91214 0.93672 1.32563 0.90004 1.25738 1.02850 0.95455 1.01973 1.70188 1.39280 1.00117 1.50264 0.85028 0.79149 0.77892 0.77389 1.18731 1.22198 1.21821 1.20923 0.90871 0.90374 0.91903 1.22094 0.93882 0.95672 0.99449 0.89981 1.21358 0.93971 1.00294 0.99379 1.20304 0.95834 0.85543 0.98881 1.22322 1.02750 1.01050 0.92035 1.22629 0.80921 0.98714 0.99971 1.87857 1.21436 1.78149 1.44266 0.91096 0.90277 0.92856 0.88478 0.90677 0.86041 0.88753 0.92237 0.88520 0.97251 0.93342 0.94492 0.99658 0.95550 0.92947 0.92329 0.90781 0.91905 0.88415 0.87432 0.96089 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 9.57 71.98 0.69 -1.76 16 2 C 0.06 1.36 2.98 30.69 0.09 1.46 16 3 H 0.06 1.75 5.44 -2.39 -0.01 1.74 16 4 C -0.12 -1.99 4.63 30.75 0.14 -1.85 16 5 C -0.11 -1.57 2.19 -11.42 -0.03 -1.59 16 6 H 0.13 1.13 7.47 -2.39 -0.02 1.11 16 7 C 0.52 11.82 5.81 87.66 0.51 12.33 16 8 O -0.58 -18.00 13.09 -3.04 -0.04 -18.04 16 9 N -0.60 -12.76 2.67 -823.46 -2.20 -14.96 16 10 C 0.11 1.58 5.41 85.81 0.46 2.04 16 11 C -0.12 -2.47 3.68 29.98 0.11 -2.36 16 12 C -0.08 -2.32 2.61 -10.48 -0.03 -2.34 16 13 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 14 C 0.13 5.17 6.71 86.45 0.58 5.75 16 15 N -0.62 -31.91 3.37 -696.82 -2.35 -34.26 16 16 C -0.24 -13.47 10.27 84.03 0.86 -12.61 16 17 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 18 C -0.07 -3.85 5.48 84.86 0.47 -3.39 16 19 N -0.95 -57.97 10.49 21.65 0.23 -57.74 16 20 Si 0.98 45.99 29.55 68.60 2.03 48.01 16 21 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 24 C 0.18 9.08 5.02 86.61 0.44 9.52 16 25 C -0.09 -3.13 3.13 -10.11 -0.03 -3.17 16 26 H 0.08 2.60 7.77 -2.38 -0.02 2.58 16 27 C -0.11 -3.50 4.53 29.60 0.13 -3.37 16 28 C 0.12 3.07 5.70 86.28 0.49 3.56 16 29 C -0.14 -1.89 5.28 30.68 0.16 -1.72 16 30 C 0.05 1.08 6.62 72.01 0.48 1.56 16 31 O -0.40 -9.34 10.41 -148.98 -1.55 -10.89 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.05 0.99 8.14 -2.38 -0.02 0.98 16 35 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.12 0.96 5.15 -2.38 -0.01 0.94 16 38 H 0.09 1.27 7.85 -2.39 -0.02 1.25 16 39 H 0.06 1.46 5.58 -2.39 -0.01 1.44 16 40 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.01 0.38 7.96 -2.39 -0.02 0.36 16 42 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 44 H -0.01 -0.81 7.23 -2.39 -0.02 -0.83 16 45 H 0.03 1.48 6.87 -2.39 -0.02 1.46 16 46 H 0.05 1.84 7.66 -2.39 -0.02 1.83 16 47 H 0.06 1.96 5.78 -2.38 -0.01 1.94 16 48 H 0.07 1.72 7.70 -2.38 -0.02 1.70 16 49 H 0.06 1.85 7.02 -2.39 -0.02 1.84 16 50 H 0.10 1.06 5.14 -2.39 -0.01 1.05 16 51 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.02 0.53 7.38 -2.39 -0.02 0.51 16 53 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -74.73 380.06 2.54 -72.20 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.89 Total: 13.63 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 5.53 Total: 2.05 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -4.32 Total: -106.96 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -1.59 Total: -28.93 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -74.73 2.54 -72.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000946836890.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.785 kcal (2) G-P(sol) polarization free energy of solvation -74.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds