Wall clock time and date at job start Tue Mar 31 2020 20:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09009 * 109.57961 * 2 1 4 4 C 1.53187 * 109.71498 * 120.35574 * 2 1 3 5 5 C 1.53044 * 109.31228 * 65.20763 * 4 2 1 6 6 H 1.08995 * 109.45713 * 301.37122 * 5 4 2 7 7 N 1.46500 * 109.45938 * 181.39717 * 5 4 2 8 8 C 1.34777 * 119.99930 * 154.97287 * 7 5 4 9 9 O 1.21280 * 119.99853 * 5.24454 * 8 7 5 10 10 C 1.50700 * 119.99996 * 185.24166 * 8 7 5 11 11 C 1.53004 * 109.54154 * 68.47712 * 10 8 7 12 12 C 1.52997 * 117.49905 * 128.44432 * 11 10 8 13 13 C 1.53001 * 117.50144 * 59.81812 * 11 10 8 14 14 C 1.53204 * 109.53645 * 188.73149 * 10 8 7 15 15 C 1.53094 * 109.14684 * 62.90344 * 14 10 8 16 16 O 1.42894 * 109.42872 * 57.60075 * 15 14 10 17 17 C 1.42904 * 114.09629 * 298.83320 * 16 15 14 18 18 C 1.53096 * 109.41422 * 61.15903 * 17 16 15 19 19 C 1.53035 * 109.52586 * 61.38411 * 5 4 2 20 20 C 1.53195 * 109.31475 * 298.62804 * 19 5 4 21 21 N 1.46923 * 109.59022 * 239.71766 * 2 1 3 22 22 C 1.36936 * 120.63466 * 113.69675 * 21 2 1 23 23 H 1.07994 * 119.99467 * 38.07279 * 22 21 2 24 24 C 1.38807 * 120.00094 * 218.07596 * 22 21 2 25 25 N 1.31622 * 119.99876 * 8.35414 * 24 22 21 26 26 Si 1.86803 * 120.00087 * 188.35085 * 24 22 21 27 27 H 1.48507 * 109.46806 * 90.00186 * 26 24 22 28 28 H 1.48496 * 109.47466 * 209.99973 * 26 24 22 29 29 H 1.48498 * 109.47129 * 330.00250 * 26 24 22 30 30 H 1.08999 * 109.46879 * 180.28380 * 1 2 3 31 31 H 1.08995 * 109.47708 * 300.28379 * 1 2 3 32 32 H 1.08998 * 109.47245 * 60.29115 * 1 2 3 33 33 H 1.09002 * 109.49128 * 305.26341 * 4 2 1 34 34 H 1.09007 * 109.51078 * 185.16598 * 4 2 1 35 35 H 0.96996 * 120.00098 * 334.97147 * 7 5 4 36 36 H 1.09006 * 115.54768 * 274.15185 * 11 10 8 37 37 H 1.08993 * 117.50276 * 359.97438 * 12 11 10 38 38 H 1.09001 * 117.49485 * 145.02087 * 12 11 10 39 39 H 1.09000 * 117.49625 * 214.98539 * 13 11 10 40 40 H 1.08998 * 117.49374 * 359.97438 * 13 11 10 41 41 H 1.08990 * 109.54507 * 302.98832 * 14 10 8 42 42 H 1.09007 * 109.51651 * 182.79381 * 14 10 8 43 43 H 1.08994 * 109.47827 * 297.60198 * 15 14 10 44 44 H 1.09007 * 109.47542 * 177.59117 * 15 14 10 45 45 H 1.09007 * 109.48395 * 181.14083 * 17 16 15 46 46 H 1.08999 * 109.48218 * 301.16812 * 17 16 15 47 47 H 1.08999 * 109.52235 * 62.29771 * 18 17 16 48 48 H 1.09003 * 109.52023 * 182.48578 * 18 17 16 49 49 H 1.09001 * 109.50247 * 58.58110 * 19 5 4 50 50 H 1.08997 * 109.49976 * 178.64790 * 19 5 4 51 51 H 1.08999 * 109.58937 * 174.42298 * 20 19 5 52 52 H 1.08999 * 109.58650 * 294.84917 * 20 19 5 53 53 H 0.97006 * 119.99669 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0271 0.0000 4 6 2.0468 -0.7288 1.2444 5 6 1.6474 -2.2043 1.1692 6 1 0.5625 -2.2836 1.0995 7 7 2.1111 -2.8974 2.3736 8 6 1.4861 -4.0166 2.7898 9 8 0.6021 -4.5033 2.1171 10 6 1.8858 -4.6633 4.0910 11 6 1.4805 -3.7598 5.2573 12 6 0.6661 -4.3897 6.3891 13 6 -0.0048 -3.4252 5.4089 14 6 1.1870 -6.0201 4.2247 15 6 1.6593 -6.9416 3.0971 16 8 3.0810 -7.0739 3.1554 17 6 3.7888 -5.8437 2.9887 18 6 3.4023 -4.8779 4.1120 19 6 2.2859 -2.8447 -0.0654 20 6 1.7721 -2.1400 -1.3248 21 7 2.0226 -0.6980 -1.1953 22 6 2.7027 -0.0177 -2.1699 23 1 3.3980 0.7627 -1.8986 24 6 2.4983 -0.3313 -3.5066 25 7 1.5365 -1.1625 -3.8479 26 14 3.5881 0.4264 -4.8210 27 1 4.7654 -0.4487 -5.0528 28 1 2.8182 0.5649 -6.0832 29 1 4.0474 1.7653 -4.3719 30 1 -0.3633 -1.0277 0.0051 31 1 -0.3634 0.5182 0.8874 32 1 -0.3634 0.5093 -0.8926 33 1 1.6110 -0.2790 2.1365 34 1 3.1329 -0.6477 1.2890 35 1 2.8679 -2.5509 2.8716 36 1 2.2005 -2.9863 5.5250 37 1 0.4187 -5.4476 6.3026 38 1 0.8503 -4.0307 7.4017 39 1 -0.2619 -2.4319 5.7765 40 1 -0.6931 -3.8486 4.6774 41 1 0.1080 -5.8829 4.1552 42 1 1.4371 -6.4653 5.1878 43 1 1.3730 -6.5155 2.1356 44 1 1.1979 -7.9224 3.2119 45 1 4.8615 -6.0336 3.0256 46 1 3.5305 -5.4033 2.0257 47 1 3.6971 -5.3000 5.0727 48 1 3.9073 -3.9237 3.9618 49 1 3.3697 -2.7436 -0.0084 50 1 2.0207 -3.9012 -0.1054 51 1 2.2971 -2.5250 -2.1990 52 1 0.7018 -2.3168 -1.4316 53 1 1.3934 -1.3813 -4.7821 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947571236.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:11 Heat of formation + Delta-G solvation = -65.731834 kcal Electronic energy + Delta-G solvation = -31834.654405 eV Core-core repulsion = 27899.297851 eV Total energy + Delta-G solvation = -3935.356553 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.18916 -40.08181 -38.81462 -38.11757 -36.04089 -34.43499 -33.80340 -32.50403 -32.03982 -31.15180 -28.59620 -27.18273 -26.12232 -24.74871 -24.20478 -23.63814 -23.22437 -22.25243 -22.07805 -20.62022 -19.71476 -18.65176 -17.76933 -17.53733 -17.37478 -16.95844 -16.64892 -16.14333 -15.99092 -15.64633 -15.55452 -15.52577 -15.07559 -14.99318 -14.62794 -14.43621 -14.18046 -14.07717 -13.87594 -13.35414 -13.25618 -13.09372 -12.90415 -12.72203 -12.67590 -12.58949 -12.51874 -12.29869 -12.09760 -12.05024 -11.98563 -11.87269 -11.78271 -11.55537 -11.54273 -11.39145 -11.11796 -11.05795 -10.57059 -10.51295 -10.31567 -9.95034 -8.53907 -7.86578 -5.45049 1.46397 1.46720 1.56083 1.66700 2.17648 2.49576 2.86305 2.91651 3.30293 3.39770 3.59498 3.63456 3.73990 3.81986 3.97392 3.99077 4.09534 4.09851 4.15575 4.25819 4.29257 4.33358 4.44299 4.51565 4.54219 4.63198 4.64947 4.70902 4.74673 4.76624 4.80650 4.84365 4.86654 4.89562 4.99401 5.02826 5.08926 5.09668 5.13292 5.15566 5.20526 5.26803 5.30308 5.33972 5.42134 5.49193 5.61626 5.67304 5.74011 6.19032 6.45798 6.63807 7.17662 7.33103 7.84793 8.42874 9.18856 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017737 B = 0.003208 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.241791 B = 8726.048334 C = 9500.983300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.161 3.839 3 H 0.069 0.931 4 C -0.117 4.117 5 C 0.166 3.834 6 H 0.058 0.942 7 N -0.708 5.708 8 C 0.522 3.478 9 O -0.581 6.581 10 C -0.042 4.042 11 C -0.143 4.143 12 C -0.158 4.158 13 C -0.192 4.192 14 C -0.126 4.126 15 C 0.049 3.951 16 O -0.395 6.395 17 C 0.049 3.951 18 C -0.134 4.134 19 C -0.130 4.130 20 C 0.192 3.808 21 N -0.597 5.597 22 C -0.266 4.266 23 H 0.067 0.933 24 C -0.042 4.042 25 N -0.934 5.934 26 Si 0.966 3.034 27 H -0.286 1.286 28 H -0.298 1.298 29 H -0.264 1.264 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.026 0.974 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.410 0.590 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.116 0.884 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.036 0.964 44 H 0.104 0.896 45 H 0.117 0.883 46 H 0.026 0.974 47 H 0.106 0.894 48 H 0.098 0.902 49 H 0.059 0.941 50 H 0.038 0.962 51 H 0.039 0.961 52 H -0.011 1.011 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.408 -5.709 24.516 25.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.054 3.946 3 H 0.087 0.913 4 C -0.156 4.156 5 C 0.061 3.939 6 H 0.076 0.924 7 N -0.359 5.359 8 C 0.310 3.690 9 O -0.460 6.460 10 C -0.045 4.045 11 C -0.162 4.162 12 C -0.195 4.195 13 C -0.229 4.229 14 C -0.163 4.163 15 C -0.027 4.027 16 O -0.314 6.314 17 C -0.028 4.028 18 C -0.172 4.172 19 C -0.170 4.170 20 C 0.066 3.934 21 N -0.320 5.320 22 C -0.396 4.396 23 H 0.085 0.915 24 C -0.239 4.239 25 N -0.579 5.579 26 Si 0.794 3.206 27 H -0.212 1.212 28 H -0.224 1.224 29 H -0.188 1.188 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.045 0.955 33 H 0.109 0.891 34 H 0.092 0.908 35 H 0.247 0.753 36 H 0.151 0.849 37 H 0.121 0.879 38 H 0.134 0.866 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.121 0.879 43 H 0.054 0.946 44 H 0.122 0.878 45 H 0.135 0.865 46 H 0.044 0.956 47 H 0.125 0.875 48 H 0.117 0.883 49 H 0.078 0.922 50 H 0.056 0.944 51 H 0.057 0.943 52 H 0.007 0.993 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.823 -6.237 23.909 24.870 hybrid contribution 0.035 0.520 -1.727 1.804 sum 2.858 -5.717 22.182 23.085 Atomic orbital electron populations 1.22158 0.98397 1.00066 1.00371 1.20717 0.92006 0.95511 0.86362 0.91283 1.22122 1.01813 0.92871 0.98792 1.20632 0.97866 0.92029 0.83354 0.92361 1.46044 1.35069 1.26865 1.27895 1.20980 0.80963 0.80055 0.87034 1.90675 1.33590 1.63567 1.58195 1.20397 0.97865 0.95294 0.90955 1.22215 0.95152 1.02050 0.96751 1.23220 1.01805 0.99334 0.95128 1.22957 0.94887 1.01605 1.03414 1.22139 1.00529 0.93447 1.00228 1.22751 0.80921 1.00982 0.98066 1.87875 1.18434 1.31428 1.93657 1.22779 0.98110 0.85192 0.96711 1.22283 0.92104 1.01425 1.01390 1.22302 1.00188 0.97966 0.96566 1.20281 0.95098 0.84055 0.93995 1.44214 1.64277 1.03174 1.20339 1.19438 1.16834 1.17277 0.86050 0.91520 1.26112 0.98044 0.99770 0.99933 1.70159 1.32623 1.38765 1.16304 0.85303 0.77956 0.78899 0.78462 1.21234 1.22426 1.18800 0.94951 0.90777 0.95507 0.89100 0.90807 0.75276 0.84928 0.87918 0.86608 0.87754 0.91107 0.91154 0.87918 0.94563 0.87786 0.86485 0.95609 0.87530 0.88340 0.92224 0.94361 0.94252 0.99297 0.94262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.80 9.04 71.98 0.65 -5.15 16 2 C 0.16 6.30 3.28 44.97 0.15 6.45 16 3 H 0.07 2.65 7.93 -2.38 -0.02 2.63 16 4 C -0.12 -3.49 5.03 30.67 0.15 -3.33 16 5 C 0.17 5.48 2.17 45.02 0.10 5.58 16 6 H 0.06 2.27 6.02 -2.39 -0.01 2.26 16 7 N -0.71 -17.72 4.96 -442.41 -2.20 -19.91 16 8 C 0.52 14.15 4.62 87.66 0.40 14.56 16 9 O -0.58 -21.39 13.86 -3.03 -0.04 -21.43 16 10 C -0.04 -0.78 0.53 -52.80 -0.03 -0.81 16 11 C -0.14 -2.01 5.15 -10.79 -0.06 -2.07 16 12 C -0.16 -1.87 9.58 30.60 0.29 -1.58 16 13 C -0.19 -3.19 9.54 30.60 0.29 -2.89 16 14 C -0.13 -2.50 3.15 30.69 0.10 -2.40 16 15 C 0.05 1.20 6.56 72.01 0.47 1.68 16 16 O -0.39 -9.73 10.77 -148.98 -1.60 -11.33 16 17 C 0.05 0.99 6.62 72.01 0.48 1.47 16 18 C -0.13 -1.97 4.78 30.68 0.15 -1.82 16 19 C -0.13 -5.23 5.65 30.67 0.17 -5.05 16 20 C 0.19 9.68 4.81 86.36 0.42 10.10 16 21 N -0.60 -29.46 2.65 -675.23 -1.79 -31.25 16 22 C -0.27 -14.38 9.50 84.03 0.80 -13.58 16 23 H 0.07 3.47 7.84 -2.91 -0.02 3.45 16 24 C -0.04 -2.37 5.06 84.86 0.43 -1.94 16 25 N -0.93 -56.45 11.45 21.65 0.25 -56.20 16 26 Si 0.97 44.85 29.56 68.60 2.03 46.88 16 27 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 28 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 29 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 30 H 0.03 1.33 5.74 -2.39 -0.01 1.31 16 31 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.13 16 34 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.41 7.41 7.38 -92.71 -0.68 6.72 16 36 H 0.13 1.32 8.12 -2.38 -0.02 1.30 16 37 H 0.10 1.22 5.83 -2.39 -0.01 1.20 16 38 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.58 7.68 -2.39 -0.02 1.56 16 41 H 0.07 1.57 7.12 -2.39 -0.02 1.56 16 42 H 0.10 1.56 6.80 -2.38 -0.02 1.54 16 43 H 0.04 1.14 6.13 -2.39 -0.01 1.13 16 44 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 45 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.03 0.66 7.38 -2.39 -0.02 0.65 16 47 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.10 1.04 6.97 -2.39 -0.02 1.03 16 49 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 50 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 51 H 0.04 2.25 6.57 -2.39 -0.02 2.23 16 52 H -0.01 -0.62 7.50 -2.39 -0.02 -0.64 16 53 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 Total: -1.00 -71.54 392.44 1.82 -69.71 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.22 Total: 24.33 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 4.96 Total: -0.80 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -3.74 Total: -107.36 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -1.65 Total: -32.76 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -71.54 1.82 -69.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947571236.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.980 kcal (2) G-P(sol) polarization free energy of solvation -71.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds