Wall clock time and date at job start Tue Mar 31 2020 20:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.58481 * 2 1 4 4 C 1.53159 * 109.59010 * 239.56512 * 2 1 3 5 5 C 1.53044 * 109.33026 * 185.57215 * 4 2 1 6 6 H 1.08994 * 109.46399 * 181.38117 * 5 4 2 7 7 N 1.46505 * 109.45596 * 301.35646 * 5 4 2 8 8 C 1.34771 * 119.99798 * 205.02459 * 7 5 4 9 9 O 1.21279 * 120.00164 * 4.90366 * 8 7 5 10 10 C 1.50701 * 120.00196 * 184.90163 * 8 7 5 11 11 C 1.52997 * 109.54212 * 292.17792 * 10 8 7 12 12 C 1.53000 * 117.50039 * 3.71846 * 11 10 8 13 13 C 1.52999 * 117.49741 * 295.05967 * 11 10 8 14 14 C 1.53180 * 109.53799 * 171.91201 * 10 8 7 15 15 C 1.53093 * 109.16212 * 297.10126 * 14 10 8 16 16 O 1.42909 * 109.41985 * 302.40384 * 15 14 10 17 17 C 1.42899 * 114.09790 * 61.15976 * 16 15 14 18 18 C 1.53093 * 109.41287 * 298.83776 * 17 16 15 19 19 C 1.53039 * 109.52560 * 61.36742 * 5 4 2 20 20 C 1.53191 * 109.31395 * 298.64303 * 19 5 4 21 21 N 1.46923 * 108.77423 * 54.63916 * 20 19 5 22 22 C 1.36938 * 120.63194 * 126.41149 * 21 20 19 23 23 H 1.08002 * 120.00043 * 207.68062 * 22 21 20 24 24 C 1.38810 * 119.99860 * 27.68697 * 22 21 20 25 25 N 1.31617 * 120.00350 * 17.20354 * 24 22 21 26 26 Si 1.86801 * 119.99799 * 197.20069 * 24 22 21 27 27 H 1.48508 * 109.47124 * 94.98569 * 26 24 22 28 28 H 1.48503 * 109.47308 * 214.98046 * 26 24 22 29 29 H 1.48492 * 109.47433 * 334.98469 * 26 24 22 30 30 H 1.08997 * 109.46925 * 299.71774 * 1 2 3 31 31 H 1.08997 * 109.46909 * 59.71942 * 1 2 3 32 32 H 1.09000 * 109.46882 * 179.72385 * 1 2 3 33 33 H 1.08995 * 109.48178 * 65.61797 * 4 2 1 34 34 H 1.09001 * 109.50028 * 305.53073 * 4 2 1 35 35 H 0.96997 * 119.99822 * 25.02382 * 7 5 4 36 36 H 1.09000 * 115.54882 * 149.39041 * 11 10 8 37 37 H 1.08996 * 117.49773 * 0.02562 * 12 11 10 38 38 H 1.09007 * 117.49842 * 145.02009 * 12 11 10 39 39 H 1.09003 * 117.49942 * 214.98028 * 13 11 10 40 40 H 1.08996 * 117.50153 * 359.97438 * 13 11 10 41 41 H 1.08996 * 109.51037 * 177.19902 * 14 10 8 42 42 H 1.09001 * 109.52847 * 57.00720 * 14 10 8 43 43 H 1.09000 * 109.47873 * 182.42175 * 15 14 10 44 44 H 1.08997 * 109.48045 * 62.39408 * 15 14 10 45 45 H 1.08998 * 109.48315 * 58.81721 * 17 16 15 46 46 H 1.08998 * 109.48250 * 178.84171 * 17 16 15 47 47 H 1.09001 * 109.52050 * 177.51901 * 18 17 16 48 48 H 1.09003 * 109.52231 * 297.70191 * 18 17 16 49 49 H 1.08999 * 109.50275 * 58.59727 * 19 5 4 50 50 H 1.09000 * 109.49617 * 178.66521 * 19 5 4 51 51 H 1.09002 * 109.58948 * 174.42332 * 20 19 5 52 52 H 1.08998 * 109.59105 * 294.84585 * 20 19 5 53 53 H 0.96997 * 120.00232 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7309 -1.2441 5 6 3.5675 -0.8495 -1.1691 6 1 3.9376 -1.3476 -2.0651 7 7 4.1570 0.4885 -1.0756 8 6 5.4208 0.6987 -1.4940 9 8 6.0393 -0.1968 -2.0291 10 6 6.0655 2.0465 -1.2969 11 6 5.3700 3.0811 -2.1839 12 6 4.1589 2.6162 -2.9952 13 6 5.4870 2.9051 -3.6993 14 6 7.5491 1.9641 -1.6691 15 6 8.2504 0.9844 -0.7247 16 8 8.0698 1.4146 0.6261 17 6 6.7044 1.4649 1.0448 18 6 5.9410 2.4642 0.1716 19 6 3.9569 -1.6656 0.0656 20 6 3.4651 -0.9452 1.3249 21 7 2.0226 -0.6980 1.1954 22 6 1.1538 -1.1099 2.1704 23 1 0.1302 -1.3441 1.9178 24 6 1.5887 -1.2263 3.4835 25 7 2.7020 -0.6355 3.8629 26 14 0.5938 -2.2213 4.7121 27 1 1.1343 -3.6027 4.7837 28 1 0.6820 -1.5854 6.0512 29 1 -0.8256 -2.2671 4.2784 30 1 -0.3633 0.5094 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0277 -0.0050 33 1 1.7658 -0.1695 -2.1361 34 1 1.6030 -1.7269 -1.2887 35 1 3.6378 1.2229 -0.7127 36 1 5.3545 4.0993 -1.7952 37 1 3.8574 1.5734 -2.8966 38 1 3.3468 3.3287 -3.1404 39 1 5.5482 3.8076 -4.3075 40 1 6.0598 2.0527 -4.0643 41 1 8.0035 2.9503 -1.5740 42 1 7.6481 1.6138 -2.6965 43 1 9.3149 0.9542 -0.9573 44 1 7.8226 -0.0103 -0.8497 45 1 6.2563 0.4766 0.9428 46 1 6.6552 1.7807 2.0868 47 1 4.8900 2.4716 0.4604 48 1 6.3630 3.4604 0.3040 49 1 3.4984 -2.6528 0.0088 50 1 5.0412 -1.7698 0.1057 51 1 3.6518 -1.5688 2.1992 52 1 3.9904 0.0039 1.4317 53 1 3.0061 -0.7172 4.7803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947571237.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:15 Heat of formation + Delta-G solvation = -53.477648 kcal Electronic energy + Delta-G solvation = -32893.266331 eV Core-core repulsion = 28958.441159 eV Total energy + Delta-G solvation = -3934.825172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.34353 -40.06028 -38.83972 -37.92280 -35.93574 -34.19631 -33.97163 -32.82646 -32.05658 -31.17988 -28.01193 -27.06625 -26.71700 -24.76706 -24.21191 -23.46367 -22.96375 -22.20076 -22.02753 -20.56089 -20.10424 -18.26807 -17.90799 -17.52592 -17.07681 -16.95679 -16.63361 -16.43378 -15.95140 -15.75282 -15.68201 -15.47755 -15.06894 -14.74393 -14.64841 -14.55241 -14.12222 -14.07385 -13.40364 -13.36995 -13.31592 -13.11022 -12.90510 -12.85456 -12.65860 -12.51920 -12.41232 -12.31720 -12.18189 -12.13834 -12.01957 -11.94134 -11.70118 -11.51576 -11.38291 -11.34537 -10.98482 -10.93824 -10.60496 -10.48129 -10.36971 -9.90279 -8.59367 -7.80984 -5.23243 1.46181 1.49663 1.56179 1.63946 2.24012 2.54026 2.79785 2.89878 3.34104 3.43497 3.61690 3.65362 3.69266 3.85688 3.97649 4.00871 4.07220 4.10015 4.19022 4.20122 4.23311 4.33931 4.43181 4.55617 4.59419 4.63789 4.68233 4.69433 4.75238 4.78701 4.79695 4.86638 4.93512 4.97505 5.01013 5.02948 5.05203 5.07720 5.10801 5.14696 5.18741 5.27284 5.28362 5.42558 5.54703 5.57283 5.62903 5.75570 5.78890 6.18819 6.45354 6.59871 7.21382 7.26891 7.94482 8.44589 9.24923 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.004331 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.618606 B = 6463.791358 C = 7464.140062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.163 3.837 3 H 0.025 0.975 4 C -0.125 4.125 5 C 0.159 3.841 6 H 0.074 0.926 7 N -0.704 5.704 8 C 0.527 3.473 9 O -0.576 6.576 10 C -0.045 4.045 11 C -0.142 4.142 12 C -0.195 4.195 13 C -0.167 4.167 14 C -0.118 4.118 15 C 0.047 3.953 16 O -0.395 6.395 17 C 0.058 3.942 18 C -0.132 4.132 19 C -0.142 4.142 20 C 0.190 3.810 21 N -0.599 5.599 22 C -0.245 4.245 23 H 0.075 0.925 24 C -0.050 4.050 25 N -0.932 5.932 26 Si 0.952 3.048 27 H -0.295 1.295 28 H -0.300 1.300 29 H -0.267 1.267 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.405 0.595 36 H 0.136 0.864 37 H 0.088 0.912 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.109 0.891 44 H 0.040 0.960 45 H 0.024 0.976 46 H 0.099 0.901 47 H 0.077 0.923 48 H 0.105 0.895 49 H 0.058 0.942 50 H 0.038 0.962 51 H 0.044 0.956 52 H 0.006 0.994 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.497 9.504 -14.689 18.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.057 3.943 3 H 0.043 0.957 4 C -0.164 4.164 5 C 0.055 3.945 6 H 0.092 0.908 7 N -0.355 5.355 8 C 0.314 3.686 9 O -0.456 6.456 10 C -0.048 4.048 11 C -0.160 4.160 12 C -0.232 4.232 13 C -0.204 4.204 14 C -0.156 4.156 15 C -0.029 4.029 16 O -0.314 6.314 17 C -0.019 4.019 18 C -0.170 4.170 19 C -0.182 4.182 20 C 0.064 3.936 21 N -0.323 5.323 22 C -0.375 4.375 23 H 0.093 0.907 24 C -0.245 4.245 25 N -0.579 5.579 26 Si 0.782 3.218 27 H -0.223 1.223 28 H -0.227 1.227 29 H -0.191 1.191 30 H 0.060 0.940 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.243 0.757 36 H 0.154 0.846 37 H 0.106 0.894 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.099 0.901 41 H 0.115 0.885 42 H 0.099 0.901 43 H 0.127 0.873 44 H 0.058 0.942 45 H 0.042 0.958 46 H 0.117 0.883 47 H 0.096 0.904 48 H 0.123 0.877 49 H 0.077 0.923 50 H 0.057 0.943 51 H 0.062 0.938 52 H 0.024 0.976 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 5.096 8.906 -14.781 17.993 hybrid contribution -0.697 -0.812 1.383 1.749 sum 4.399 8.094 -13.397 16.259 Atomic orbital electron populations 1.21747 0.94615 1.01353 1.01145 1.20609 0.94234 0.93132 0.86301 0.95743 1.22223 0.92786 1.02352 0.99025 1.20722 0.93901 0.82973 0.96942 0.90802 1.46199 1.14216 1.11821 1.63276 1.20753 0.81337 0.90024 0.76461 1.90617 1.63503 1.46730 1.44797 1.20474 0.96464 0.91168 0.96665 1.22246 1.01861 0.99379 0.92519 1.23432 0.92495 1.02987 1.04278 1.22998 0.99891 1.03725 0.93783 1.21969 0.92167 1.01251 1.00197 1.22829 1.01870 0.96973 0.81210 1.87874 1.25621 1.88367 1.29530 1.22571 0.82166 0.97729 0.99442 1.22206 1.01722 1.01069 0.92024 1.22380 0.98672 0.99469 0.97682 1.20376 0.83510 0.95847 0.93826 1.44333 1.02604 1.65800 1.19554 1.19497 0.94720 1.36408 0.86915 0.90704 1.25632 0.99045 1.01339 0.98517 1.70158 1.25575 1.45568 1.16570 0.85465 0.79181 0.78348 0.78772 1.22266 1.22712 1.19129 0.93991 0.90517 0.93363 0.89282 0.90931 0.75727 0.84634 0.89367 0.86713 0.86456 0.90126 0.88483 0.90139 0.87273 0.94208 0.95752 0.88255 0.90419 0.87677 0.92340 0.94276 0.93789 0.97601 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.22 7.93 71.98 0.57 -3.65 16 2 C 0.16 5.75 3.19 44.96 0.14 5.89 16 3 H 0.03 0.87 6.65 -2.38 -0.02 0.85 16 4 C -0.12 -3.67 5.07 30.66 0.16 -3.51 16 5 C 0.16 5.14 2.82 45.02 0.13 5.27 16 6 H 0.07 2.43 7.51 -2.39 -0.02 2.41 16 7 N -0.70 -20.63 2.41 -442.40 -1.07 -21.70 16 8 C 0.53 15.65 3.52 87.66 0.31 15.96 16 9 O -0.58 -20.72 13.81 -3.03 -0.04 -20.76 16 10 C -0.04 -1.05 0.51 -52.81 -0.03 -1.07 16 11 C -0.14 -2.55 5.23 -10.79 -0.06 -2.61 16 12 C -0.19 -3.58 9.20 30.62 0.28 -3.30 16 13 C -0.17 -2.85 9.60 30.62 0.29 -2.55 16 14 C -0.12 -2.69 4.29 30.69 0.13 -2.56 16 15 C 0.05 1.30 6.56 72.01 0.47 1.77 16 16 O -0.39 -12.15 10.77 -148.98 -1.60 -13.75 16 17 C 0.06 1.77 6.62 72.01 0.48 2.25 16 18 C -0.13 -3.23 4.76 30.69 0.15 -3.08 16 19 C -0.14 -5.57 5.77 30.67 0.18 -5.39 16 20 C 0.19 8.82 5.05 86.36 0.44 9.26 16 21 N -0.60 -27.29 2.99 -675.28 -2.02 -29.31 16 22 C -0.25 -12.53 8.63 84.03 0.72 -11.81 16 23 H 0.08 3.71 6.18 -2.91 -0.02 3.69 16 24 C -0.05 -2.70 4.91 84.86 0.42 -2.29 16 25 N -0.93 -53.53 11.18 21.65 0.24 -53.29 16 26 Si 0.95 44.22 29.59 68.60 2.03 46.25 16 27 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 29 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 30 H 0.04 1.51 7.60 -2.39 -0.02 1.49 16 31 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.61 7.46 -2.39 -0.02 1.59 16 33 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.41 11.42 5.60 -92.71 -0.52 10.90 16 36 H 0.14 1.91 8.08 -2.39 -0.02 1.90 16 37 H 0.09 2.00 5.43 -2.39 -0.01 1.98 16 38 H 0.11 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.08 1.65 7.36 -2.39 -0.02 1.63 16 41 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.08 1.85 6.93 -2.39 -0.02 1.83 16 43 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.04 1.33 6.10 -2.39 -0.01 1.31 16 45 H 0.02 0.89 7.25 -2.39 -0.02 0.88 16 46 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 47 H 0.08 1.97 7.19 -2.39 -0.02 1.95 16 48 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 51 H 0.04 2.41 6.03 -2.39 -0.01 2.40 16 52 H 0.01 0.29 7.61 -2.39 -0.02 0.27 16 53 H 0.24 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -63.67 386.57 2.70 -60.98 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: 0.38 Total: 33.01 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 4.78 Total: -1.42 kcal Atomic # 7 Polarization: -101.45 SS G_CDS: -2.85 Total: -104.30 kcal Atomic # 8 Polarization: -32.87 SS G_CDS: -1.65 Total: -34.51 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -63.67 2.70 -60.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947571237.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.497 kcal (2) G-P(sol) polarization free energy of solvation -63.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds