Wall clock time and date at job start Tue Mar 31 2020 20:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.58679 * 2 1 4 4 C 1.53196 * 109.58444 * 120.28216 * 2 1 3 5 5 C 1.53047 * 109.31116 * 174.42306 * 4 2 1 6 6 H 1.08997 * 109.45830 * 58.65566 * 5 4 2 7 7 N 1.46498 * 109.45825 * 178.61579 * 5 4 2 8 8 C 1.34775 * 119.99578 * 205.00145 * 7 5 4 9 9 O 1.21282 * 120.00393 * 5.58791 * 8 7 5 10 10 C 1.50704 * 119.99776 * 185.59136 * 8 7 5 11 11 C 1.53001 * 109.54356 * 290.46576 * 10 8 7 12 12 C 1.53000 * 117.49606 * 10.74948 * 11 10 8 13 13 C 1.52999 * 117.49853 * 302.12722 * 11 10 8 14 14 C 1.53178 * 109.54416 * 170.19881 * 10 8 7 15 15 C 1.53096 * 109.16460 * 297.11657 * 14 10 8 16 16 O 1.42908 * 109.41083 * 302.38831 * 15 14 10 17 17 C 1.42903 * 114.09629 * 61.16105 * 16 15 14 18 18 C 1.53092 * 109.41503 * 298.83803 * 17 16 15 19 19 C 1.53037 * 109.53609 * 298.63730 * 5 4 2 20 20 C 1.53190 * 109.31481 * 61.36467 * 19 5 4 21 21 N 1.46918 * 109.58806 * 239.57146 * 2 1 3 22 22 C 1.36941 * 120.63308 * 6.60334 * 21 2 1 23 23 H 1.08002 * 119.99698 * 323.68850 * 22 21 2 24 24 C 1.38806 * 120.00226 * 143.68094 * 22 21 2 25 25 N 1.31627 * 120.00267 * 2.28716 * 24 22 21 26 26 Si 1.86799 * 120.00275 * 182.29010 * 24 22 21 27 27 H 1.48499 * 109.47350 * 59.99698 * 26 24 22 28 28 H 1.48501 * 109.47515 * 180.02562 * 26 24 22 29 29 H 1.48510 * 109.46882 * 299.99900 * 26 24 22 30 30 H 1.09004 * 109.46948 * 299.71836 * 1 2 3 31 31 H 1.08992 * 109.46815 * 59.71881 * 1 2 3 32 32 H 1.08998 * 109.46992 * 179.71553 * 1 2 3 33 33 H 1.09002 * 109.49840 * 294.36840 * 4 2 1 34 34 H 1.09001 * 109.50040 * 54.47277 * 4 2 1 35 35 H 0.96995 * 120.00465 * 24.99491 * 7 5 4 36 36 H 1.09004 * 115.54971 * 156.45357 * 11 10 8 37 37 H 1.08996 * 117.50354 * 359.97438 * 12 11 10 38 38 H 1.09008 * 117.49606 * 145.01938 * 12 11 10 39 39 H 1.08995 * 117.49690 * 214.97800 * 13 11 10 40 40 H 1.08998 * 117.49783 * 359.97438 * 13 11 10 41 41 H 1.09008 * 109.52099 * 57.01837 * 14 10 8 42 42 H 1.08994 * 109.52297 * 177.20251 * 14 10 8 43 43 H 1.09003 * 109.47943 * 182.40857 * 15 14 10 44 44 H 1.08994 * 109.47985 * 62.37018 * 15 14 10 45 45 H 1.08998 * 109.47604 * 178.85760 * 17 16 15 46 46 H 1.08994 * 109.49037 * 58.82858 * 17 16 15 47 47 H 1.09004 * 109.52301 * 297.70708 * 18 17 16 48 48 H 1.08998 * 109.51961 * 177.51600 * 18 17 16 49 49 H 1.09004 * 109.49576 * 181.31683 * 19 5 4 50 50 H 1.09006 * 109.49694 * 301.41123 * 19 5 4 51 51 H 1.08995 * 109.58568 * 65.15760 * 20 19 5 52 52 H 1.09009 * 109.58322 * 185.57813 * 20 19 5 53 53 H 0.96994 * 120.00348 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5676 -0.8465 1.1713 6 1 4.0061 0.1487 1.0992 7 7 4.0652 -1.5128 2.3774 8 6 5.3294 -1.2986 2.7925 9 8 6.0223 -0.4786 2.2283 10 6 5.8821 -2.0781 3.9578 11 6 5.1903 -1.6308 5.2471 12 6 3.9602 -0.7309 5.1131 13 6 5.2815 -0.1498 5.6205 14 6 7.3896 -1.8312 4.0708 15 6 8.0804 -2.3531 2.8082 16 8 7.7856 -3.7419 2.6451 17 6 6.3945 -4.0284 2.4870 18 6 5.6361 -3.5738 3.7367 19 6 3.9569 -1.6657 -0.0613 20 6 3.4651 -0.9486 -1.3224 21 7 2.0226 -0.7010 -1.1935 22 6 1.1538 -1.1159 -2.1673 23 1 0.1743 -1.4819 -1.8969 24 6 1.5318 -1.0658 -3.5020 25 7 2.7413 -0.6620 -3.8288 26 14 0.3242 -1.5712 -4.8345 27 1 -0.8777 -0.7014 -4.7691 28 1 0.9672 -1.4286 -6.1654 29 1 -0.0770 -2.9861 -4.6281 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0276 -0.0051 33 1 1.7661 -0.1641 2.1371 34 1 1.6030 -1.7237 1.2936 35 1 3.4849 -2.1079 2.8772 36 1 5.1973 -2.3563 6.0605 37 1 3.6440 -0.4572 4.1065 38 1 3.1575 -0.8644 5.8384 39 1 5.3481 0.0989 6.6796 40 1 5.8347 0.5056 4.9479 41 1 7.5769 -0.7622 4.1730 42 1 7.7802 -2.3553 4.9429 43 1 9.1581 -2.2187 2.9015 44 1 7.7187 -1.8005 1.9411 45 1 6.2578 -5.1009 2.3489 46 1 6.0107 -3.4979 1.6157 47 1 5.9913 -4.1332 4.6021 48 1 4.5693 -3.7511 3.5999 49 1 5.0413 -1.7697 -0.1013 50 1 3.4983 -2.6528 -0.0018 51 1 3.9904 0.0002 -1.4316 52 1 3.6519 -1.5746 -2.1951 53 1 3.0053 -0.6267 -4.7614 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947571239.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:24 Heat of formation + Delta-G solvation = -58.622186 kcal Electronic energy + Delta-G solvation = -31992.432204 eV Core-core repulsion = 28057.383948 eV Total energy + Delta-G solvation = -3935.048256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.32979 -39.92792 -38.89790 -37.94552 -36.17452 -34.29571 -34.02171 -32.94903 -32.05787 -31.12728 -28.03195 -27.16263 -26.50522 -24.75821 -24.21895 -23.35279 -23.02739 -22.01279 -21.86467 -21.24358 -20.12155 -18.30934 -18.00599 -17.42896 -17.20871 -16.99596 -16.76038 -16.43128 -15.79346 -15.74130 -15.67771 -15.51930 -15.02763 -14.81713 -14.74808 -14.47079 -14.39445 -14.11186 -13.38478 -13.33120 -13.29978 -12.89998 -12.83182 -12.79627 -12.71123 -12.60508 -12.48788 -12.32988 -12.22173 -12.08256 -12.02817 -11.88390 -11.71451 -11.55479 -11.46520 -11.39874 -11.29811 -10.91564 -10.63237 -10.50555 -10.38389 -9.92088 -8.52904 -7.83759 -5.39997 1.47506 1.49269 1.55549 1.61103 2.14708 2.51222 2.77174 2.90265 3.33250 3.42480 3.58614 3.62651 3.69408 3.82896 3.95455 3.97495 4.05698 4.10068 4.16895 4.25634 4.26709 4.32161 4.39110 4.53701 4.61166 4.64156 4.67745 4.71980 4.74152 4.76564 4.79796 4.82424 4.87672 4.95956 5.03073 5.03897 5.05502 5.06759 5.09634 5.16250 5.16461 5.25931 5.27653 5.40373 5.50212 5.57331 5.58827 5.71332 5.76963 6.18464 6.48273 6.57855 7.19783 7.27214 7.87692 8.43664 9.21789 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016704 B = 0.003388 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.843585 B = 8261.976467 C = 9229.429653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.160 3.840 3 H 0.008 0.992 4 C -0.117 4.117 5 C 0.163 3.837 6 H 0.051 0.949 7 N -0.707 5.707 8 C 0.522 3.478 9 O -0.580 6.580 10 C -0.046 4.046 11 C -0.131 4.131 12 C -0.196 4.196 13 C -0.182 4.182 14 C -0.121 4.121 15 C 0.049 3.951 16 O -0.395 6.395 17 C 0.048 3.952 18 C -0.133 4.133 19 C -0.127 4.127 20 C 0.183 3.817 21 N -0.603 5.603 22 C -0.252 4.252 23 H 0.077 0.923 24 C -0.049 4.049 25 N -0.940 5.940 26 Si 0.964 3.036 27 H -0.275 1.275 28 H -0.300 1.300 29 H -0.274 1.274 30 H 0.076 0.924 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.412 0.588 36 H 0.145 0.855 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.105 0.895 44 H 0.034 0.966 45 H 0.116 0.884 46 H 0.024 0.976 47 H 0.109 0.891 48 H 0.096 0.904 49 H 0.035 0.965 50 H 0.061 0.939 51 H -0.019 1.019 52 H 0.062 0.938 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.919 -5.946 23.449 24.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.054 3.946 3 H 0.025 0.975 4 C -0.156 4.156 5 C 0.058 3.942 6 H 0.069 0.931 7 N -0.359 5.359 8 C 0.310 3.690 9 O -0.459 6.459 10 C -0.049 4.049 11 C -0.149 4.149 12 C -0.233 4.233 13 C -0.219 4.219 14 C -0.158 4.158 15 C -0.027 4.027 16 O -0.314 6.314 17 C -0.028 4.028 18 C -0.171 4.171 19 C -0.168 4.168 20 C 0.056 3.944 21 N -0.327 5.327 22 C -0.382 4.382 23 H 0.095 0.905 24 C -0.244 4.244 25 N -0.586 5.586 26 Si 0.792 3.208 27 H -0.201 1.201 28 H -0.227 1.227 29 H -0.199 1.199 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.250 0.750 36 H 0.163 0.837 37 H 0.108 0.892 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.119 0.881 43 H 0.123 0.877 44 H 0.052 0.948 45 H 0.134 0.866 46 H 0.042 0.958 47 H 0.127 0.873 48 H 0.114 0.886 49 H 0.054 0.946 50 H 0.080 0.920 51 H -0.001 1.001 52 H 0.080 0.920 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 3.590 -5.498 22.868 23.792 hybrid contribution -0.464 0.328 -1.582 1.681 sum 3.126 -5.170 21.286 22.127 Atomic orbital electron populations 1.21689 0.93791 1.01693 1.01054 1.20642 0.94746 0.92729 0.86527 0.97453 1.22178 0.92419 1.02214 0.98793 1.20618 0.94995 0.95060 0.83538 0.93088 1.46223 1.13448 1.48626 1.27620 1.20975 0.81405 0.82075 0.84553 1.90677 1.59405 1.36633 1.59183 1.20528 0.96449 0.96023 0.91888 1.22245 1.01077 0.94395 0.97156 1.23517 0.92244 1.03681 1.03816 1.22963 1.00911 0.95569 1.02447 1.21959 0.92435 1.02339 0.99105 1.22752 1.01202 0.81557 0.97206 1.87878 1.24937 1.24993 1.93579 1.22769 0.81373 1.02300 0.96390 1.22269 1.02389 0.92379 1.00020 1.22308 0.98363 0.99641 0.96454 1.20513 0.83817 0.95240 0.94825 1.44309 1.02393 1.65399 1.20597 1.19424 0.97945 1.35083 0.85749 0.90547 1.26106 0.98074 1.00181 1.00033 1.70118 1.19380 1.52631 1.16478 0.85396 0.78790 0.78396 0.78188 1.20061 1.22652 1.19939 0.90527 0.94205 0.92603 0.89404 0.90557 0.74998 0.83719 0.89197 0.86227 0.86582 0.91259 0.91067 0.88099 0.87672 0.94800 0.86586 0.95768 0.87251 0.88561 0.94579 0.92037 1.00126 0.91993 0.94363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.26 8.01 71.98 0.58 -3.68 16 2 C 0.16 6.32 3.50 44.98 0.16 6.47 16 3 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 4 C -0.12 -3.54 4.84 30.68 0.15 -3.39 16 5 C 0.16 5.48 2.46 45.02 0.11 5.59 16 6 H 0.05 2.06 7.50 -2.39 -0.02 2.04 16 7 N -0.71 -17.97 3.11 -442.40 -1.37 -19.35 16 8 C 0.52 14.37 3.54 87.66 0.31 14.68 16 9 O -0.58 -21.62 13.89 -3.03 -0.04 -21.66 16 10 C -0.05 -0.88 0.52 -52.81 -0.03 -0.91 16 11 C -0.13 -1.84 5.13 -10.79 -0.06 -1.89 16 12 C -0.20 -3.02 9.25 30.60 0.28 -2.73 16 13 C -0.18 -3.00 9.55 30.59 0.29 -2.71 16 14 C -0.12 -2.48 4.38 30.69 0.13 -2.35 16 15 C 0.05 1.25 6.56 72.01 0.47 1.72 16 16 O -0.39 -10.15 10.77 -148.98 -1.60 -11.75 16 17 C 0.05 1.05 6.62 72.01 0.48 1.53 16 18 C -0.13 -2.07 4.77 30.68 0.15 -1.92 16 19 C -0.13 -5.14 5.65 30.67 0.17 -4.96 16 20 C 0.18 9.29 5.24 86.36 0.45 9.74 16 21 N -0.60 -29.73 2.99 -675.23 -2.02 -31.75 16 22 C -0.25 -13.35 8.41 84.03 0.71 -12.64 16 23 H 0.08 3.83 6.41 -2.91 -0.02 3.81 16 24 C -0.05 -2.72 5.28 84.86 0.45 -2.28 16 25 N -0.94 -56.54 10.76 21.65 0.23 -56.30 16 26 Si 0.96 44.55 29.55 68.60 2.03 46.57 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 28 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 29 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.04 1.52 7.71 -2.39 -0.02 1.50 16 32 H 0.05 1.87 7.37 -2.39 -0.02 1.85 16 33 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.41 7.81 7.01 -92.71 -0.65 7.16 16 36 H 0.15 1.26 8.13 -2.38 -0.02 1.24 16 37 H 0.09 1.80 5.15 -2.39 -0.01 1.79 16 38 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 1.55 7.76 -2.39 -0.02 1.53 16 41 H 0.07 1.64 7.34 -2.38 -0.02 1.62 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.03 1.10 6.17 -2.39 -0.01 1.09 16 45 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.02 0.67 7.38 -2.39 -0.02 0.65 16 47 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 48 H 0.10 1.18 7.12 -2.39 -0.02 1.17 16 49 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 50 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 51 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 52 H 0.06 3.58 6.06 -2.38 -0.01 3.56 16 53 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -70.76 391.37 2.27 -68.49 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: 0.24 Total: 25.47 kcal Atomic # 6 Polarization: -4.53 SS G_CDS: 4.81 Total: 0.28 kcal Atomic # 7 Polarization: -104.24 SS G_CDS: -3.16 Total: -107.40 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: -1.65 Total: -33.41 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -70.76 2.27 -68.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947571239.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.871 kcal (2) G-P(sol) polarization free energy of solvation -70.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds