Wall clock time and date at job start Tue Mar 31 2020 20:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.70057 * 2 1 4 4 C 1.53192 * 109.58417 * 239.64025 * 2 1 3 5 5 C 1.53041 * 109.31031 * 185.57399 * 4 2 1 6 6 H 1.08998 * 109.46587 * 301.35182 * 5 4 2 7 7 N 1.46502 * 109.44939 * 181.37718 * 5 4 2 8 8 C 1.34783 * 120.00070 * 154.93874 * 7 5 4 9 9 O 1.21281 * 119.99397 * 0.02562 * 8 7 5 10 10 C 1.50693 * 120.00128 * 180.02562 * 8 7 5 11 11 C 1.53870 * 113.60485 * 279.18336 * 10 8 7 12 12 C 1.53477 * 86.88818 * 220.36712 * 11 10 8 13 13 C 1.53325 * 87.58169 * 25.10644 * 12 11 10 14 14 C 1.52815 * 113.70112 * 139.89674 * 12 11 10 15 15 C 1.53268 * 108.88154 * 184.07729 * 14 12 11 16 16 O 1.42886 * 109.32870 * 304.69074 * 15 14 12 17 17 C 1.42900 * 114.36229 * 62.99061 * 16 15 14 18 18 C 1.52826 * 113.56285 * 270.33952 * 12 11 10 19 19 C 1.53044 * 109.53797 * 61.36874 * 5 4 2 20 20 C 1.53189 * 109.31189 * 298.63530 * 19 5 4 21 21 N 1.46927 * 109.58644 * 120.35254 * 2 1 3 22 22 C 1.36934 * 120.63401 * 353.67310 * 21 2 1 23 23 H 1.08005 * 119.99844 * 28.80890 * 22 21 2 24 24 C 1.38816 * 120.00268 * 208.82144 * 22 21 2 25 25 N 1.31612 * 119.99748 * 15.04953 * 24 22 21 26 26 Si 1.86796 * 120.00120 * 195.05369 * 24 22 21 27 27 H 1.48500 * 109.47032 * 89.99376 * 26 24 22 28 28 H 1.48494 * 109.47144 * 209.99508 * 26 24 22 29 29 H 1.48500 * 109.46905 * 329.99873 * 26 24 22 30 30 H 1.09004 * 109.46718 * 299.64632 * 1 2 3 31 31 H 1.08999 * 109.47207 * 59.64435 * 1 2 3 32 32 H 1.09000 * 109.47091 * 179.64904 * 1 2 3 33 33 H 1.09002 * 109.49597 * 65.63034 * 4 2 1 34 34 H 1.08994 * 109.52983 * 305.54427 * 4 2 1 35 35 H 0.97003 * 119.99992 * 334.94777 * 7 5 4 36 36 H 1.09009 * 112.83870 * 50.33404 * 10 8 7 37 37 H 1.09003 * 113.63378 * 334.84962 * 11 10 8 38 38 H 1.08991 * 113.64190 * 105.81926 * 11 10 8 39 39 H 1.09002 * 113.63961 * 220.38360 * 13 12 11 40 40 H 1.08996 * 113.71933 * 89.41830 * 13 12 11 41 41 H 1.09001 * 109.56836 * 303.89499 * 14 12 11 42 42 H 1.09003 * 109.57239 * 64.25651 * 14 12 11 43 43 H 1.09004 * 109.49085 * 184.73949 * 15 14 12 44 44 H 1.08990 * 109.51845 * 64.66595 * 15 14 12 45 45 H 1.08997 * 109.49778 * 177.04955 * 17 16 15 46 46 H 1.09009 * 109.51522 * 56.97959 * 17 16 15 47 47 H 1.08998 * 109.57005 * 295.67196 * 18 12 11 48 48 H 1.09000 * 109.57437 * 55.90924 * 18 12 11 49 49 H 1.09000 * 109.50216 * 178.67759 * 19 5 4 50 50 H 1.09008 * 109.51917 * 58.59889 * 19 5 4 51 51 H 1.09003 * 109.58788 * 294.84236 * 20 19 5 52 52 H 1.09005 * 109.59021 * 174.41760 * 20 19 5 53 53 H 0.97000 * 120.00162 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0261 0.0000 4 6 2.0435 -0.7295 -1.2454 5 6 3.5674 -0.8480 -1.1701 6 1 4.0061 0.1473 -1.0993 7 7 4.0649 -1.5161 -2.3753 8 6 5.3287 -1.3017 -2.7918 9 8 6.0542 -0.5560 -2.1684 10 6 5.8402 -1.9884 -4.0318 11 6 6.2865 -3.4413 -3.7919 12 6 7.4654 -3.1457 -4.7290 13 6 7.3106 -1.6677 -4.3515 14 6 8.7862 -3.7602 -4.2672 15 6 9.9007 -3.3145 -5.2203 16 8 9.5444 -3.6615 -6.5598 17 6 8.3694 -3.0089 -7.0452 18 6 7.1653 -3.4367 -6.1989 19 6 3.9569 -1.6657 0.0635 20 6 3.4651 -0.9469 1.3237 21 7 2.0225 -0.6995 1.1945 22 6 1.1532 -1.1180 2.1662 23 1 0.1360 -1.3729 1.9073 24 6 1.5790 -1.2144 3.4839 25 7 2.7004 -0.6354 3.8570 26 14 0.5603 -2.1659 4.7274 27 1 0.9973 -3.5851 4.7429 28 1 0.7482 -1.5753 6.0768 29 1 -0.8743 -2.0939 4.3508 30 1 -0.3633 0.5084 0.8932 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3633 -1.0276 -0.0063 33 1 1.7660 -0.1669 -2.1368 34 1 1.6030 -1.7254 -1.2919 35 1 3.4846 -2.1126 -2.8737 36 1 5.1725 -1.8724 -4.8856 37 1 6.5857 -3.6423 -2.7632 38 1 5.5905 -4.1827 -4.1841 39 1 7.4362 -0.9862 -5.1929 40 1 7.8938 -1.3747 -3.4785 41 1 9.0129 -3.4212 -3.2564 42 1 8.7075 -4.8473 -4.2806 43 1 10.8313 -3.8138 -4.9504 44 1 10.0324 -2.2350 -5.1470 45 1 8.2011 -3.2888 -8.0851 46 1 8.4977 -1.9287 -6.9754 47 1 6.9871 -4.5039 -6.3308 48 1 6.2821 -2.8782 -6.5088 49 1 5.0412 -1.7696 0.1037 50 1 3.4987 -2.6531 0.0056 51 1 3.9903 0.0021 1.4317 52 1 3.6518 -1.5717 2.1972 53 1 2.9982 -0.7030 4.7777 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947930846.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:02 Heat of formation + Delta-G solvation = -77.053991 kcal Electronic energy + Delta-G solvation = -30278.078825 eV Core-core repulsion = 26342.231306 eV Total energy + Delta-G solvation = -3935.847519 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.00004 -40.53054 -39.26641 -37.94186 -36.06260 -34.22704 -33.05931 -32.26408 -31.98434 -31.11365 -28.04842 -27.05566 -26.87324 -25.86178 -24.65057 -23.83527 -23.18394 -22.07588 -21.30501 -20.62655 -19.18525 -18.48919 -18.01354 -17.29345 -17.01261 -16.93284 -16.69221 -16.39824 -15.83289 -15.75600 -15.64112 -15.35029 -15.10239 -14.89494 -14.78985 -14.53943 -14.34697 -14.14129 -13.55295 -13.34274 -13.12004 -12.97224 -12.79506 -12.74847 -12.64642 -12.61914 -12.51969 -12.38712 -12.20427 -12.09689 -12.05225 -11.84952 -11.73092 -11.50729 -11.44066 -11.35518 -11.27194 -10.98886 -10.61998 -10.56062 -10.25855 -9.97836 -8.66225 -7.84091 -5.30898 1.47049 1.48122 1.56835 1.67107 2.24791 2.52117 3.00462 3.31852 3.39195 3.51883 3.55357 3.60870 3.69986 3.85501 3.99654 4.06935 4.12797 4.18828 4.26374 4.29467 4.38770 4.39769 4.51803 4.57042 4.60529 4.71098 4.73497 4.74778 4.78323 4.80366 4.83216 4.85600 4.92617 4.95295 4.98341 5.06438 5.09881 5.10936 5.14014 5.15622 5.20719 5.37483 5.38192 5.47889 5.51707 5.54987 5.61334 5.70162 5.72243 6.31457 6.42316 6.66407 7.16255 7.35609 7.88210 8.41088 9.23348 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023063 B = 0.002259 C = 0.002162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.782878 B =12391.659664 C =12949.337669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.009 0.991 4 C -0.116 4.116 5 C 0.160 3.840 6 H 0.051 0.949 7 N -0.709 5.709 8 C 0.514 3.486 9 O -0.591 6.591 10 C -0.126 4.126 11 C -0.107 4.107 12 C -0.075 4.075 13 C -0.111 4.111 14 C -0.139 4.139 15 C 0.061 3.939 16 O -0.403 6.403 17 C 0.055 3.945 18 C -0.125 4.125 19 C -0.128 4.128 20 C 0.183 3.817 21 N -0.603 5.603 22 C -0.246 4.246 23 H 0.082 0.918 24 C -0.060 4.060 25 N -0.943 5.943 26 Si 0.965 3.035 27 H -0.288 1.288 28 H -0.301 1.301 29 H -0.263 1.263 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.414 0.586 36 H 0.144 0.856 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.050 0.950 45 H 0.108 0.892 46 H 0.053 0.947 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.040 0.960 50 H 0.061 0.939 51 H -0.016 1.016 52 H 0.055 0.945 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.400 -7.288 -25.140 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.027 0.973 4 C -0.156 4.156 5 C 0.055 3.945 6 H 0.069 0.931 7 N -0.360 5.360 8 C 0.302 3.698 9 O -0.472 6.472 10 C -0.147 4.147 11 C -0.145 4.145 12 C -0.075 4.075 13 C -0.149 4.149 14 C -0.177 4.177 15 C -0.015 4.015 16 O -0.323 6.323 17 C -0.022 4.022 18 C -0.163 4.163 19 C -0.168 4.168 20 C 0.056 3.944 21 N -0.327 5.327 22 C -0.377 4.377 23 H 0.099 0.901 24 C -0.254 4.254 25 N -0.590 5.590 26 Si 0.794 3.206 27 H -0.215 1.215 28 H -0.228 1.228 29 H -0.188 1.188 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.251 0.749 36 H 0.162 0.838 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.118 0.882 44 H 0.068 0.932 45 H 0.126 0.874 46 H 0.071 0.929 47 H 0.098 0.902 48 H 0.113 0.887 49 H 0.058 0.942 50 H 0.080 0.920 51 H 0.002 0.998 52 H 0.074 0.926 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.033 -6.868 -24.666 26.553 hybrid contribution -0.369 -0.036 1.749 1.787 sum 6.664 -6.904 -22.918 24.845 Atomic orbital electron populations 1.21709 0.93757 1.01759 1.01149 1.20659 0.94794 0.92833 0.86549 0.97318 1.22167 0.92431 1.02236 0.98738 1.20624 0.94989 0.95019 0.83826 0.93100 1.46077 1.13691 1.48374 1.27824 1.21252 0.81248 0.80627 0.86683 1.90689 1.57508 1.39698 1.59267 1.22863 0.98702 0.97530 0.95555 1.22892 0.97810 0.94111 0.99688 1.21513 0.94855 0.95196 0.95980 1.22860 0.94048 0.96580 1.01399 1.22095 0.94740 1.01492 0.99355 1.22628 0.97644 0.99736 0.81542 1.87862 1.45358 1.69408 1.29629 1.22775 0.84100 0.96656 0.98620 1.21975 0.99292 1.03169 0.91854 1.22280 0.98680 0.99582 0.96268 1.20451 0.83717 0.95318 0.94909 1.44420 1.02538 1.65500 1.20222 1.19579 0.95379 1.36007 0.86697 0.90067 1.25895 0.99154 1.01304 0.99048 1.70200 1.25516 1.46616 1.16643 0.85286 0.79128 0.78109 0.78098 1.21461 1.22804 1.18759 0.94216 0.90379 0.92510 0.89231 0.90521 0.74867 0.83789 0.91384 0.88195 0.90137 0.91311 0.91385 0.90711 0.88216 0.93168 0.87368 0.92893 0.90208 0.88689 0.94155 0.92036 0.99807 0.92612 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.31 7.94 71.98 0.57 -3.73 16 2 C 0.16 6.25 3.50 44.97 0.16 6.41 16 3 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 4 C -0.12 -3.53 4.84 30.67 0.15 -3.38 16 5 C 0.16 5.44 2.42 45.02 0.11 5.55 16 6 H 0.05 2.05 7.58 -2.39 -0.02 2.04 16 7 N -0.71 -17.85 5.08 -442.40 -2.25 -20.10 16 8 C 0.51 14.02 7.32 87.65 0.64 14.66 16 9 O -0.59 -22.56 15.57 -3.03 -0.05 -22.61 16 10 C -0.13 -2.13 3.79 -10.96 -0.04 -2.18 16 11 C -0.11 -1.62 6.80 31.05 0.21 -1.41 16 12 C -0.08 -1.06 0.77 -52.03 -0.04 -1.10 16 13 C -0.11 -2.00 6.35 30.99 0.20 -1.80 16 14 C -0.14 -2.14 5.34 30.62 0.16 -1.97 16 15 C 0.06 0.92 6.78 72.07 0.49 1.41 16 16 O -0.40 -6.87 10.72 -148.98 -1.60 -8.47 16 17 C 0.05 0.64 6.78 72.07 0.49 1.13 16 18 C -0.13 -1.28 5.23 30.63 0.16 -1.12 16 19 C -0.13 -5.18 5.65 30.67 0.17 -5.01 16 20 C 0.18 9.32 5.30 86.36 0.46 9.77 16 21 N -0.60 -29.90 2.99 -675.22 -2.02 -31.92 16 22 C -0.25 -13.15 8.60 84.03 0.72 -12.42 16 23 H 0.08 4.09 6.20 -2.91 -0.02 4.07 16 24 C -0.06 -3.34 4.96 84.86 0.42 -2.92 16 25 N -0.94 -57.35 11.14 21.65 0.24 -57.11 16 26 Si 0.97 45.00 29.58 68.60 2.03 47.02 16 27 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 29 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 30 H 0.04 1.52 7.63 -2.38 -0.02 1.50 16 31 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 1.90 7.43 -2.39 -0.02 1.88 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.41 7.24 8.60 -92.71 -0.80 6.45 16 36 H 0.14 1.50 7.65 -2.38 -0.02 1.48 16 37 H 0.07 1.34 8.05 -2.39 -0.02 1.32 16 38 H 0.10 1.07 8.09 -2.39 -0.02 1.05 16 39 H 0.08 1.26 7.63 -2.39 -0.02 1.24 16 40 H 0.07 1.67 7.33 -2.39 -0.02 1.65 16 41 H 0.07 1.16 8.04 -2.39 -0.02 1.14 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 44 H 0.05 0.76 8.12 -2.39 -0.02 0.74 16 45 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.05 0.60 7.68 -2.38 -0.02 0.58 16 47 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.09 0.64 7.35 -2.39 -0.02 0.62 16 49 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.06 2.40 8.14 -2.38 -0.02 2.38 16 51 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 52 H 0.06 3.21 6.05 -2.38 -0.01 3.20 16 53 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -73.04 400.06 1.47 -71.57 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.09 Total: 19.74 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 5.03 Total: 1.88 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -4.02 Total: -109.13 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -1.64 Total: -31.08 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.02 kcal Total: -73.04 1.47 -71.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947930846.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.487 kcal (2) G-P(sol) polarization free energy of solvation -73.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds