Wall clock time and date at job start Tue Mar 31 2020 20:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.70549 * 2 1 4 4 C 1.53197 * 109.58853 * 120.35844 * 2 1 3 5 5 C 1.53042 * 109.31368 * 174.41705 * 4 2 1 6 6 H 1.09002 * 109.45424 * 58.65612 * 5 4 2 7 7 N 1.46499 * 109.44756 * 178.61964 * 5 4 2 8 8 C 1.34777 * 119.99944 * 205.06521 * 7 5 4 9 9 O 1.21283 * 120.00047 * 359.97438 * 8 7 5 10 10 C 1.50699 * 120.00033 * 180.02562 * 8 7 5 11 11 C 1.53873 * 113.59923 * 277.57998 * 10 8 7 12 12 C 1.53306 * 86.94444 * 220.33542 * 11 10 8 13 13 C 1.53325 * 87.55245 * 25.17952 * 12 11 10 14 14 C 1.52831 * 113.64495 * 139.95004 * 12 11 10 15 15 C 1.53262 * 108.87898 * 184.13904 * 14 12 11 16 16 O 1.42886 * 109.33075 * 304.68792 * 15 14 12 17 17 C 1.42904 * 114.35917 * 62.99570 * 16 15 14 18 18 C 1.52829 * 113.64289 * 270.40826 * 12 11 10 19 19 C 1.53034 * 109.54304 * 298.63837 * 5 4 2 20 20 C 1.53198 * 109.31487 * 61.36064 * 19 5 4 21 21 N 1.46924 * 108.77385 * 305.37120 * 20 19 5 22 22 C 1.36940 * 120.62605 * 233.32645 * 21 20 19 23 23 H 1.08010 * 119.99517 * 150.19760 * 22 21 20 24 24 C 1.38805 * 120.00425 * 330.20614 * 22 21 20 25 25 N 1.31622 * 119.99962 * 344.54491 * 24 22 21 26 26 Si 1.86795 * 120.00332 * 164.54948 * 24 22 21 27 27 H 1.48496 * 109.47227 * 59.99553 * 26 24 22 28 28 H 1.48505 * 109.47370 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47123 * 299.99866 * 26 24 22 30 30 H 1.09002 * 109.47249 * 180.35336 * 1 2 3 31 31 H 1.09003 * 109.46722 * 300.35333 * 1 2 3 32 32 H 1.09000 * 109.46978 * 60.35318 * 1 2 3 33 33 H 1.09001 * 109.49346 * 54.46746 * 4 2 1 34 34 H 1.08996 * 109.52034 * 294.39104 * 4 2 1 35 35 H 0.97002 * 120.00003 * 25.06431 * 7 5 4 36 36 H 1.08999 * 112.83744 * 48.84405 * 10 8 7 37 37 H 1.08994 * 113.63657 * 334.84915 * 11 10 8 38 38 H 1.09004 * 113.63666 * 105.82483 * 11 10 8 39 39 H 1.09001 * 113.63333 * 220.30445 * 13 12 11 40 40 H 1.09001 * 113.71884 * 89.34500 * 13 12 11 41 41 H 1.09003 * 109.56587 * 303.95684 * 14 12 11 42 42 H 1.08995 * 109.57224 * 64.31298 * 14 12 11 43 43 H 1.09009 * 109.49109 * 184.73119 * 15 14 12 44 44 H 1.09000 * 109.52183 * 64.66116 * 15 14 12 45 45 H 1.09004 * 109.49393 * 177.05212 * 17 16 15 46 46 H 1.08998 * 109.51543 * 56.98182 * 17 16 15 47 47 H 1.09004 * 109.57188 * 295.68078 * 18 12 11 48 48 H 1.09009 * 109.56830 * 55.92007 * 18 12 11 49 49 H 1.08997 * 109.49538 * 301.41564 * 19 5 4 50 50 H 1.08998 * 109.50118 * 181.31183 * 19 5 4 51 51 H 1.08997 * 109.59043 * 185.57604 * 20 19 5 52 52 H 1.09003 * 109.69704 * 65.22347 * 20 19 5 53 53 H 0.96995 * 120.00418 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7295 1.2454 5 6 3.5675 -0.8482 1.1700 6 1 4.0061 0.1472 1.0992 7 7 4.0649 -1.5161 2.3753 8 6 5.3287 -1.3017 2.7916 9 8 6.0544 -0.5562 2.1682 10 6 5.8406 -1.9893 4.0311 11 6 5.4463 -1.2781 5.3374 12 6 6.8603 -1.5928 5.8392 13 6 7.2999 -1.6400 4.3711 14 6 7.4972 -0.4523 6.6326 15 6 8.9363 -0.8398 6.9897 16 8 8.9314 -2.0882 7.6847 17 6 8.4396 -3.1884 6.9166 18 6 6.9713 -2.9385 6.5551 19 6 3.9569 -1.6658 -0.0636 20 6 3.4650 -0.9470 -1.3239 21 7 2.0225 -0.6995 -1.1945 22 6 1.1543 -1.1080 -2.1715 23 1 0.1398 -1.3755 -1.9149 24 6 1.5780 -1.1785 -3.4914 25 7 2.6901 -0.5778 -3.8586 26 14 0.5698 -2.1257 -4.7467 27 1 -0.7896 -1.5349 -4.8373 28 1 1.2321 -2.0484 -6.0737 29 1 0.4651 -3.5464 -4.3272 30 1 -0.3634 -1.0277 0.0063 31 1 -0.3633 0.5193 0.8868 32 1 -0.3633 0.5083 -0.8931 33 1 1.6029 -1.7254 1.2912 34 1 1.7660 -0.1674 2.1371 35 1 3.4847 -2.1127 2.8737 36 1 5.6355 -3.0598 4.0363 37 1 5.2536 -0.2125 5.2138 38 1 4.6611 -1.7899 5.8938 39 1 8.0040 -2.4426 4.1514 40 1 7.6213 -0.6753 3.9784 41 1 7.5026 0.4546 6.0278 42 1 6.9279 -0.2805 7.5460 43 1 9.3727 -0.0704 7.6270 44 1 9.5254 -0.9336 6.0774 45 1 8.5194 -4.1048 7.5014 46 1 9.0273 -3.2869 6.0039 47 1 6.3697 -2.9193 7.4639 48 1 6.6149 -3.7320 5.8981 49 1 3.4983 -2.6528 -0.0054 50 1 5.0412 -1.7696 -0.1039 51 1 3.6518 -1.5716 -2.1973 52 1 3.9901 0.0019 -1.4342 53 1 2.9860 -0.6267 -4.7810 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947930847.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:07 Heat of formation + Delta-G solvation = -77.276431 kcal Electronic energy + Delta-G solvation = -30201.665767 eV Core-core repulsion = 26265.808603 eV Total energy + Delta-G solvation = -3935.857165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.00313 -40.52982 -39.26271 -37.94168 -36.05903 -34.22040 -33.06084 -32.25734 -31.98405 -31.11642 -28.05095 -27.03130 -26.88216 -25.85669 -24.64864 -23.82642 -23.21429 -22.03873 -21.32626 -20.61414 -19.17343 -18.46559 -18.04665 -17.28037 -17.00740 -16.93192 -16.70558 -16.39392 -15.83903 -15.69137 -15.64238 -15.47344 -15.03424 -14.85968 -14.78290 -14.50778 -14.41199 -14.13000 -13.54003 -13.33926 -13.11320 -12.95969 -12.76850 -12.73438 -12.67145 -12.62356 -12.51682 -12.36916 -12.20261 -12.14120 -12.06030 -11.85521 -11.73089 -11.50535 -11.44201 -11.35035 -11.26614 -10.97955 -10.62055 -10.54730 -10.26331 -9.97202 -8.64916 -7.84294 -5.31641 1.47215 1.49406 1.55888 1.66909 2.25270 2.52387 3.00506 3.31792 3.40058 3.52260 3.55794 3.60871 3.70141 3.85641 3.99813 4.07222 4.13452 4.18831 4.26653 4.29676 4.38765 4.40678 4.51918 4.57056 4.60627 4.71472 4.74164 4.74781 4.78814 4.81281 4.83296 4.85794 4.92999 4.95519 4.99415 5.06889 5.10087 5.10838 5.14408 5.15831 5.20981 5.37712 5.38720 5.47435 5.51209 5.54704 5.61277 5.69756 5.72238 6.31364 6.42692 6.66518 7.16364 7.35650 7.88111 8.41692 9.23042 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.028067 B = 0.002146 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.385087 B =13046.743698 C =13369.737273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.158 3.842 3 H 0.008 0.992 4 C -0.116 4.116 5 C 0.161 3.839 6 H 0.050 0.950 7 N -0.709 5.709 8 C 0.514 3.486 9 O -0.591 6.591 10 C -0.129 4.129 11 C -0.102 4.102 12 C -0.075 4.075 13 C -0.113 4.113 14 C -0.137 4.137 15 C 0.059 3.941 16 O -0.403 6.403 17 C 0.055 3.945 18 C -0.126 4.126 19 C -0.128 4.128 20 C 0.184 3.816 21 N -0.602 5.602 22 C -0.249 4.249 23 H 0.081 0.919 24 C -0.058 4.058 25 N -0.942 5.942 26 Si 0.965 3.035 27 H -0.273 1.273 28 H -0.301 1.301 29 H -0.276 1.276 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.415 0.585 36 H 0.139 0.861 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.048 0.952 45 H 0.107 0.893 46 H 0.050 0.950 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.062 0.938 50 H 0.041 0.959 51 H 0.053 0.947 52 H -0.016 1.016 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 -5.990 26.070 27.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.052 3.948 3 H 0.025 0.975 4 C -0.155 4.155 5 C 0.056 3.944 6 H 0.068 0.932 7 N -0.360 5.360 8 C 0.302 3.698 9 O -0.472 6.472 10 C -0.149 4.149 11 C -0.140 4.140 12 C -0.076 4.076 13 C -0.151 4.151 14 C -0.175 4.175 15 C -0.017 4.017 16 O -0.322 6.322 17 C -0.022 4.022 18 C -0.164 4.164 19 C -0.169 4.169 20 C 0.058 3.942 21 N -0.326 5.326 22 C -0.379 4.379 23 H 0.098 0.902 24 C -0.253 4.253 25 N -0.589 5.589 26 Si 0.794 3.206 27 H -0.199 1.199 28 H -0.227 1.227 29 H -0.202 1.202 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.107 0.893 35 H 0.251 0.749 36 H 0.156 0.844 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.119 0.881 44 H 0.066 0.934 45 H 0.125 0.875 46 H 0.068 0.932 47 H 0.100 0.900 48 H 0.110 0.890 49 H 0.081 0.919 50 H 0.060 0.940 51 H 0.071 0.929 52 H 0.002 0.998 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.485 -5.469 25.667 27.033 hybrid contribution -0.316 -0.134 -1.827 1.859 sum 6.168 -5.603 23.840 25.254 Atomic orbital electron populations 1.21704 0.93777 1.01762 1.01105 1.20658 0.94787 0.92767 0.86629 0.97470 1.22160 0.92454 1.02234 0.98671 1.20613 0.94967 0.95018 0.83828 0.93161 1.46073 1.13768 1.48462 1.27655 1.21241 0.81353 0.80999 0.86177 1.90689 1.57606 1.39940 1.58918 1.22865 0.98694 1.02029 0.91353 1.22850 0.97491 1.00536 0.93097 1.21480 0.96049 0.96432 0.93594 1.22881 0.94618 1.02255 0.95340 1.22090 0.96953 0.97760 1.00689 1.22650 0.95940 0.85983 0.97136 1.87862 1.85234 1.17479 1.41651 1.22759 0.93559 0.89648 0.96195 1.21976 0.97708 0.95464 1.01211 1.22281 0.98778 0.99624 0.96177 1.20417 0.83768 0.95268 0.94787 1.44425 1.02575 1.65689 1.19939 1.19511 0.95681 1.36328 0.86414 0.90194 1.25923 0.99184 1.01008 0.99166 1.70200 1.26082 1.45912 1.16679 0.85367 0.78311 0.79079 0.77866 1.19862 1.22730 1.20240 0.92477 0.90426 0.94253 0.90487 0.89302 0.74859 0.84360 0.90731 0.88068 0.90662 0.91063 0.91102 0.90432 0.88084 0.93390 0.87466 0.93153 0.89972 0.89028 0.91908 0.94022 0.92896 0.99798 0.94435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.32 7.95 71.98 0.57 -3.75 16 2 C 0.16 6.27 3.50 44.97 0.16 6.43 16 3 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 4 C -0.12 -3.52 4.84 30.67 0.15 -3.37 16 5 C 0.16 5.45 2.42 45.02 0.11 5.55 16 6 H 0.05 2.03 7.58 -2.39 -0.02 2.01 16 7 N -0.71 -17.84 5.08 -442.41 -2.25 -20.08 16 8 C 0.51 14.03 7.32 87.66 0.64 14.67 16 9 O -0.59 -22.53 15.56 -3.04 -0.05 -22.58 16 10 C -0.13 -2.20 3.80 -10.96 -0.04 -2.24 16 11 C -0.10 -1.38 6.78 30.99 0.21 -1.17 16 12 C -0.08 -1.01 0.77 -52.08 -0.04 -1.05 16 13 C -0.11 -2.05 6.36 30.99 0.20 -1.86 16 14 C -0.14 -1.91 5.33 30.63 0.16 -1.75 16 15 C 0.06 0.86 6.78 72.07 0.49 1.35 16 16 O -0.40 -6.76 10.72 -148.98 -1.60 -8.36 16 17 C 0.05 0.66 6.78 72.07 0.49 1.15 16 18 C -0.13 -1.28 5.23 30.63 0.16 -1.12 16 19 C -0.13 -5.19 5.65 30.67 0.17 -5.02 16 20 C 0.18 9.39 5.27 86.36 0.46 9.84 16 21 N -0.60 -29.91 2.99 -675.21 -2.02 -31.93 16 22 C -0.25 -13.31 8.56 84.03 0.72 -12.59 16 23 H 0.08 4.03 6.25 -2.91 -0.02 4.01 16 24 C -0.06 -3.27 4.94 84.86 0.42 -2.85 16 25 N -0.94 -57.31 11.23 21.65 0.24 -57.07 16 26 Si 0.97 44.93 29.58 68.60 2.03 46.96 16 27 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 28 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 29 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 30 H 0.06 1.91 7.45 -2.39 -0.02 1.89 16 31 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.04 1.52 7.62 -2.39 -0.02 1.50 16 33 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.41 7.23 8.60 -92.71 -0.80 6.44 16 36 H 0.14 1.62 7.65 -2.39 -0.02 1.60 16 37 H 0.07 1.24 8.05 -2.39 -0.02 1.22 16 38 H 0.10 0.90 8.09 -2.38 -0.02 0.88 16 39 H 0.07 1.26 7.63 -2.39 -0.02 1.24 16 40 H 0.07 1.70 7.31 -2.39 -0.02 1.68 16 41 H 0.07 1.07 8.04 -2.39 -0.02 1.05 16 42 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.05 0.71 8.12 -2.39 -0.02 0.69 16 45 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 46 H 0.05 0.61 7.68 -2.39 -0.02 0.59 16 47 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 48 H 0.09 0.68 7.35 -2.38 -0.02 0.66 16 49 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.05 3.03 6.16 -2.39 -0.01 3.02 16 52 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 53 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -72.88 400.21 1.47 -71.40 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.09 Total: 19.40 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.02 Total: 2.25 kcal Atomic # 7 Polarization: -105.06 SS G_CDS: -4.02 Total: -109.08 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.64 Total: -30.94 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -72.88 1.47 -71.40 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947930847.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.874 kcal (2) G-P(sol) polarization free energy of solvation -72.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds