Wall clock time and date at job start Tue Mar 31 2020 20:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.67097 * 2 1 4 4 C 1.54889 * 110.76024 * 236.76166 * 2 1 3 5 5 C 1.54261 * 104.19767 * 203.74714 * 4 2 1 6 6 C 1.53875 * 106.60044 * 23.60837 * 5 4 2 7 7 H 1.09005 * 110.03393 * 240.66836 * 6 5 4 8 8 C 1.50697 * 110.03153 * 119.28850 * 6 5 4 9 9 O 1.21282 * 119.99677 * 242.08857 * 8 6 5 10 10 N 1.34772 * 120.00134 * 62.09664 * 8 6 5 11 11 C 1.47157 * 120.99109 * 359.97097 * 10 8 6 12 12 C 1.53292 * 108.37422 * 129.43331 * 11 10 8 13 13 O 1.42968 * 109.23501 * 52.34363 * 12 11 10 14 14 C 1.42892 * 114.20779 * 297.51739 * 13 12 11 15 15 C 1.52991 * 109.55290 * 182.23174 * 14 13 12 16 16 C 1.53187 * 109.35440 * 59.05363 * 15 14 13 17 17 N 1.46928 * 108.76887 * 54.58066 * 16 15 14 18 18 C 1.36942 * 120.64085 * 126.34114 * 17 16 15 19 19 H 1.08000 * 120.00112 * 207.66477 * 18 17 16 20 20 C 1.38813 * 119.99695 * 27.67105 * 18 17 16 21 21 N 1.31617 * 120.00270 * 17.37898 * 20 18 17 22 22 Si 1.86808 * 119.99823 * 197.38291 * 20 18 17 23 23 H 1.48496 * 109.46845 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.46925 * 119.99758 * 22 20 18 25 25 H 1.48494 * 109.46743 * 239.99491 * 22 20 18 26 26 C 1.46927 * 118.71675 * 306.32312 * 17 16 15 27 27 C 1.52995 * 109.55870 * 302.53692 * 14 13 12 28 28 C 1.47161 * 120.98732 * 180.02562 * 10 8 6 29 29 C 1.54267 * 106.64079 * 359.97438 * 6 5 4 30 30 H 1.08996 * 109.47038 * 181.77784 * 1 2 3 31 31 H 1.08996 * 109.47491 * 301.78244 * 1 2 3 32 32 H 1.09007 * 109.46642 * 61.78495 * 1 2 3 33 33 H 1.08996 * 110.48250 * 85.06708 * 4 2 1 34 34 H 1.08996 * 110.59516 * 322.48045 * 4 2 1 35 35 H 1.09003 * 110.03301 * 264.32829 * 5 4 2 36 36 H 1.08995 * 110.03478 * 142.89925 * 5 4 2 37 37 H 1.08994 * 109.67825 * 9.71576 * 11 10 8 38 38 H 1.08997 * 109.68159 * 249.15864 * 11 10 8 39 39 H 1.08992 * 109.51134 * 292.41752 * 12 11 10 40 40 H 1.09003 * 109.51058 * 172.26969 * 12 11 10 41 41 H 1.09004 * 109.49035 * 179.01703 * 15 14 13 42 42 H 1.09000 * 109.48874 * 299.08699 * 15 14 13 43 43 H 1.09006 * 109.58517 * 294.80282 * 16 15 14 44 44 H 1.08996 * 109.59129 * 174.37074 * 16 15 14 45 45 H 0.96998 * 120.00005 * 180.02562 * 21 20 18 46 46 H 1.08992 * 109.58718 * 293.87518 * 26 17 16 47 47 H 1.09007 * 109.58223 * 173.45518 * 26 17 16 48 48 H 1.08994 * 109.48988 * 60.89965 * 27 14 13 49 49 H 1.09002 * 109.48724 * 180.97174 * 27 14 13 50 50 H 1.08993 * 109.67974 * 110.72990 * 28 10 8 51 51 H 1.08996 * 109.67618 * 350.18032 * 28 10 8 52 52 H 1.09002 * 110.48295 * 95.09116 * 29 6 5 53 53 H 1.08999 * 110.48902 * 217.73605 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0198 0.0000 4 6 2.0790 -0.7939 -1.2114 5 6 3.4931 -1.2255 -0.7714 6 6 3.4930 -1.2282 0.7674 7 1 4.2332 -0.5210 1.1421 8 6 3.7956 -2.6122 1.2812 9 8 2.9746 -3.2037 1.9498 10 7 4.9786 -3.1925 0.9979 11 6 5.9902 -2.4948 0.1884 12 6 7.3281 -2.5495 0.9347 13 8 7.6186 -3.9056 1.2819 14 6 6.6691 -4.4996 2.1692 15 6 7.1103 -5.9237 2.5126 16 6 8.4946 -5.8824 3.1673 17 7 8.4459 -4.9710 4.3187 18 6 8.8525 -5.3893 5.5577 19 1 8.4312 -4.9397 6.4446 20 6 9.8062 -6.3912 5.6735 21 7 10.5637 -6.7012 4.6427 22 14 10.0146 -7.2998 7.2924 23 1 9.0497 -6.7663 8.2870 24 1 9.7611 -8.7480 7.0834 25 1 11.3991 -7.1069 7.7935 26 6 7.9531 -3.6019 4.1150 27 6 6.5747 -3.6678 3.4498 28 6 5.2965 -4.5432 1.4880 29 6 2.0793 -0.7975 1.2099 30 1 -0.3633 -1.0271 0.0319 31 1 -0.3634 0.5412 0.8735 32 1 -0.3633 0.4859 -0.9056 33 1 2.1321 -0.1556 -2.0933 34 1 1.4582 -1.6673 -1.4105 35 1 4.2327 -0.5165 -1.1434 36 1 3.7120 -2.2252 -1.1465 37 1 5.6925 -1.4563 0.0441 38 1 6.0891 -2.9868 -0.7792 39 1 7.2642 -1.9474 1.8410 40 1 8.1189 -2.1605 0.2933 41 1 6.3945 -6.3697 3.2032 42 1 7.1566 -6.5198 1.6012 43 1 9.2289 -5.5220 2.4468 44 1 8.7697 -6.8819 3.5038 45 1 11.2299 -7.4016 4.7235 46 1 8.6437 -3.0569 3.4717 47 1 7.8706 -3.0964 5.0773 48 1 6.2406 -2.6597 3.2048 49 1 5.8630 -4.1313 4.1329 50 1 5.3241 -5.2404 0.6507 51 1 4.5403 -4.8605 2.2059 52 1 1.4577 -1.6715 1.4044 53 1 2.1333 -0.1621 2.0939 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949204287.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:35 Heat of formation + Delta-G solvation = -83.906119 kcal Electronic energy + Delta-G solvation = -31478.506997 eV Core-core repulsion = 27542.362348 eV Total energy + Delta-G solvation = -3936.144649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.00425 -40.49810 -38.41705 -37.80366 -35.82099 -34.69453 -33.09154 -32.34336 -31.48745 -30.08608 -29.84912 -28.42280 -26.57433 -25.49417 -24.70294 -23.84026 -23.07771 -21.68757 -20.91567 -20.41826 -19.86159 -18.85022 -18.13394 -17.32691 -17.19669 -16.92273 -16.52987 -16.33692 -15.98612 -15.70519 -15.29669 -15.21895 -15.15180 -14.88534 -14.69519 -14.51975 -14.29438 -13.91246 -13.79123 -13.31473 -13.16395 -13.15266 -13.03069 -12.93716 -12.73288 -12.65940 -12.34877 -12.26979 -12.21552 -12.09498 -11.89065 -11.82282 -11.73053 -11.67110 -11.47634 -11.42684 -11.39206 -11.21365 -10.82350 -10.67376 -10.54277 -9.52914 -8.68320 -7.87838 -5.33059 1.44670 1.46570 1.57244 1.57470 1.85125 2.49993 2.80485 3.26138 3.37001 3.54112 3.57962 3.69733 3.75750 3.80155 3.91966 3.97583 4.13070 4.19184 4.29331 4.34153 4.38523 4.40079 4.51705 4.52745 4.60986 4.63610 4.67515 4.68536 4.70784 4.74550 4.77665 4.87744 4.89358 4.91563 4.96224 5.04050 5.05244 5.11204 5.12795 5.16426 5.23826 5.28919 5.33998 5.35787 5.41409 5.45253 5.59781 5.63304 5.78400 6.33256 6.36474 6.38241 7.10719 7.14255 7.85167 8.38069 9.18512 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026778 B = 0.002672 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.382874 B =10475.112052 C =10901.471758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 H 0.094 0.906 4 C -0.119 4.119 5 C -0.112 4.112 6 C -0.109 4.109 7 H 0.119 0.881 8 C 0.515 3.485 9 O -0.586 6.586 10 N -0.610 5.610 11 C 0.077 3.923 12 C 0.033 3.967 13 O -0.380 6.380 14 C 0.128 3.872 15 C -0.119 4.119 16 C 0.189 3.811 17 N -0.609 5.609 18 C -0.264 4.264 19 H 0.063 0.937 20 C -0.049 4.049 21 N -0.932 5.932 22 Si 0.966 3.034 23 H -0.269 1.269 24 H -0.288 1.288 25 H -0.290 1.290 26 C 0.153 3.847 27 C -0.137 4.137 28 C 0.098 3.902 29 C -0.110 4.110 30 H 0.042 0.958 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.127 0.873 38 H 0.091 0.909 39 H 0.052 0.948 40 H 0.126 0.874 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.002 0.998 44 H 0.053 0.947 45 H 0.250 0.750 46 H 0.017 0.983 47 H 0.046 0.954 48 H 0.071 0.929 49 H 0.052 0.948 50 H 0.081 0.919 51 H 0.079 0.921 52 H 0.056 0.944 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.722 15.821 -16.001 27.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.110 4.110 3 H 0.112 0.888 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.130 4.130 7 H 0.137 0.863 8 C 0.305 3.695 9 O -0.466 6.466 10 N -0.342 5.342 11 C -0.045 4.045 12 C -0.044 4.044 13 O -0.299 6.299 14 C 0.087 3.913 15 C -0.158 4.158 16 C 0.064 3.936 17 N -0.332 5.332 18 C -0.394 4.394 19 H 0.080 0.920 20 C -0.245 4.245 21 N -0.578 5.578 22 Si 0.794 3.206 23 H -0.194 1.194 24 H -0.215 1.215 25 H -0.217 1.217 26 C 0.028 3.972 27 C -0.176 4.176 28 C -0.026 4.026 29 C -0.148 4.148 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.123 0.877 36 H 0.079 0.921 37 H 0.145 0.855 38 H 0.110 0.890 39 H 0.071 0.929 40 H 0.144 0.856 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.020 0.980 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.035 0.965 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.071 0.929 50 H 0.099 0.901 51 H 0.097 0.903 52 H 0.075 0.925 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.868 15.311 -15.718 27.079 hybrid contribution 0.348 -0.928 1.304 1.638 sum -15.520 14.383 -14.414 25.603 Atomic orbital electron populations 1.21755 0.94832 1.01373 1.02244 1.22127 0.95697 0.99489 0.93657 0.88816 1.22434 0.95155 0.99707 0.98316 1.22259 0.99251 1.02635 0.90859 1.22045 1.00465 0.91793 0.98650 0.86281 1.21369 0.80268 0.89151 0.78666 1.90659 1.47993 1.66593 1.41322 1.48210 1.16409 1.16812 1.52796 1.22755 0.87158 1.00035 0.94561 1.23242 0.97844 0.83675 0.99657 1.88043 1.49538 1.27251 1.65044 1.21477 0.87582 0.93802 0.88397 1.22014 0.99473 0.93942 1.00398 1.20401 0.91769 0.94452 0.87019 1.44301 1.74769 1.08010 1.06146 1.19507 1.16254 1.18475 0.85180 0.91976 1.25780 0.95686 1.02587 1.00428 1.70201 1.22545 1.33022 1.32015 0.85230 0.77233 0.78258 0.79854 1.19373 1.21483 1.21738 1.20832 0.92689 0.86485 0.97232 1.22317 0.98454 0.99877 0.96982 1.22156 0.96337 0.84549 0.99531 1.22408 0.93857 0.99834 0.98692 0.93841 0.92540 0.91396 0.89391 0.92840 0.87691 0.92070 0.85548 0.89040 0.92940 0.85572 0.91580 0.90579 0.98018 0.92858 0.94034 0.96465 0.93509 0.91057 0.92902 0.90119 0.90287 0.92523 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.27 71.98 0.67 -1.09 16 2 C -0.09 -1.10 3.49 -9.48 -0.03 -1.13 16 3 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.12 -1.32 6.27 31.67 0.20 -1.12 16 5 C -0.11 -1.25 4.85 31.32 0.15 -1.10 16 6 C -0.11 -1.76 2.42 -10.82 -0.03 -1.79 16 7 H 0.12 1.45 7.64 -2.38 -0.02 1.43 16 8 C 0.52 13.07 6.87 87.66 0.60 13.67 16 9 O -0.59 -20.26 14.88 -3.04 -0.05 -20.31 16 10 N -0.61 -14.51 2.49 -817.36 -2.03 -16.54 16 11 C 0.08 1.26 5.49 86.35 0.47 1.74 16 12 C 0.03 0.72 6.60 72.08 0.48 1.20 16 13 O -0.38 -12.40 9.00 -148.98 -1.34 -13.74 16 14 C 0.13 4.32 0.68 -10.70 -0.01 4.32 16 15 C -0.12 -4.67 5.10 30.65 0.16 -4.51 16 16 C 0.19 9.50 5.08 86.36 0.44 9.94 16 17 N -0.61 -31.86 2.99 -699.10 -2.09 -33.96 16 18 C -0.26 -15.04 9.59 84.03 0.81 -14.23 16 19 H 0.06 3.49 7.89 -2.91 -0.02 3.46 16 20 C -0.05 -2.82 4.91 84.86 0.42 -2.40 16 21 N -0.93 -56.25 11.19 21.65 0.24 -56.01 16 22 Si 0.97 45.93 29.59 68.60 2.03 47.96 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 24 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 C 0.15 6.70 6.28 86.36 0.54 7.24 16 27 C -0.14 -4.97 4.33 30.65 0.13 -4.84 16 28 C 0.10 2.86 5.30 86.35 0.46 3.32 16 29 C -0.11 -1.94 5.60 31.70 0.18 -1.77 16 30 H 0.04 0.63 8.12 -2.39 -0.02 0.62 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.75 8.05 -2.39 -0.02 0.73 16 35 H 0.10 0.57 7.74 -2.39 -0.02 0.55 16 36 H 0.06 0.82 7.13 -2.39 -0.02 0.80 16 37 H 0.13 1.21 5.01 -2.39 -0.01 1.20 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.22 6.29 -2.39 -0.02 1.21 16 40 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.07 2.62 8.14 -2.39 -0.02 2.61 16 42 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 43 H 0.00 0.09 7.83 -2.38 -0.02 0.07 16 44 H 0.05 3.01 6.03 -2.39 -0.01 2.99 16 45 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 46 H 0.02 0.77 7.83 -2.39 -0.02 0.75 16 47 H 0.05 2.03 7.93 -2.38 -0.02 2.01 16 48 H 0.07 2.28 6.15 -2.39 -0.01 2.26 16 49 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 50 H 0.08 2.19 8.14 -2.39 -0.02 2.18 16 51 H 0.08 2.63 7.07 -2.39 -0.02 2.61 16 52 H 0.06 1.37 6.78 -2.39 -0.02 1.35 16 53 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -73.27 388.95 3.26 -70.01 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.88 Total: 15.15 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: 5.63 Total: 7.44 kcal Atomic # 7 Polarization: -102.62 SS G_CDS: -3.89 Total: -106.51 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -1.39 Total: -34.05 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -73.27 3.26 -70.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949204287.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.901 kcal (2) G-P(sol) polarization free energy of solvation -73.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds