Wall clock time and date at job start Tue Mar 31 2020 20:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.53679 * 2 1 4 4 C 1.54896 * 110.48426 * 122.60959 * 2 1 3 5 5 C 1.54885 * 102.74773 * 156.62150 * 4 2 1 6 6 C 1.54262 * 104.19895 * 322.05905 * 5 4 2 7 7 H 1.09007 * 110.03010 * 264.32539 * 6 5 4 8 8 C 1.50701 * 110.03550 * 142.89367 * 6 5 4 9 9 O 1.21282 * 119.99738 * 241.45346 * 8 6 5 10 10 N 1.34778 * 119.99706 * 61.45507 * 8 6 5 11 11 C 1.47147 * 120.99046 * 359.97438 * 10 8 6 12 12 C 1.53295 * 108.37281 * 129.40664 * 11 10 8 13 13 O 1.42970 * 109.22983 * 52.35431 * 12 11 10 14 14 C 1.42894 * 114.20879 * 297.51284 * 13 12 11 15 15 C 1.52990 * 109.55985 * 302.51521 * 14 13 12 16 16 C 1.53194 * 109.34645 * 300.95891 * 15 14 13 17 17 N 1.46936 * 108.77284 * 305.42695 * 16 15 14 18 18 C 1.36943 * 120.63816 * 233.64764 * 17 16 15 19 19 H 1.07998 * 119.99756 * 27.70733 * 18 17 16 20 20 C 1.38816 * 119.99613 * 207.70548 * 18 17 16 21 21 N 1.31617 * 120.00217 * 17.36425 * 20 18 17 22 22 Si 1.86796 * 119.99666 * 197.36541 * 20 18 17 23 23 H 1.48501 * 109.47226 * 90.00217 * 22 20 18 24 24 H 1.48497 * 109.47213 * 210.00080 * 22 20 18 25 25 H 1.48500 * 109.47314 * 329.99852 * 22 20 18 26 26 C 1.46926 * 118.71909 * 53.67434 * 17 16 15 27 27 C 1.52990 * 109.55154 * 182.21396 * 14 13 12 28 28 C 1.47151 * 120.98341 * 179.72772 * 10 8 6 29 29 C 1.53872 * 106.59761 * 23.60856 * 6 5 4 30 30 H 1.08994 * 109.47236 * 298.84202 * 1 2 3 31 31 H 1.08993 * 109.46862 * 58.84812 * 1 2 3 32 32 H 1.09005 * 109.47174 * 178.83978 * 1 2 3 33 33 H 1.09000 * 110.75302 * 38.30457 * 4 2 1 34 34 H 1.08999 * 110.91161 * 275.01133 * 4 2 1 35 35 H 1.09003 * 110.48735 * 80.73566 * 5 4 2 36 36 H 1.09004 * 110.48499 * 203.37506 * 5 4 2 37 37 H 1.08999 * 109.69235 * 249.13150 * 11 10 8 38 38 H 1.09009 * 109.68401 * 9.68682 * 11 10 8 39 39 H 1.09001 * 109.51213 * 172.28082 * 12 11 10 40 40 H 1.09003 * 109.51412 * 292.42921 * 12 11 10 41 41 H 1.09002 * 109.49146 * 60.92211 * 15 14 13 42 42 H 1.09003 * 109.49044 * 180.99323 * 15 14 13 43 43 H 1.09003 * 109.58477 * 185.64473 * 16 15 14 44 44 H 1.08992 * 109.70436 * 65.28268 * 16 15 14 45 45 H 0.96995 * 120.00017 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.58757 * 186.53706 * 26 17 16 47 47 H 1.09004 * 109.58795 * 66.11119 * 26 17 16 48 48 H 1.08993 * 109.49751 * 179.00973 * 27 14 13 49 49 H 1.09006 * 109.49094 * 299.05889 * 27 14 13 50 50 H 1.09004 * 109.67657 * 350.19504 * 28 10 8 51 51 H 1.08996 * 109.68463 * 110.74204 * 28 10 8 52 52 H 1.08998 * 110.03202 * 240.71772 * 29 6 5 53 53 H 1.09002 * 110.07253 * 119.30792 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0721 -0.7820 1.2223 5 6 3.4907 -1.1979 0.7602 6 6 3.3166 -1.5405 -0.7338 7 1 3.1693 -2.6137 -0.8561 8 6 4.5282 -1.0934 -1.5106 9 8 4.4136 -0.2647 -2.3887 10 7 5.7389 -1.6144 -1.2294 11 6 5.9029 -2.6207 -0.1683 12 6 6.6842 -3.8072 -0.7442 13 8 7.8849 -3.3284 -1.3550 14 6 7.6696 -2.4487 -2.4603 15 6 6.8210 -3.1551 -3.5194 16 6 7.5423 -4.4243 -3.9839 17 7 8.8931 -4.0624 -4.4347 18 6 9.3341 -4.4255 -5.6793 19 1 8.6269 -4.5634 -6.4838 20 6 10.6902 -4.6163 -5.9068 21 7 11.5100 -4.7880 -4.8916 22 14 11.3513 -4.6294 -7.6538 23 1 11.7325 -3.2496 -8.0491 24 1 12.5434 -5.5119 -7.7253 25 1 10.3036 -5.1369 -8.5758 26 6 9.7618 -3.3040 -3.5242 27 6 9.0163 -2.0470 -3.0648 28 6 6.9353 -1.1979 -1.9781 29 6 2.0700 -0.7789 -1.2171 30 1 -0.3633 0.4957 0.9001 31 1 -0.3633 0.5316 -0.8794 32 1 -0.3634 -1.0275 -0.0208 33 1 1.4580 -1.6600 1.4224 34 1 2.1249 -0.1407 2.1021 35 1 4.1898 -0.3707 0.8829 36 1 3.8315 -2.0721 1.3149 37 1 6.4547 -2.1879 0.6661 38 1 4.9238 -2.9568 0.1733 39 1 6.9355 -4.5013 0.0578 40 1 6.0745 -4.3170 -1.4902 41 1 5.8543 -3.4217 -3.0923 42 1 6.6723 -2.4894 -4.3696 43 1 6.9910 -4.8769 -4.8081 44 1 7.6102 -5.1317 -3.1575 45 1 12.4575 -4.9217 -5.0505 46 1 10.6753 -3.0173 -4.0450 47 1 10.0095 -3.9187 -2.6589 48 1 8.8504 -1.3901 -3.9186 49 1 9.6106 -1.5252 -2.3146 50 1 6.6396 -0.5938 -2.8359 51 1 7.5913 -0.6181 -1.3289 52 1 1.3178 -1.4823 -1.5739 53 1 2.3405 -0.0859 -2.0138 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949204288.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:39 Heat of formation + Delta-G solvation = -82.506057 kcal Electronic energy + Delta-G solvation = -31473.617361 eV Core-core repulsion = 27537.533422 eV Total energy + Delta-G solvation = -3936.083938 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.01601 -40.51597 -38.43190 -37.80665 -35.82463 -34.70448 -33.10123 -32.33988 -31.48918 -30.09018 -29.84403 -28.41880 -26.54114 -25.47211 -24.70922 -23.84284 -23.06417 -21.72431 -20.97651 -20.40291 -19.71159 -18.87418 -18.51625 -17.32611 -16.96339 -16.83674 -16.60653 -16.15759 -16.09780 -15.65682 -15.38381 -15.23090 -15.16795 -14.93623 -14.71999 -14.54371 -14.31257 -13.79720 -13.76666 -13.31535 -13.18440 -13.13213 -13.04694 -12.80811 -12.66230 -12.63759 -12.60533 -12.26409 -12.19297 -12.10306 -11.88136 -11.76555 -11.69849 -11.64600 -11.54232 -11.44563 -11.35657 -11.16708 -10.82331 -10.68656 -10.53706 -9.53111 -8.68411 -7.87671 -5.33059 1.45451 1.47253 1.55867 1.57076 1.85000 2.50105 2.80387 3.26137 3.37412 3.56501 3.58783 3.70563 3.75133 3.80368 3.92004 3.97456 4.08984 4.19989 4.29616 4.33563 4.37097 4.40074 4.51379 4.55134 4.59370 4.60759 4.67539 4.68398 4.73511 4.74663 4.77120 4.89406 4.91627 4.95670 4.98241 5.03704 5.05079 5.10436 5.11289 5.16017 5.27021 5.27787 5.33449 5.36737 5.45244 5.48431 5.57051 5.63188 5.78446 6.33260 6.36430 6.38258 7.10491 7.14308 7.85226 8.38152 9.18529 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026909 B = 0.002666 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.293630 B =10500.592366 C =10918.248560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 H 0.058 0.942 4 C -0.112 4.112 5 C -0.112 4.112 6 C -0.108 4.108 7 H 0.119 0.881 8 C 0.515 3.485 9 O -0.585 6.585 10 N -0.608 5.608 11 C 0.075 3.925 12 C 0.032 3.968 13 O -0.380 6.380 14 C 0.128 3.872 15 C -0.137 4.137 16 C 0.153 3.847 17 N -0.609 5.609 18 C -0.265 4.265 19 H 0.063 0.937 20 C -0.049 4.049 21 N -0.932 5.932 22 Si 0.967 3.033 23 H -0.285 1.285 24 H -0.293 1.293 25 H -0.270 1.270 26 C 0.189 3.811 27 C -0.119 4.119 28 C 0.097 3.903 29 C -0.116 4.116 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.052 0.948 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.046 0.954 44 H 0.017 0.983 45 H 0.251 0.749 46 H 0.053 0.947 47 H 0.002 0.998 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.079 0.921 51 H 0.080 0.920 52 H 0.079 0.921 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.281 6.528 17.272 27.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.077 0.923 4 C -0.150 4.150 5 C -0.150 4.150 6 C -0.129 4.129 7 H 0.137 0.863 8 C 0.305 3.695 9 O -0.465 6.465 10 N -0.341 5.341 11 C -0.047 4.047 12 C -0.045 4.045 13 O -0.299 6.299 14 C 0.087 3.913 15 C -0.177 4.177 16 C 0.028 3.972 17 N -0.332 5.332 18 C -0.395 4.395 19 H 0.080 0.920 20 C -0.244 4.244 21 N -0.578 5.578 22 Si 0.795 3.205 23 H -0.212 1.212 24 H -0.219 1.219 25 H -0.195 1.195 26 C 0.064 3.936 27 C -0.158 4.158 28 C -0.026 4.026 29 C -0.154 4.154 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.105 0.895 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.071 0.929 41 H 0.089 0.911 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.035 0.965 45 H 0.060 0.940 46 H 0.071 0.929 47 H 0.020 0.980 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.097 0.903 51 H 0.098 0.902 52 H 0.097 0.903 53 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.005 6.861 16.863 27.048 hybrid contribution 0.774 0.021 -1.457 1.650 sum -19.231 6.882 15.406 25.584 Atomic orbital electron populations 1.21773 0.93876 1.02383 1.01786 1.21963 0.96366 0.98667 0.94663 0.92346 1.22573 0.94894 1.00504 0.96994 1.22506 0.98543 1.02474 0.91469 1.22018 0.91420 1.02815 0.96623 0.86313 1.21337 0.84926 0.80330 0.82877 1.90648 1.85691 1.35470 1.34720 1.48180 1.06824 1.42455 1.36618 1.22825 1.03705 0.88512 0.89675 1.23252 0.87001 0.96040 0.98162 1.88045 1.30904 1.64762 1.46159 1.21386 0.95092 0.88779 0.85998 1.22327 0.98310 0.98706 0.98319 1.20831 0.85957 0.93989 0.96449 1.44296 1.12081 1.62265 1.14576 1.19486 0.91747 1.40996 0.87302 0.91962 1.25781 0.97601 1.00305 1.00761 1.70193 1.03382 1.53221 1.30963 0.85278 0.77603 0.77318 0.80313 1.21185 1.21930 1.19510 1.20400 0.92788 0.89338 0.91110 1.22013 0.95055 0.99205 0.99543 1.22065 0.86702 0.96515 0.97313 1.22239 0.95283 0.99225 0.98659 0.91799 0.93358 0.91689 0.89486 0.90467 0.92385 0.87897 0.88992 0.85381 0.85550 0.92941 0.91052 0.92890 0.93541 0.96462 0.94028 0.92867 0.98001 0.91601 0.90574 0.90289 0.90156 0.90281 0.92577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.12 71.98 0.66 -0.90 16 2 C -0.10 -1.36 3.46 -9.72 -0.03 -1.40 16 3 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.11 -1.08 6.33 31.89 0.20 -0.87 16 5 C -0.11 -1.25 5.09 31.67 0.16 -1.09 16 6 C -0.11 -1.76 2.42 -10.82 -0.03 -1.78 16 7 H 0.12 1.46 7.67 -2.38 -0.02 1.44 16 8 C 0.51 13.06 6.96 87.66 0.61 13.67 16 9 O -0.59 -20.23 14.68 -3.04 -0.04 -20.28 16 10 N -0.61 -14.46 2.53 -818.21 -2.07 -16.53 16 11 C 0.07 1.22 5.73 86.35 0.49 1.71 16 12 C 0.03 0.71 6.60 72.08 0.48 1.19 16 13 O -0.38 -12.38 9.01 -148.98 -1.34 -13.72 16 14 C 0.13 4.32 0.68 -10.85 -0.01 4.32 16 15 C -0.14 -4.98 4.32 30.66 0.13 -4.85 16 16 C 0.15 6.70 6.28 86.36 0.54 7.24 16 17 N -0.61 -31.86 2.99 -699.07 -2.09 -33.95 16 18 C -0.27 -15.10 9.59 84.03 0.81 -14.30 16 19 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 20 C -0.05 -2.80 4.91 84.86 0.42 -2.38 16 21 N -0.93 -56.24 11.19 21.65 0.24 -56.00 16 22 Si 0.97 45.94 29.59 68.60 2.03 47.97 16 23 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 24 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 C 0.19 9.51 5.08 86.36 0.44 9.94 16 27 C -0.12 -4.67 5.10 30.66 0.16 -4.51 16 28 C 0.10 2.86 5.26 86.20 0.45 3.31 16 29 C -0.12 -2.07 5.97 31.32 0.19 -1.88 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.61 8.11 -2.38 -0.02 0.59 16 33 H 0.09 0.60 8.06 -2.39 -0.02 0.58 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.06 0.83 7.85 -2.39 -0.02 0.81 16 36 H 0.10 0.61 6.68 -2.39 -0.02 0.59 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.13 1.21 4.54 -2.38 -0.01 1.20 16 39 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.05 1.22 6.29 -2.39 -0.02 1.20 16 41 H 0.07 2.28 6.16 -2.39 -0.01 2.26 16 42 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.05 2.01 7.93 -2.39 -0.02 2.00 16 44 H 0.02 0.77 7.83 -2.39 -0.02 0.75 16 45 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 46 H 0.05 3.00 6.03 -2.39 -0.01 2.99 16 47 H 0.00 0.10 7.83 -2.39 -0.02 0.08 16 48 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 49 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 50 H 0.08 2.63 7.07 -2.38 -0.02 2.61 16 51 H 0.08 2.19 8.13 -2.39 -0.02 2.17 16 52 H 0.08 1.21 7.81 -2.39 -0.02 1.19 16 53 H 0.06 1.40 6.40 -2.39 -0.02 1.39 16 Total: -1.00 -73.21 388.06 3.27 -69.94 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.88 Total: 15.15 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 5.67 Total: 7.42 kcal Atomic # 7 Polarization: -102.56 SS G_CDS: -3.92 Total: -106.48 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -1.39 Total: -34.00 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 2.03 Total: 47.97 kcal Total: -73.21 3.27 -69.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949204288.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.565 kcal (2) G-P(sol) polarization free energy of solvation -73.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds