Wall clock time and date at job start Tue Mar 31 2020 20:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 110.01121 * 2 1 4 4 C 1.53866 * 110.07417 * 121.41947 * 2 1 3 5 5 C 1.54466 * 106.68899 * 119.46698 * 4 2 1 6 6 C 1.54896 * 104.09529 * 23.34036 * 5 4 2 7 7 H 1.08998 * 110.75372 * 80.71100 * 6 5 4 8 8 C 1.50698 * 110.75360 * 203.89377 * 6 5 4 9 9 O 1.21289 * 119.99673 * 116.07001 * 8 6 5 10 10 N 1.34778 * 120.00290 * 296.06592 * 8 6 5 11 11 C 1.47151 * 120.98869 * 359.97438 * 10 8 6 12 12 C 1.53286 * 108.38506 * 230.60867 * 11 10 8 13 13 O 1.42972 * 109.23129 * 307.66529 * 12 11 10 14 14 C 1.42897 * 114.19728 * 62.48829 * 13 12 11 15 15 C 1.52982 * 109.55953 * 57.43777 * 14 13 12 16 16 C 1.53199 * 109.35196 * 59.05555 * 15 14 13 17 17 N 1.46929 * 108.77096 * 54.57855 * 16 15 14 18 18 C 1.36934 * 120.64732 * 126.32097 * 17 16 15 19 19 H 1.07997 * 119.99911 * 332.24951 * 18 17 16 20 20 C 1.38808 * 120.00063 * 152.25328 * 18 17 16 21 21 N 1.31617 * 120.00172 * 335.23557 * 20 18 17 22 22 Si 1.86805 * 120.00007 * 155.52174 * 20 18 17 23 23 H 1.48499 * 109.46966 * 179.72609 * 22 20 18 24 24 H 1.48503 * 109.46550 * 299.71838 * 22 20 18 25 25 H 1.48498 * 109.47378 * 59.72032 * 22 20 18 26 26 C 1.46936 * 118.71042 * 306.58915 * 17 16 15 27 27 C 1.52728 * 109.02372 * 53.36404 * 26 17 16 28 28 C 1.47148 * 120.98795 * 180.02562 * 10 8 6 29 29 C 1.54264 * 110.03194 * 238.61233 * 2 1 3 30 30 H 1.09001 * 109.46715 * 181.39538 * 1 2 3 31 31 H 1.09004 * 109.46963 * 301.38434 * 1 2 3 32 32 H 1.08996 * 109.47557 * 61.38893 * 1 2 3 33 33 H 1.09004 * 110.03422 * 238.59594 * 4 2 1 34 34 H 1.08997 * 110.03516 * 359.97356 * 4 2 1 35 35 H 1.08998 * 110.40438 * 264.76032 * 5 4 2 36 36 H 1.08997 * 110.66182 * 142.04683 * 5 4 2 37 37 H 1.09003 * 109.67850 * 110.88109 * 11 10 8 38 38 H 1.09007 * 109.68016 * 350.33504 * 11 10 8 39 39 H 1.08994 * 109.51631 * 187.74139 * 12 11 10 40 40 H 1.09007 * 109.55252 * 67.61493 * 12 11 10 41 41 H 1.09002 * 109.49235 * 299.09086 * 15 14 13 42 42 H 1.09000 * 109.49673 * 179.01842 * 15 14 13 43 43 H 1.09001 * 109.58426 * 294.79119 * 16 15 14 44 44 H 1.09003 * 109.58637 * 174.36270 * 16 15 14 45 45 H 0.97003 * 120.00236 * 354.52870 * 21 20 18 46 46 H 1.08998 * 109.59255 * 173.20120 * 26 17 16 47 47 H 1.08998 * 109.58544 * 293.63098 * 26 17 16 48 48 H 1.09002 * 109.56253 * 185.61094 * 27 26 17 49 49 H 1.08995 * 109.34212 * 65.58308 * 27 26 17 50 50 H 1.09004 * 109.68459 * 9.76207 * 28 10 8 51 51 H 1.08999 * 109.68152 * 249.21712 * 28 10 8 52 52 H 1.08997 * 110.48573 * 98.37508 * 29 2 1 53 53 H 1.09001 * 110.48555 * 335.73571 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0582 -0.7534 1.2333 5 6 2.8941 -1.9397 0.7041 6 6 3.3144 -1.4993 -0.7202 7 1 4.1721 -0.8278 -0.6795 8 6 3.6175 -2.6978 -1.5820 9 8 2.9363 -2.9305 -2.5582 10 7 4.6455 -3.5109 -1.2682 11 6 5.4864 -3.2487 -0.0894 12 6 6.9554 -3.2842 -0.5258 13 8 7.2089 -4.5041 -1.2270 14 6 6.4555 -4.6546 -2.4318 15 6 6.7401 -3.4759 -3.3646 16 6 8.2388 -3.4275 -3.6787 17 7 8.6525 -4.7329 -4.2113 18 6 9.3091 -4.8215 -5.4097 19 1 9.1506 -4.0702 -6.1692 20 6 10.1785 -5.8770 -5.6484 21 7 10.7525 -6.4978 -4.6398 22 14 10.5398 -6.4112 -7.4016 23 1 11.4968 -7.5466 -7.3858 24 1 9.2781 -6.8365 -8.0594 25 1 11.1315 -5.2754 -8.1533 26 6 8.3428 -5.9419 -3.4359 27 6 6.8484 -5.9625 -3.1216 28 6 4.9611 -4.6867 -2.0948 29 6 2.0585 -0.7548 -1.2372 30 1 -0.3633 -1.0274 0.0250 31 1 -0.3633 0.5352 0.8773 32 1 -0.3634 0.4921 -0.9021 33 1 2.6876 -0.0948 1.8319 34 1 1.2246 -1.1190 1.8328 35 1 2.2861 -2.8432 0.6601 36 1 3.7728 -2.0999 1.3288 37 1 5.3090 -4.0145 0.6657 38 1 5.2486 -2.2668 0.3200 39 1 7.5978 -3.2293 0.3530 40 1 7.1619 -2.4379 -1.1811 41 1 6.4402 -2.5472 -2.8791 42 1 6.1784 -3.6006 -4.2903 43 1 8.7963 -3.2112 -2.7674 44 1 8.4318 -2.6524 -4.4204 45 1 10.6314 -6.1687 -3.7354 46 1 8.6046 -6.8260 -4.0173 47 1 8.9090 -5.9337 -2.5046 48 1 6.6254 -6.8021 -2.4632 49 1 6.2858 -6.0678 -4.0492 50 1 4.3768 -4.6565 -3.0144 51 1 4.7294 -5.5970 -1.5419 52 1 2.3289 -0.0526 -2.0258 53 1 1.3146 -1.4658 -1.5968 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949204290.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:48 Heat of formation + Delta-G solvation = -87.037281 kcal Electronic energy + Delta-G solvation = -31498.361588 eV Core-core repulsion = 27562.081161 eV Total energy + Delta-G solvation = -3936.280427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.04177 -40.55195 -38.58156 -38.02694 -35.88628 -34.87077 -33.09980 -32.37725 -31.52061 -30.10442 -29.85380 -28.38636 -26.53140 -25.48568 -24.75606 -23.99599 -23.22261 -21.86858 -20.60746 -20.51587 -19.93873 -19.46322 -18.33044 -17.35811 -17.18029 -16.87210 -16.62525 -16.22856 -15.95267 -15.81716 -15.47241 -15.33883 -15.23981 -15.07705 -14.71808 -14.62674 -14.22189 -13.84572 -13.76376 -13.66024 -13.35303 -13.24618 -13.09341 -12.88109 -12.72738 -12.63236 -12.52103 -12.14995 -12.11874 -11.99126 -11.93775 -11.87733 -11.84459 -11.64378 -11.56588 -11.39827 -11.27043 -11.19766 -10.91763 -10.73888 -10.47890 -9.58704 -8.93521 -8.26168 -5.41153 1.52584 1.56917 1.64505 1.80685 1.83722 2.63747 2.71980 3.20817 3.30703 3.44408 3.51030 3.63933 3.68799 3.73857 3.79962 3.93418 4.06405 4.12787 4.23329 4.26357 4.30153 4.33696 4.43668 4.46510 4.50058 4.53640 4.56860 4.58934 4.67222 4.68676 4.74661 4.77532 4.78298 4.84776 4.88509 4.93091 4.98145 5.00535 5.12036 5.12444 5.14416 5.15778 5.23017 5.30918 5.35716 5.37765 5.44072 5.56735 5.80990 6.24931 6.30558 6.38432 7.04947 7.06401 7.76885 8.22232 8.98908 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026839 B = 0.002672 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.025542 B =10478.433035 C =10875.120181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.084 0.916 4 C -0.115 4.115 5 C -0.111 4.111 6 C -0.111 4.111 7 H 0.122 0.878 8 C 0.517 3.483 9 O -0.586 6.586 10 N -0.609 5.609 11 C 0.075 3.925 12 C 0.032 3.968 13 O -0.380 6.380 14 C 0.128 3.872 15 C -0.137 4.137 16 C 0.156 3.844 17 N -0.616 5.616 18 C -0.358 4.358 19 H 0.046 0.954 20 C -0.074 4.074 21 N -0.939 5.939 22 Si 1.114 2.886 23 H -0.289 1.289 24 H -0.281 1.281 25 H -0.276 1.276 26 C 0.168 3.832 27 C -0.114 4.114 28 C 0.098 3.902 29 C -0.102 4.102 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.050 0.950 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.019 0.981 44 H 0.043 0.957 45 H 0.255 0.745 46 H 0.044 0.956 47 H 0.009 0.991 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.079 0.921 51 H 0.083 0.917 52 H 0.062 0.938 53 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.075 12.732 17.001 27.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.102 0.898 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.132 4.132 7 H 0.140 0.860 8 C 0.308 3.692 9 O -0.466 6.466 10 N -0.342 5.342 11 C -0.047 4.047 12 C -0.044 4.044 13 O -0.299 6.299 14 C 0.088 3.912 15 C -0.176 4.176 16 C 0.030 3.970 17 N -0.341 5.341 18 C -0.488 4.488 19 H 0.064 0.936 20 C -0.270 4.270 21 N -0.581 5.581 22 Si 0.939 3.061 23 H -0.215 1.215 24 H -0.207 1.207 25 H -0.202 1.202 26 C 0.043 3.957 27 C -0.154 4.154 28 C -0.026 4.026 29 C -0.141 4.141 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.146 0.854 39 H 0.146 0.854 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.027 0.973 48 H 0.100 0.900 49 H 0.085 0.915 50 H 0.097 0.903 51 H 0.101 0.899 52 H 0.080 0.920 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.500 11.381 15.627 26.076 hybrid contribution -0.642 1.077 0.315 1.293 sum -18.141 12.458 15.942 27.175 Atomic orbital electron populations 1.21880 0.94803 1.01528 1.02025 1.21763 0.96026 0.99759 0.93757 0.89766 1.22257 0.99740 0.96281 0.96974 1.22529 1.01061 0.98776 0.92460 1.22375 1.01052 0.93721 0.96012 0.86013 1.21294 0.78751 0.84243 0.84947 1.90675 1.50755 1.74613 1.30552 1.48214 1.31009 1.26642 1.28313 1.22819 0.89601 1.05224 0.87043 1.23261 0.96373 0.87216 0.97598 1.88028 1.65571 1.40128 1.36163 1.21438 0.89602 0.95431 0.84738 1.22309 0.97787 0.98487 0.99029 1.20815 0.92783 0.87525 0.95841 1.44312 1.66430 1.01154 1.22171 1.20191 1.22312 1.14175 0.92121 0.93582 1.27198 0.93399 0.98068 1.08367 1.70888 1.41360 1.45244 1.00597 0.82869 0.76268 0.76179 0.70818 1.21517 1.20716 1.20216 1.20528 0.92567 0.89569 0.93063 1.21841 0.98070 0.95939 0.99507 1.22122 0.94943 0.88869 0.96621 1.22302 0.95468 0.98325 0.97965 0.93396 0.91361 0.93086 0.89635 0.90872 0.92486 0.88294 0.88812 0.85380 0.85399 0.93035 0.90907 0.93041 0.96323 0.93890 0.93550 0.93779 0.97286 0.90008 0.91461 0.90283 0.89858 0.91966 0.92663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.84 71.98 0.64 -1.06 16 2 C -0.09 -1.10 3.50 -10.07 -0.04 -1.14 16 3 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 4 C -0.12 -1.02 6.46 31.38 0.20 -0.82 16 5 C -0.11 -1.23 5.51 31.74 0.17 -1.05 16 6 C -0.11 -1.79 2.30 -10.25 -0.02 -1.82 16 7 H 0.12 1.50 7.65 -2.39 -0.02 1.48 16 8 C 0.52 13.02 7.09 87.66 0.62 13.64 16 9 O -0.59 -20.22 15.22 -3.06 -0.05 -20.26 16 10 N -0.61 -14.25 2.52 -817.49 -2.06 -16.31 16 11 C 0.07 1.19 5.63 86.35 0.49 1.67 16 12 C 0.03 0.69 6.60 72.08 0.48 1.17 16 13 O -0.38 -12.05 9.01 -148.98 -1.34 -13.39 16 14 C 0.13 4.28 0.68 -10.73 -0.01 4.27 16 15 C -0.14 -4.99 4.32 30.66 0.13 -4.85 16 16 C 0.16 6.87 6.29 86.36 0.54 7.41 16 17 N -0.62 -32.31 2.85 -699.95 -2.00 -34.30 16 18 C -0.36 -20.83 9.49 84.03 0.80 -20.03 16 19 H 0.05 2.70 7.94 -2.91 -0.02 2.67 16 20 C -0.07 -4.31 4.69 84.86 0.40 -3.91 16 21 N -0.94 -58.49 12.42 21.65 0.27 -58.22 16 22 Si 1.11 52.23 29.98 68.60 2.06 54.29 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 26 C 0.17 8.28 4.43 86.21 0.38 8.67 16 27 C -0.11 -4.41 5.09 30.50 0.16 -4.26 16 28 C 0.10 2.82 5.29 86.33 0.46 3.28 16 29 C -0.10 -1.81 5.42 31.67 0.17 -1.64 16 30 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.07 0.62 7.67 -2.39 -0.02 0.60 16 35 H 0.06 0.82 8.04 -2.39 -0.02 0.80 16 36 H 0.10 0.64 6.25 -2.39 -0.01 0.63 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.13 1.16 4.68 -2.38 -0.01 1.15 16 39 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 1.18 6.29 -2.38 -0.01 1.17 16 41 H 0.07 2.33 6.15 -2.39 -0.01 2.32 16 42 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.02 0.83 7.83 -2.39 -0.02 0.81 16 44 H 0.04 1.92 7.93 -2.39 -0.02 1.90 16 45 H 0.25 16.23 6.69 -92.71 -0.62 15.61 16 46 H 0.04 2.44 6.31 -2.39 -0.02 2.43 16 47 H 0.01 0.47 7.55 -2.39 -0.02 0.45 16 48 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 49 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 50 H 0.08 2.61 7.07 -2.39 -0.02 2.59 16 51 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 52 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.05 1.26 7.19 -2.39 -0.02 1.24 16 Total: -1.00 -75.31 387.91 3.47 -71.84 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 1.03 Total: 16.84 kcal Atomic # 6 Polarization: -6.05 SS G_CDS: 5.57 Total: -0.48 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -3.79 Total: -108.83 kcal Atomic # 8 Polarization: -32.27 SS G_CDS: -1.39 Total: -33.65 kcal Atomic # 14 Polarization: 52.23 SS G_CDS: 2.06 Total: 54.29 kcal Total: -75.31 3.47 -71.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949204290.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.198 kcal (2) G-P(sol) polarization free energy of solvation -75.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds