Wall clock time and date at job start Tue Mar 31 2020 20:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 110.43658 * 2 1 4 4 C 1.54895 * 110.48661 * 237.32532 * 2 1 3 5 5 C 1.54889 * 102.75001 * 203.37819 * 4 2 1 6 6 C 1.54268 * 104.19466 * 37.94163 * 5 4 2 7 7 H 1.08997 * 110.07517 * 95.69641 * 6 5 4 8 8 C 1.50701 * 110.02724 * 217.10703 * 6 5 4 9 9 O 1.21281 * 120.00220 * 93.39634 * 8 6 5 10 10 N 1.34775 * 119.99853 * 273.38302 * 8 6 5 11 11 C 1.46931 * 120.64195 * 174.08019 * 10 8 6 12 12 C 1.53182 * 108.77683 * 233.66009 * 11 10 8 13 13 C 1.53000 * 109.34939 * 305.42735 * 12 11 10 14 14 C 1.52979 * 109.63674 * 61.20606 * 13 12 11 15 15 C 1.46928 * 120.64321 * 354.06540 * 10 8 6 16 16 C 1.53260 * 109.35672 * 181.13759 * 13 12 11 17 17 N 1.47158 * 108.40396 * 172.10025 * 16 13 12 18 18 C 1.36937 * 120.98314 * 129.51862 * 17 16 13 19 19 H 1.08005 * 119.99907 * 216.96184 * 18 17 16 20 20 C 1.38813 * 120.00045 * 36.97341 * 18 17 16 21 21 N 1.31612 * 120.00146 * 20.65605 * 20 18 17 22 22 Si 1.86807 * 119.99820 * 200.65739 * 20 18 17 23 23 H 1.48496 * 109.46891 * 89.99901 * 22 20 18 24 24 H 1.48500 * 109.46995 * 329.99928 * 22 20 18 25 25 H 1.48496 * 109.47107 * 209.99817 * 22 20 18 26 26 C 1.47147 * 118.02322 * 309.79494 * 17 16 13 27 27 C 1.52844 * 108.62410 * 50.25199 * 26 17 16 28 28 O 1.42888 * 109.55216 * 300.93618 * 13 12 11 29 29 C 1.53877 * 106.59905 * 336.38961 * 6 5 4 30 30 H 1.08991 * 109.47028 * 297.45109 * 1 2 3 31 31 H 1.08999 * 109.47441 * 57.45407 * 1 2 3 32 32 H 1.09004 * 109.47284 * 177.45093 * 1 2 3 33 33 H 1.09004 * 110.75715 * 321.69236 * 4 2 1 34 34 H 1.09004 * 110.75903 * 85.05966 * 4 2 1 35 35 H 1.09000 * 110.48613 * 279.26460 * 5 4 2 36 36 H 1.09001 * 110.48772 * 156.62083 * 5 4 2 37 37 H 1.08993 * 109.58608 * 113.86894 * 11 10 8 38 38 H 1.09001 * 109.58251 * 353.44602 * 11 10 8 39 39 H 1.08999 * 109.49284 * 185.46532 * 12 11 10 40 40 H 1.09005 * 109.49374 * 65.38779 * 12 11 10 41 41 H 1.09005 * 109.49177 * 58.75729 * 14 13 12 42 42 H 1.08993 * 109.49203 * 178.83360 * 14 13 12 43 43 H 1.08996 * 109.58651 * 246.12808 * 15 10 8 44 44 H 1.08998 * 109.58635 * 6.41196 * 15 10 8 45 45 H 1.09001 * 109.67961 * 52.37825 * 16 13 12 46 46 H 1.08996 * 109.71068 * 291.84893 * 16 13 12 47 47 H 0.97006 * 120.00030 * 5.97670 * 21 20 18 48 48 H 1.09002 * 109.68276 * 170.03431 * 26 17 16 49 49 H 1.09002 * 109.68573 * 290.58793 * 26 17 16 50 50 H 1.08990 * 109.59045 * 187.89257 * 27 26 17 51 51 H 1.09007 * 109.35034 * 67.79511 * 27 26 17 52 52 H 1.08997 * 110.03241 * 119.28409 * 29 6 5 53 53 H 1.08996 * 110.02948 * 240.67187 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7833 -1.2214 5 6 3.4907 -1.1988 -0.7588 6 6 3.3166 -1.5397 0.7357 7 1 3.1696 -2.6125 0.8600 8 6 4.5281 -1.0916 1.5118 9 8 4.5415 0.0013 2.0374 10 7 5.5967 -1.9055 1.6221 11 6 6.8326 -1.4360 2.2632 12 6 8.0044 -1.6681 1.3042 13 6 8.0327 -3.1393 0.8850 14 6 6.7340 -3.4916 0.1573 15 6 5.5482 -3.2795 1.1038 16 6 9.2218 -3.3777 -0.0520 17 7 9.3434 -4.8249 -0.2894 18 6 9.4420 -5.3249 -1.5604 19 1 8.9604 -6.2583 -1.8124 20 6 10.1611 -4.6324 -2.5248 21 7 11.0651 -3.7472 -2.1623 22 14 9.8457 -4.9569 -4.3373 23 1 8.7845 -4.0407 -4.8267 24 1 9.4075 -6.3640 -4.5193 25 1 11.0944 -4.7238 -5.1065 26 6 9.3495 -5.7191 0.8792 27 6 8.1580 -5.3671 1.7695 28 8 8.1709 -3.9640 2.0437 29 6 2.0699 -0.7775 1.2181 30 1 -0.3633 0.4737 0.9119 31 1 -0.3634 0.5528 -0.8663 32 1 -0.3634 -1.0267 -0.0457 33 1 1.4581 -1.6617 -1.4205 34 1 2.1251 -0.1405 -2.1001 35 1 4.1898 -0.3717 -0.8824 36 1 3.8316 -2.0736 -1.3124 37 1 6.9997 -1.9921 3.1856 38 1 6.7476 -0.3723 2.4855 39 1 8.9392 -1.4143 1.8040 40 1 7.8815 -1.0407 0.4213 41 1 6.6212 -2.8499 -0.7166 42 1 6.7654 -4.5344 -0.1583 43 1 5.6113 -3.9849 1.9323 44 1 4.6143 -3.4333 0.5632 45 1 10.1349 -3.0039 0.4113 46 1 9.0532 -2.8634 -0.9981 47 1 11.2909 -3.6404 -1.2250 48 1 9.2665 -6.7547 0.5495 49 1 10.2749 -5.5847 1.4395 50 1 8.2247 -5.9216 2.7054 51 1 7.2332 -5.6290 1.2554 52 1 1.3176 -1.4805 1.5757 53 1 2.3411 -0.0841 2.0141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949486960.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:09 Heat of formation + Delta-G solvation = -91.131538 kcal Electronic energy + Delta-G solvation = -31729.740075 eV Core-core repulsion = 27793.282108 eV Total energy + Delta-G solvation = -3936.457967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.88714 -40.71650 -38.62004 -37.46043 -36.39923 -34.10370 -33.16539 -32.62882 -31.87992 -30.09707 -29.63021 -28.24334 -26.39591 -25.25324 -24.75611 -24.33661 -22.97047 -21.85574 -21.02855 -20.45836 -19.57919 -19.36669 -18.67000 -17.16494 -17.01818 -16.77210 -16.25648 -16.11025 -15.92880 -15.84766 -15.76381 -15.56986 -15.34600 -14.76459 -14.54366 -14.48421 -14.31350 -13.88322 -13.86929 -13.77544 -13.50176 -13.05135 -12.91247 -12.75621 -12.66667 -12.61977 -12.48973 -12.29908 -12.18310 -11.97114 -11.93409 -11.86089 -11.73801 -11.70839 -11.65876 -11.48142 -11.30369 -10.96883 -10.80254 -10.66410 -10.44170 -9.69137 -8.90750 -8.19217 -5.57209 1.55123 1.57204 1.64295 1.81086 1.96284 2.59745 2.79286 3.17930 3.37332 3.42261 3.59825 3.65369 3.67082 3.85255 3.88684 4.01217 4.05565 4.23490 4.28186 4.31822 4.33640 4.38626 4.45758 4.48257 4.51686 4.56248 4.60433 4.65616 4.70304 4.71980 4.74532 4.77236 4.83704 4.86195 4.89819 4.94947 4.98763 5.03283 5.06500 5.09944 5.12924 5.21992 5.24575 5.26262 5.36283 5.38763 5.52259 5.56849 5.85743 6.32553 6.34781 6.39670 6.99241 7.12040 7.68615 8.18637 8.95940 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013251 B = 0.003516 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.474510 B = 7961.111637 C = 9181.937757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 H 0.057 0.943 4 C -0.112 4.112 5 C -0.111 4.111 6 C -0.111 4.111 7 H 0.117 0.883 8 C 0.517 3.483 9 O -0.584 6.584 10 N -0.606 5.606 11 C 0.127 3.873 12 C -0.112 4.112 13 C 0.113 3.887 14 C -0.138 4.138 15 C 0.119 3.881 16 C 0.150 3.850 17 N -0.612 5.612 18 C -0.350 4.350 19 H 0.052 0.948 20 C -0.070 4.070 21 N -0.942 5.942 22 Si 1.117 2.883 23 H -0.281 1.281 24 H -0.268 1.268 25 H -0.297 1.297 26 C 0.104 3.896 27 C 0.054 3.946 28 O -0.380 6.380 29 C -0.108 4.108 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.112 0.888 45 H -0.005 1.005 46 H 0.042 0.958 47 H 0.252 0.748 48 H 0.066 0.934 49 H 0.008 0.992 50 H 0.116 0.884 51 H 0.061 0.939 52 H 0.087 0.913 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.342 1.366 5.906 21.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.115 4.115 3 H 0.076 0.924 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.132 4.132 7 H 0.135 0.865 8 C 0.307 3.693 9 O -0.464 6.464 10 N -0.338 5.338 11 C 0.004 3.996 12 C -0.151 4.151 13 C 0.072 3.928 14 C -0.177 4.177 15 C -0.003 4.003 16 C 0.024 3.976 17 N -0.338 5.338 18 C -0.480 4.480 19 H 0.070 0.930 20 C -0.267 4.267 21 N -0.583 5.583 22 Si 0.941 3.059 23 H -0.207 1.207 24 H -0.193 1.193 25 H -0.224 1.224 26 C -0.021 4.021 27 C -0.024 4.024 28 O -0.299 6.299 29 C -0.146 4.146 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.130 0.870 45 H 0.013 0.987 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.085 0.915 49 H 0.026 0.974 50 H 0.134 0.866 51 H 0.079 0.921 52 H 0.106 0.894 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.907 2.436 4.838 20.631 hybrid contribution 0.917 -0.442 1.306 1.656 sum -18.990 1.994 6.144 20.058 Atomic orbital electron populations 1.21767 0.93431 1.02563 1.01891 1.21943 0.96588 0.98594 0.94401 0.92443 1.22573 0.94408 1.00541 0.97376 1.22297 0.98714 1.01592 0.92315 1.22074 0.92223 1.02986 0.95880 0.86503 1.21197 0.84928 0.83848 0.79354 1.90625 1.82563 1.23588 1.49653 1.48214 1.13232 1.14086 1.58237 1.21362 0.82358 1.00551 0.95296 1.21809 0.99478 0.93541 1.00282 1.21744 0.94382 0.90636 0.86006 1.22190 0.94113 1.03077 0.98287 1.21837 0.99159 0.81724 0.97593 1.21312 0.94068 0.85588 0.96623 1.44246 1.86193 1.01257 1.02100 1.20138 1.29616 1.10230 0.88026 0.92999 1.27387 0.92589 0.97813 1.08952 1.70877 1.29722 1.38880 1.18833 0.82833 0.75721 0.76671 0.70688 1.20692 1.19320 1.22407 1.21724 0.96451 0.95022 0.88914 1.22978 0.97481 0.81725 1.00171 1.87818 1.94203 1.16933 1.30954 1.22203 0.94987 0.98973 0.98422 0.92750 0.92125 0.91473 0.89299 0.90988 0.93439 0.89742 0.90439 0.90063 0.90301 0.91146 0.91980 0.90179 0.90178 0.87040 0.98704 0.93913 0.93852 0.91527 0.97424 0.86646 0.92087 0.89438 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.12 71.98 0.66 -1.09 16 2 C -0.10 -1.62 3.46 -9.72 -0.03 -1.66 16 3 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 4 C -0.11 -1.70 6.33 31.89 0.20 -1.50 16 5 C -0.11 -2.13 6.34 31.67 0.20 -1.93 16 6 C -0.11 -2.19 2.45 -10.81 -0.03 -2.22 16 7 H 0.12 1.75 6.24 -2.39 -0.01 1.74 16 8 C 0.52 14.19 6.68 87.66 0.59 14.77 16 9 O -0.58 -20.27 14.97 -3.03 -0.05 -20.31 16 10 N -0.61 -16.10 2.97 -818.91 -2.43 -18.53 16 11 C 0.13 3.64 6.18 86.36 0.53 4.18 16 12 C -0.11 -3.59 5.10 30.66 0.16 -3.43 16 13 C 0.11 3.98 0.68 -10.71 -0.01 3.97 16 14 C -0.14 -4.23 4.33 30.65 0.13 -4.10 16 15 C 0.12 2.76 6.06 86.37 0.52 3.28 16 16 C 0.15 6.93 3.63 86.34 0.31 7.24 16 17 N -0.61 -29.52 2.28 -698.47 -1.59 -31.11 16 18 C -0.35 -18.70 9.46 84.03 0.80 -17.90 16 19 H 0.05 2.74 7.91 -2.91 -0.02 2.72 16 20 C -0.07 -3.88 4.80 84.86 0.41 -3.48 16 21 N -0.94 -57.11 12.80 21.65 0.28 -56.84 16 22 Si 1.12 49.29 29.97 68.60 2.06 51.35 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 25 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 26 C 0.10 4.17 6.71 86.20 0.58 4.75 16 27 C 0.05 1.67 6.58 71.93 0.47 2.14 16 28 O -0.38 -12.85 9.00 -148.98 -1.34 -14.19 16 29 C -0.11 -2.03 5.91 31.32 0.18 -1.85 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.70 8.12 -2.38 -0.02 0.68 16 33 H 0.09 1.06 8.04 -2.39 -0.02 1.04 16 34 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.05 1.13 7.85 -2.39 -0.02 1.11 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 2.17 7.83 -2.39 -0.02 2.15 16 38 H 0.08 2.44 7.04 -2.39 -0.02 2.43 16 39 H 0.08 2.51 8.14 -2.39 -0.02 2.50 16 40 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 41 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.08 2.66 6.15 -2.39 -0.01 2.65 16 43 H 0.08 1.77 7.83 -2.39 -0.02 1.76 16 44 H 0.11 1.95 5.45 -2.39 -0.01 1.94 16 45 H 0.00 -0.25 7.68 -2.39 -0.02 -0.27 16 46 H 0.04 2.22 7.07 -2.39 -0.02 2.20 16 47 H 0.25 15.76 6.71 -92.70 -0.62 15.14 16 48 H 0.07 2.57 7.96 -2.39 -0.02 2.56 16 49 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 50 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 51 H 0.06 1.76 6.29 -2.38 -0.01 1.74 16 52 H 0.09 1.27 7.84 -2.39 -0.02 1.25 16 53 H 0.06 1.39 6.68 -2.39 -0.02 1.38 16 Total: -1.00 -68.90 391.21 3.62 -65.28 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 1.02 Total: 23.19 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 5.68 Total: 1.17 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -3.75 Total: -106.48 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.39 Total: -34.50 kcal Atomic # 14 Polarization: 49.29 SS G_CDS: 2.06 Total: 51.35 kcal Total: -68.90 3.62 -65.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949486960.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.855 kcal (2) G-P(sol) polarization free energy of solvation -68.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds