Wall clock time and date at job start Tue Mar 31 2020 20:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.05285 * 2 1 4 4 C 1.53867 * 110.03676 * 121.42028 * 2 1 3 5 5 C 1.54268 * 106.60169 * 119.28522 * 4 2 1 6 6 C 1.54885 * 104.19312 * 23.60830 * 5 4 2 7 7 H 1.09008 * 110.91584 * 80.44612 * 6 5 4 8 8 C 1.50696 * 110.75882 * 203.74519 * 6 5 4 9 9 O 1.21281 * 119.99983 * 27.70604 * 8 6 5 10 10 N 1.34780 * 120.00299 * 207.71622 * 8 6 5 11 11 C 1.46984 * 120.62986 * 354.37421 * 10 8 6 12 12 C 1.53195 * 108.74646 * 126.31626 * 11 10 8 13 13 C 1.52994 * 109.36654 * 54.56670 * 12 11 10 14 14 C 1.52992 * 109.63896 * 298.79073 * 13 12 11 15 15 C 1.46922 * 120.64638 * 174.36104 * 10 8 6 16 16 C 1.53260 * 109.38615 * 178.87278 * 13 12 11 17 17 N 1.47157 * 108.40145 * 292.21158 * 16 13 12 18 18 C 1.36928 * 120.99199 * 129.53671 * 17 16 13 19 19 H 1.08005 * 120.00093 * 214.94400 * 18 17 16 20 20 C 1.38814 * 120.00076 * 34.94025 * 18 17 16 21 21 N 1.31617 * 120.00049 * 355.58631 * 20 18 17 22 22 Si 1.86797 * 120.00102 * 175.58676 * 20 18 17 23 23 H 1.48503 * 109.46984 * 60.00189 * 22 20 18 24 24 H 1.48503 * 109.47145 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47418 * 300.00177 * 22 20 18 26 26 C 1.47158 * 118.01790 * 309.51271 * 17 16 13 27 27 C 1.53285 * 108.38231 * 50.58994 * 26 17 16 28 28 O 1.42899 * 109.55669 * 59.05377 * 13 12 11 29 29 C 1.54268 * 110.03247 * 238.58914 * 2 1 3 30 30 H 1.09001 * 109.47034 * 181.41586 * 1 2 3 31 31 H 1.09000 * 109.47229 * 301.40978 * 1 2 3 32 32 H 1.09000 * 109.47424 * 61.41181 * 1 2 3 33 33 H 1.08999 * 110.03753 * 238.57198 * 4 2 1 34 34 H 1.09007 * 110.03277 * 0.02562 * 4 2 1 35 35 H 1.09007 * 110.48406 * 264.93396 * 5 4 2 36 36 H 1.08995 * 110.49013 * 142.29189 * 5 4 2 37 37 H 1.09002 * 109.61572 * 6.53631 * 11 10 8 38 38 H 1.08990 * 109.58952 * 246.09175 * 11 10 8 39 39 H 1.09002 * 109.49387 * 294.59757 * 12 11 10 40 40 H 1.08993 * 109.49305 * 174.54453 * 12 11 10 41 41 H 1.08995 * 109.48757 * 181.15958 * 14 13 12 42 42 H 1.09000 * 109.49076 * 301.20529 * 14 13 12 43 43 H 1.08997 * 109.58777 * 113.90459 * 15 10 8 44 44 H 1.09002 * 109.58276 * 353.48176 * 15 10 8 45 45 H 1.08998 * 109.68075 * 51.93610 * 16 13 12 46 46 H 1.08996 * 109.67513 * 172.48244 * 16 13 12 47 47 H 0.96999 * 120.00210 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.68501 * 290.86660 * 26 17 16 49 49 H 1.09007 * 109.71132 * 170.33221 * 26 17 16 50 50 H 1.08999 * 109.51540 * 187.73319 * 27 26 17 51 51 H 1.09004 * 109.51263 * 67.58930 * 27 26 17 52 52 H 1.08998 * 110.48788 * 98.42143 * 29 2 1 53 53 H 1.09001 * 110.59431 * 335.83730 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9037 1.0239 0.0000 4 6 2.0572 -0.7536 1.2336 5 6 2.8876 -1.9406 0.7033 6 6 3.3136 -1.5006 -0.7193 7 1 4.1718 -0.8297 -0.6784 8 6 3.6162 -2.6994 -1.5810 9 8 3.0688 -3.7588 -1.3599 10 7 4.4953 -2.5943 -2.5972 11 6 5.0737 -1.2913 -2.9553 12 6 6.6007 -1.4152 -2.9603 13 6 7.0135 -2.5625 -3.8845 14 6 6.4229 -3.8762 -3.3688 15 6 4.8941 -3.7797 -3.3681 16 6 8.5422 -2.6687 -3.9119 17 7 9.0788 -1.4751 -4.5848 18 6 10.0748 -0.7305 -4.0117 19 1 10.0912 0.3414 -4.1426 20 6 11.0634 -1.3534 -3.2622 21 7 10.9961 -2.6471 -3.0297 22 14 12.4893 -0.3554 -2.5838 23 1 11.9679 0.7024 -1.6813 24 1 13.4012 -1.2481 -1.8242 25 1 13.2320 0.2729 -3.7057 26 6 8.5136 -1.1059 -5.8924 27 6 6.9862 -1.0737 -5.7670 28 8 6.5335 -2.3084 -5.2062 29 6 2.0584 -0.7554 -1.2369 30 1 -0.3633 -1.0274 0.0254 31 1 -0.3634 0.5356 0.8771 32 1 -0.3634 0.4917 -0.9024 33 1 2.6868 -0.0955 1.8324 34 1 1.2230 -1.1198 1.8321 35 1 2.2772 -2.8426 0.6569 36 1 3.7638 -2.1038 1.3307 37 1 4.7704 -0.5427 -2.2233 38 1 4.7276 -0.9978 -3.9462 39 1 6.9525 -1.6185 -1.9489 40 1 7.0399 -0.4840 -3.3180 41 1 6.7354 -4.6947 -4.0171 42 1 6.7765 -4.0604 -2.3543 43 1 4.5333 -3.6878 -4.3925 44 1 4.4717 -4.6734 -2.9086 45 1 8.9250 -2.7186 -2.8925 46 1 8.8381 -3.5633 -4.4598 47 1 11.6871 -3.0824 -2.5063 48 1 8.8050 -1.8437 -6.6399 49 1 8.8787 -0.1217 -6.1861 50 1 6.5427 -0.9376 -6.7533 51 1 6.6915 -0.2493 -5.1177 52 1 2.3296 -0.0535 -2.0255 53 1 1.3151 -1.4657 -1.5989 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949486961.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:15:14 Heat of formation + Delta-G solvation = -85.135823 kcal Electronic energy + Delta-G solvation = -31573.968869 eV Core-core repulsion = 27637.770896 eV Total energy + Delta-G solvation = -3936.197973 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.76045 -40.55882 -38.65467 -37.35439 -36.12963 -33.93922 -33.17934 -32.52220 -31.83511 -30.16733 -29.50012 -28.27599 -26.34934 -25.28795 -24.73047 -24.25015 -23.06749 -21.79218 -20.59458 -20.42232 -19.63992 -18.79240 -18.53155 -17.21794 -16.96298 -16.76144 -16.45635 -16.20740 -15.95688 -15.76996 -15.37819 -15.21570 -15.13565 -14.63042 -14.55318 -14.33518 -14.24564 -13.89783 -13.74478 -13.43924 -13.33823 -13.23871 -13.05615 -12.84612 -12.69247 -12.53795 -12.41631 -12.22011 -12.16686 -12.09035 -12.05189 -11.87429 -11.77279 -11.67349 -11.58109 -11.48810 -11.23391 -10.99286 -10.69034 -10.59032 -10.42346 -9.63110 -8.55273 -7.87597 -5.44900 1.46268 1.48476 1.54578 1.57851 2.01499 2.47000 2.93341 3.27394 3.39332 3.55978 3.62079 3.72360 3.76827 3.98386 4.04151 4.10513 4.13174 4.29734 4.34974 4.38217 4.41726 4.45996 4.49807 4.54490 4.56200 4.60958 4.68385 4.71574 4.78357 4.80004 4.85572 4.87276 4.89304 4.98093 5.00822 5.02349 5.10563 5.12241 5.16901 5.22604 5.29970 5.32720 5.34750 5.35647 5.39844 5.55677 5.59258 5.61734 5.69288 6.37800 6.44223 6.50494 7.12903 7.15751 7.78139 8.35940 9.15195 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014409 B = 0.003203 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.707637 B = 8740.222995 C = 9387.011255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.089 0.911 4 C -0.116 4.116 5 C -0.110 4.110 6 C -0.116 4.116 7 H 0.112 0.888 8 C 0.519 3.481 9 O -0.586 6.586 10 N -0.605 5.605 11 C 0.119 3.881 12 C -0.138 4.138 13 C 0.105 3.895 14 C -0.110 4.110 15 C 0.127 3.873 16 C 0.167 3.833 17 N -0.611 5.611 18 C -0.262 4.262 19 H 0.071 0.929 20 C -0.043 4.043 21 N -0.934 5.934 22 Si 0.966 3.034 23 H -0.272 1.272 24 H -0.298 1.298 25 H -0.278 1.278 26 C 0.104 3.896 27 C 0.052 3.948 28 O -0.384 6.384 29 C -0.101 4.101 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.109 0.891 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.070 0.930 46 H -0.015 1.015 47 H 0.250 0.750 48 H 0.010 0.990 49 H 0.070 0.930 50 H 0.113 0.887 51 H 0.059 0.941 52 H 0.085 0.915 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.737 7.419 3.658 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.107 0.893 4 C -0.153 4.153 5 C -0.148 4.148 6 C -0.137 4.137 7 H 0.130 0.870 8 C 0.309 3.691 9 O -0.467 6.467 10 N -0.337 5.337 11 C -0.003 4.003 12 C -0.176 4.176 13 C 0.064 3.936 14 C -0.149 4.149 15 C 0.004 3.996 16 C 0.041 3.959 17 N -0.335 5.335 18 C -0.392 4.392 19 H 0.089 0.911 20 C -0.239 4.239 21 N -0.580 5.580 22 Si 0.794 3.206 23 H -0.197 1.197 24 H -0.224 1.224 25 H -0.204 1.204 26 C -0.021 4.021 27 C -0.026 4.026 28 O -0.304 6.304 29 C -0.139 4.139 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.003 0.997 47 H 0.059 0.941 48 H 0.028 0.972 49 H 0.089 0.911 50 H 0.131 0.869 51 H 0.078 0.922 52 H 0.104 0.896 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -19.014 6.661 3.749 20.493 hybrid contribution 1.856 -0.151 0.241 1.877 sum -17.159 6.509 3.990 18.781 Atomic orbital electron populations 1.21873 0.94370 1.01552 1.02322 1.21744 0.96274 0.99748 0.93283 0.89262 1.22229 0.99443 0.96021 0.97613 1.22276 1.00058 0.99151 0.93301 1.22422 1.01213 0.94610 0.95438 0.86977 1.21088 0.77673 0.90386 0.79967 1.90625 1.52463 1.31905 1.71706 1.48252 1.43206 1.09666 1.32580 1.21854 0.91897 0.84088 1.02463 1.22180 0.95884 0.99971 0.99584 1.21931 0.94228 0.94644 0.82759 1.21760 0.95454 0.96569 1.01082 1.21374 0.93491 0.88479 0.96252 1.21235 0.89339 0.87295 0.98058 1.44199 1.42063 1.30019 1.17225 1.19403 1.01323 0.90331 1.28110 0.91136 1.26065 0.99784 0.96308 1.01716 1.70084 1.34707 1.10273 1.42916 0.85369 0.79515 0.77788 0.77918 1.19734 1.22399 1.20382 1.21798 0.94244 0.98815 0.87286 1.23072 0.93887 0.86487 0.99110 1.87795 1.72056 1.40523 1.29984 1.22404 0.94384 0.98426 0.98685 0.93481 0.91653 0.92192 0.90484 0.91038 0.92184 0.91586 0.87262 0.90075 0.92424 0.90204 0.90527 0.91398 0.90504 0.90201 0.91212 0.99696 0.94094 0.97231 0.91137 0.86897 0.92249 0.89610 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 8.84 71.98 0.64 -1.15 16 2 C -0.09 -1.25 3.50 -10.07 -0.04 -1.28 16 3 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 4 C -0.12 -1.72 6.46 31.32 0.20 -1.52 16 5 C -0.11 -2.27 6.15 31.67 0.19 -2.07 16 6 C -0.12 -2.42 2.43 -10.25 -0.02 -2.44 16 7 H 0.11 2.04 6.23 -2.38 -0.01 2.02 16 8 C 0.52 14.79 6.83 87.66 0.60 15.39 16 9 O -0.59 -20.91 15.32 -3.03 -0.05 -20.96 16 10 N -0.61 -16.82 2.97 -818.79 -2.43 -19.25 16 11 C 0.12 2.89 6.08 86.35 0.53 3.42 16 12 C -0.14 -4.41 4.32 30.66 0.13 -4.28 16 13 C 0.11 3.85 0.68 -10.71 -0.01 3.84 16 14 C -0.11 -3.70 5.10 30.65 0.16 -3.54 16 15 C 0.13 3.79 6.18 86.36 0.53 4.33 16 16 C 0.17 7.95 4.04 86.34 0.35 8.30 16 17 N -0.61 -29.50 2.55 -697.60 -1.78 -31.28 16 18 C -0.26 -13.70 9.60 84.04 0.81 -12.89 16 19 H 0.07 3.53 7.83 -2.91 -0.02 3.51 16 20 C -0.04 -2.33 5.33 84.86 0.45 -1.87 16 21 N -0.93 -54.06 10.67 21.65 0.23 -53.83 16 22 Si 0.97 43.38 29.56 68.60 2.03 45.41 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 H -0.30 -13.64 7.11 99.48 0.71 -12.94 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 26 C 0.10 4.11 6.73 86.35 0.58 4.70 16 27 C 0.05 1.62 6.60 72.08 0.48 2.10 16 28 O -0.38 -13.38 9.00 -148.98 -1.34 -14.72 16 29 C -0.10 -1.71 5.79 31.67 0.18 -1.53 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.01 7.67 -2.38 -0.02 0.99 16 35 H 0.06 1.51 7.25 -2.38 -0.02 1.49 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 2.05 5.43 -2.39 -0.01 2.04 16 38 H 0.08 1.87 7.83 -2.39 -0.02 1.85 16 39 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.08 2.73 6.15 -2.39 -0.01 2.71 16 41 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 42 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.08 2.24 7.83 -2.39 -0.02 2.22 16 44 H 0.08 2.50 7.04 -2.39 -0.02 2.48 16 45 H 0.07 3.78 6.11 -2.39 -0.01 3.76 16 46 H -0.02 -0.81 8.14 -2.39 -0.02 -0.83 16 47 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 48 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 49 H 0.07 2.60 7.96 -2.38 -0.02 2.58 16 50 H 0.11 2.79 8.14 -2.39 -0.02 2.77 16 51 H 0.06 1.72 6.29 -2.39 -0.01 1.70 16 52 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 53 H 0.06 1.18 7.76 -2.39 -0.02 1.16 16 Total: -1.00 -66.23 391.62 3.29 -62.94 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.88 Total: 22.20 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: 5.76 Total: 9.49 kcal Atomic # 7 Polarization: -100.38 SS G_CDS: -3.98 Total: -104.36 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -1.39 Total: -35.68 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.23 3.29 -62.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949486961.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.200 kcal (2) G-P(sol) polarization free energy of solvation -66.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds