Wall clock time and date at job start Tue Mar 31 2020 21:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.89421 * 2 1 4 4 C 1.54382 * 109.82984 * 239.06962 * 2 1 3 5 5 C 1.55306 * 102.25166 * 219.13044 * 4 2 1 6 6 H 1.09007 * 111.12327 * 276.17105 * 5 4 2 7 7 C 1.50692 * 111.12818 * 152.05380 * 5 4 2 8 8 O 1.21287 * 119.99994 * 262.45367 * 7 5 4 9 9 N 1.34781 * 120.00415 * 82.44784 * 7 5 4 10 10 C 1.46919 * 120.64204 * 184.73270 * 9 7 5 11 11 C 1.53193 * 108.77420 * 233.65982 * 10 9 7 12 12 C 1.53047 * 109.33128 * 305.36623 * 11 10 9 13 13 C 1.53329 * 109.40084 * 301.35852 * 12 11 10 14 14 C 1.53188 * 109.17554 * 178.81904 * 13 12 11 15 15 N 1.46922 * 108.90302 * 54.55549 * 14 13 12 16 16 C 1.36929 * 120.64018 * 126.28549 * 15 14 13 17 17 H 1.08003 * 120.00069 * 331.07261 * 16 15 14 18 18 C 1.38816 * 119.99833 * 151.07580 * 16 15 14 19 19 N 1.31612 * 120.00056 * 344.29385 * 18 16 15 20 20 Si 1.86800 * 119.99663 * 164.29310 * 18 16 15 21 21 H 1.48499 * 109.47477 * 59.99846 * 20 18 16 22 22 H 1.48504 * 109.47214 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.47266 * 299.99796 * 20 18 16 24 24 C 1.46934 * 118.71880 * 306.31172 * 15 14 13 25 25 C 1.53044 * 109.39548 * 181.27049 * 12 11 10 26 26 C 1.53031 * 109.54695 * 61.30945 * 12 11 10 27 27 C 1.46928 * 120.63897 * 4.75235 * 9 7 5 28 28 C 1.54944 * 100.98026 * 34.10992 * 5 4 2 29 29 O 1.43232 * 109.83238 * 120.93413 * 2 1 3 30 30 H 1.09001 * 109.47276 * 180.93196 * 1 2 3 31 31 H 1.08999 * 109.47099 * 300.93266 * 1 2 3 32 32 H 1.08997 * 109.47458 * 60.93022 * 1 2 3 33 33 H 1.08998 * 110.84816 * 100.93888 * 4 2 1 34 34 H 1.08998 * 111.02459 * 337.39686 * 4 2 1 35 35 H 1.08998 * 109.58749 * 113.87511 * 10 9 7 36 36 H 1.08995 * 109.59269 * 353.44760 * 10 9 7 37 37 H 1.09005 * 109.49498 * 185.41048 * 11 10 9 38 38 H 1.08995 * 109.51208 * 65.33853 * 11 10 9 39 39 H 1.09001 * 109.67979 * 58.84176 * 13 12 11 40 40 H 1.09002 * 109.47504 * 298.66197 * 13 12 11 41 41 H 1.09007 * 109.58330 * 294.69764 * 14 13 12 42 42 H 1.08996 * 109.58914 * 174.42159 * 14 13 12 43 43 H 0.97006 * 119.99864 * 180.02562 * 19 18 16 44 44 H 1.08999 * 109.58627 * 173.42220 * 24 15 14 45 45 H 1.08999 * 109.58711 * 293.70549 * 24 15 14 46 46 H 1.08992 * 109.49624 * 61.33326 * 25 12 11 47 47 H 1.09004 * 109.51814 * 301.25922 * 25 12 11 48 48 H 1.09004 * 109.49454 * 58.65416 * 26 12 11 49 49 H 1.08996 * 109.49011 * 178.73540 * 26 12 11 50 50 H 1.09003 * 109.58511 * 246.13493 * 27 9 7 51 51 H 1.09008 * 109.58667 * 6.55095 * 27 9 7 52 52 H 1.09000 * 110.30779 * 82.49520 * 28 5 4 53 53 H 1.09005 * 110.30889 * 204.66074 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0537 -0.7465 -1.2458 5 6 3.2730 -1.5221 -0.6768 6 1 4.1622 -0.8922 -0.6514 7 6 3.5277 -2.7839 -1.4602 8 8 3.1050 -3.8457 -1.0540 9 7 4.2251 -2.7327 -2.6124 10 6 4.3935 -3.9349 -3.4400 11 6 5.8876 -4.1465 -3.7039 12 6 6.4790 -2.8745 -4.3160 13 6 5.7403 -2.5450 -5.6185 14 6 6.3164 -1.2552 -6.2112 15 7 7.7698 -1.4084 -6.3621 16 6 8.3738 -1.1812 -7.5698 17 1 7.8273 -1.3469 -8.4866 18 6 9.6885 -0.7380 -7.6158 19 7 10.2544 -0.2434 -6.5354 20 14 10.6543 -0.8435 -9.2113 21 1 9.9693 -0.0440 -10.2585 22 1 12.0236 -0.3102 -8.9972 23 1 10.7381 -2.2609 -9.6464 24 6 8.5625 -1.8106 -5.1922 25 6 7.9647 -3.0951 -4.6096 26 6 6.3212 -1.7122 -3.3332 27 6 4.8321 -1.4735 -3.0649 28 6 2.7758 -1.8444 0.7549 29 8 2.0159 -0.6926 1.1557 30 1 -0.3634 -1.0275 0.0167 31 1 -0.3633 0.5282 0.8815 32 1 -0.3634 0.4993 -0.8982 33 1 2.3671 -0.0424 -2.0166 34 1 1.3028 -1.4348 -1.6336 35 1 3.8702 -3.8029 -4.3870 36 1 3.9893 -4.8000 -2.9143 37 1 6.0206 -4.9787 -4.3953 38 1 6.3952 -4.3686 -2.7654 39 1 4.6784 -2.4087 -5.4139 40 1 5.8724 -3.3619 -6.3280 41 1 6.1044 -0.4198 -5.5438 42 1 5.8656 -1.0677 -7.1857 43 1 11.1730 0.0667 -6.5677 44 1 9.5939 -1.9920 -5.4946 45 1 8.5352 -1.0197 -4.4428 46 1 8.0769 -3.9070 -5.3281 47 1 8.4842 -3.3520 -3.6864 48 1 6.8249 -1.9559 -2.3977 49 1 6.7627 -0.8120 -3.7607 50 1 4.3443 -1.1414 -3.9814 51 1 4.7172 -0.7138 -2.2916 52 1 2.1416 -2.7308 0.7445 53 1 3.6226 -1.9920 1.4252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957570869.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:52 Heat of formation + Delta-G solvation = -83.691816 kcal Electronic energy + Delta-G solvation = -31254.411529 eV Core-core repulsion = 27318.276172 eV Total energy + Delta-G solvation = -3936.135357 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.95070 -40.73165 -39.44748 -37.35093 -35.16915 -33.75873 -32.99683 -32.62302 -31.81353 -31.57145 -29.45357 -27.09663 -26.84475 -25.25586 -24.49751 -23.85726 -23.30148 -22.10053 -21.75384 -20.26528 -19.19872 -18.85872 -18.03801 -17.55238 -17.17249 -16.80625 -16.27841 -16.23477 -15.78458 -15.52869 -15.33631 -15.17090 -15.13263 -14.89209 -14.63158 -14.61062 -14.29151 -14.00458 -13.75597 -13.43683 -13.28464 -13.11409 -13.03987 -12.89638 -12.79714 -12.71515 -12.51986 -12.31463 -12.22904 -12.11594 -12.08209 -12.02969 -11.81531 -11.73880 -11.64297 -11.16710 -11.06550 -10.89254 -10.78388 -10.49670 -10.45833 -9.61287 -8.57520 -7.83907 -5.28980 1.46696 1.48317 1.48921 1.54985 1.92548 2.52677 2.77124 3.30248 3.34618 3.52468 3.72395 3.73146 3.79359 3.82900 3.88256 3.99607 4.07706 4.16156 4.20204 4.28646 4.37452 4.43748 4.47164 4.59554 4.61903 4.66969 4.73890 4.74515 4.76065 4.77418 4.79913 4.85241 4.87860 4.91527 4.95337 5.03360 5.08403 5.10402 5.17554 5.19682 5.31481 5.31778 5.40674 5.43502 5.50450 5.60122 5.61925 5.70783 5.87415 6.02235 6.36848 6.43688 7.07547 7.20044 7.93340 8.43528 9.21100 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022181 B = 0.002630 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.054098 B =10644.174506 C =11131.708589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.071 3.929 3 H 0.100 0.900 4 C -0.130 4.130 5 C -0.145 4.145 6 H 0.129 0.871 7 C 0.528 3.472 8 O -0.582 6.582 9 N -0.599 5.599 10 C 0.114 3.886 11 C -0.114 4.114 12 C -0.041 4.041 13 C -0.112 4.112 14 C 0.142 3.858 15 N -0.608 5.608 16 C -0.260 4.260 17 H 0.062 0.938 18 C -0.049 4.049 19 N -0.933 5.933 20 Si 0.961 3.039 21 H -0.276 1.276 22 H -0.295 1.295 23 H -0.282 1.282 24 C 0.181 3.819 25 C -0.119 4.119 26 C -0.122 4.122 27 C 0.109 3.891 28 C 0.070 3.930 29 O -0.396 6.396 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.082 0.918 40 H 0.048 0.952 41 H 0.026 0.974 42 H 0.045 0.955 43 H 0.248 0.752 44 H 0.042 0.958 45 H 0.006 0.994 46 H 0.044 0.956 47 H 0.057 0.943 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.086 0.914 51 H 0.106 0.894 52 H 0.059 0.941 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.889 -1.236 11.103 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.014 3.986 3 H 0.118 0.882 4 C -0.168 4.168 5 C -0.166 4.166 6 H 0.147 0.853 7 C 0.317 3.683 8 O -0.462 6.462 9 N -0.330 5.330 10 C -0.008 4.008 11 C -0.152 4.152 12 C -0.041 4.041 13 C -0.150 4.150 14 C 0.017 3.983 15 N -0.332 5.332 16 C -0.390 4.390 17 H 0.080 0.920 18 C -0.244 4.244 19 N -0.579 5.579 20 Si 0.789 3.211 21 H -0.201 1.201 22 H -0.222 1.222 23 H -0.208 1.208 24 C 0.056 3.944 25 C -0.158 4.158 26 C -0.160 4.160 27 C -0.013 4.013 28 C -0.007 4.007 29 O -0.316 6.316 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.024 0.976 46 H 0.063 0.937 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.104 0.896 51 H 0.124 0.876 52 H 0.077 0.923 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.003 -1.652 11.506 20.597 hybrid contribution 1.309 -0.167 -1.131 1.737 sum -15.694 -1.819 10.375 18.902 Atomic orbital electron populations 1.22149 0.94153 1.02302 1.03326 1.22943 0.95159 0.96841 0.83663 0.88242 1.23179 0.95283 0.99380 0.98916 1.23033 1.02268 0.95377 0.95925 0.85299 1.20471 0.77067 0.90226 0.80568 1.90673 1.53462 1.32680 1.69400 1.48160 1.51628 1.11497 1.21750 1.21630 0.96383 0.87805 0.95003 1.21895 0.94931 0.97623 1.00729 1.20360 0.94241 0.94812 0.94709 1.22055 0.99039 0.98148 0.95804 1.21076 0.83828 0.95355 0.98037 1.44236 1.02580 1.78887 1.07495 1.19434 0.96465 1.37217 0.85912 0.92030 1.25727 1.00151 0.98852 0.99708 1.70146 1.13396 1.44769 1.29584 0.85447 0.77610 0.77772 0.80247 1.20136 1.22174 1.20797 1.20535 0.94760 0.91850 0.87299 1.22051 0.96007 0.98565 0.99222 1.21944 0.96175 0.99081 0.98763 1.21985 0.92579 0.84965 1.01746 1.23189 0.95457 0.88786 0.93266 1.88433 1.71009 1.40685 1.31431 0.93206 0.91851 0.89579 0.86759 0.90559 0.89930 0.90192 0.90438 0.92320 0.89957 0.93282 0.95602 0.93682 0.94268 0.93935 0.97617 0.93749 0.92450 0.92097 0.91148 0.89593 0.87643 0.92277 0.88824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.09 9.44 71.98 0.68 -1.41 16 2 C 0.07 1.03 4.16 31.06 0.13 1.16 16 3 H 0.10 1.15 8.14 -2.38 -0.02 1.13 16 4 C -0.13 -1.74 6.01 31.86 0.19 -1.55 16 5 C -0.14 -2.45 2.47 -10.09 -0.02 -2.48 16 6 H 0.13 1.75 6.51 -2.38 -0.02 1.73 16 7 C 0.53 11.93 6.97 87.65 0.61 12.54 16 8 O -0.58 -17.46 15.12 -3.05 -0.05 -17.51 16 9 N -0.60 -12.37 2.97 -818.93 -2.43 -14.80 16 10 C 0.11 2.46 5.97 86.36 0.52 2.98 16 11 C -0.11 -2.67 4.90 30.67 0.15 -2.52 16 12 C -0.04 -1.13 0.51 -52.03 -0.03 -1.16 16 13 C -0.11 -3.20 4.15 30.77 0.13 -3.07 16 14 C 0.14 5.25 6.04 86.36 0.52 5.77 16 15 N -0.61 -28.79 2.99 -699.11 -2.09 -30.88 16 16 C -0.26 -13.90 9.58 84.04 0.81 -13.09 16 17 H 0.06 3.24 7.88 -2.91 -0.02 3.21 16 18 C -0.05 -2.68 4.94 84.86 0.42 -2.26 16 19 N -0.93 -54.02 11.18 21.65 0.24 -53.77 16 20 Si 0.96 44.30 29.58 68.60 2.03 46.33 16 21 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 24 C 0.18 8.25 4.82 86.36 0.42 8.67 16 25 C -0.12 -4.20 4.90 30.67 0.15 -4.05 16 26 C -0.12 -3.04 4.14 30.67 0.13 -2.91 16 27 C 0.11 2.01 5.86 86.36 0.51 2.51 16 28 C 0.07 1.39 7.06 72.65 0.51 1.90 16 29 O -0.40 -8.12 11.02 -148.98 -1.64 -9.76 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 32 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.16 7.74 -2.39 -0.02 1.14 16 35 H 0.08 1.61 6.66 -2.39 -0.02 1.59 16 36 H 0.08 1.90 7.00 -2.39 -0.02 1.89 16 37 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 38 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.08 1.88 5.01 -2.39 -0.01 1.87 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.03 0.93 6.72 -2.38 -0.02 0.91 16 42 H 0.04 1.68 7.93 -2.39 -0.02 1.66 16 43 H 0.25 14.05 8.31 -92.70 -0.77 13.28 16 44 H 0.04 2.28 6.08 -2.39 -0.01 2.26 16 45 H 0.01 0.28 6.68 -2.39 -0.02 0.26 16 46 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.06 1.87 8.14 -2.38 -0.02 1.86 16 48 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.07 2.13 4.99 -2.39 -0.01 2.11 16 50 H 0.09 1.48 6.72 -2.39 -0.02 1.47 16 51 H 0.11 1.45 5.54 -2.38 -0.01 1.44 16 52 H 0.06 1.39 7.21 -2.39 -0.02 1.37 16 53 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 Total: -1.00 -66.79 384.80 2.76 -64.03 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.89 Total: 15.34 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: 5.81 Total: 1.03 kcal Atomic # 7 Polarization: -95.18 SS G_CDS: -4.28 Total: -99.46 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -1.69 Total: -27.26 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -66.79 2.76 -64.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957570869.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.663 kcal (2) G-P(sol) polarization free energy of solvation -66.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds