Wall clock time and date at job start Tue Mar 31 2020 21:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.86774 * 2 1 4 4 C 1.54103 * 110.00242 * 121.09021 * 2 1 3 5 5 C 1.54807 * 104.18627 * 121.52261 * 4 2 1 6 6 H 1.09002 * 110.93750 * 262.66176 * 5 4 2 7 7 C 1.50703 * 110.90261 * 139.07483 * 5 4 2 8 8 O 1.21281 * 120.00361 * 341.21966 * 7 5 4 9 9 N 1.34782 * 119.99759 * 161.21343 * 7 5 4 10 10 C 1.46927 * 120.64282 * 185.09391 * 9 7 5 11 11 C 1.53184 * 108.77545 * 126.38305 * 10 9 7 12 12 C 1.53045 * 109.33826 * 54.63182 * 11 10 9 13 13 C 1.53032 * 109.44090 * 58.70992 * 12 11 10 14 14 C 1.53188 * 109.33269 * 181.23888 * 13 12 11 15 15 N 1.46935 * 108.77890 * 305.37544 * 14 13 12 16 16 C 1.36935 * 120.64047 * 233.65392 * 15 14 13 17 17 H 1.08005 * 119.99783 * 26.72058 * 16 15 14 18 18 C 1.38804 * 120.00152 * 206.72283 * 16 15 14 19 19 N 1.31620 * 120.00305 * 16.28776 * 18 16 15 20 20 Si 1.86801 * 120.00045 * 196.28906 * 18 16 15 21 21 H 1.48498 * 109.47269 * 90.00161 * 20 18 16 22 22 H 1.48506 * 109.47288 * 209.99937 * 20 18 16 23 23 H 1.48496 * 109.47259 * 329.99847 * 20 18 16 24 24 C 1.46925 * 118.71830 * 53.63592 * 15 14 13 25 25 C 1.53046 * 109.39064 * 178.73684 * 12 11 10 26 26 C 1.53026 * 109.54931 * 298.69653 * 12 11 10 27 27 C 1.46934 * 120.64223 * 5.11641 * 9 7 5 28 28 C 1.54992 * 102.09571 * 20.88154 * 5 4 2 29 29 O 1.43748 * 109.87779 * 238.99495 * 2 1 3 30 30 H 1.09002 * 109.47119 * 179.55114 * 1 2 3 31 31 H 1.08994 * 109.47023 * 299.55450 * 1 2 3 32 32 H 1.09003 * 109.46920 * 59.55150 * 1 2 3 33 33 H 1.08997 * 110.48654 * 2.84599 * 4 2 1 34 34 H 1.09002 * 110.48111 * 240.20016 * 4 2 1 35 35 H 1.08995 * 109.58499 * 6.59179 * 10 9 7 36 36 H 1.09004 * 109.58526 * 246.16763 * 10 9 7 37 37 H 1.09007 * 109.49066 * 294.67065 * 11 10 9 38 38 H 1.08996 * 109.51324 * 174.60876 * 11 10 9 39 39 H 1.08999 * 109.49191 * 301.19385 * 13 12 11 40 40 H 1.09002 * 109.49434 * 61.28228 * 13 12 11 41 41 H 1.09001 * 109.58360 * 65.16178 * 14 13 12 42 42 H 1.08999 * 109.58582 * 185.58512 * 14 13 12 43 43 H 0.97000 * 120.00563 * 180.02562 * 19 18 16 44 44 H 1.08998 * 109.58401 * 186.56861 * 24 15 14 45 45 H 1.08999 * 109.58790 * 66.14150 * 24 15 14 46 46 H 1.08994 * 109.49645 * 298.67757 * 25 12 11 47 47 H 1.09001 * 109.49252 * 58.76873 * 25 12 11 48 48 H 1.08998 * 109.49259 * 181.25770 * 26 12 11 49 49 H 1.09001 * 109.49341 * 301.34188 * 26 12 11 50 50 H 1.09004 * 109.58207 * 353.40639 * 27 9 7 51 51 H 1.08998 * 109.58142 * 113.68432 * 27 9 7 52 52 H 1.08999 * 110.62151 * 81.46955 * 28 5 4 53 53 H 1.08997 * 110.62295 * 204.31617 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0572 -0.7478 1.2401 5 6 2.9243 -1.8889 0.6548 6 1 2.3612 -2.8209 0.6075 7 6 4.1889 -2.0676 1.4548 8 8 4.5781 -1.1775 2.1809 9 7 4.8873 -3.2167 1.3635 10 6 6.0590 -3.4509 2.2185 11 6 5.8759 -4.7834 2.9517 12 6 5.6120 -5.8919 1.9300 13 6 6.7858 -5.9726 0.9514 14 6 6.5051 -7.0618 -0.0885 15 7 6.2157 -8.3208 0.6115 16 6 6.9124 -9.4613 0.3133 17 1 7.9155 -9.3937 -0.0814 18 6 6.3296 -10.7043 0.5183 19 7 5.0278 -10.8011 0.6866 20 14 7.3928 -12.2398 0.5553 21 1 7.8420 -12.4974 1.9470 22 1 6.6044 -13.3997 0.0670 23 1 8.5770 -12.0430 -0.3187 24 6 5.1645 -8.3323 1.6380 25 6 5.4602 -7.2291 2.6589 26 6 4.3264 -5.5829 1.1597 27 6 4.4920 -4.2593 0.4065 28 6 3.2398 -1.3602 -0.7676 29 8 2.0188 -0.6963 -1.1587 30 1 -0.3633 -1.0276 -0.0081 31 1 -0.3633 0.5069 0.8939 32 1 -0.3633 0.5208 -0.8860 33 1 1.2294 -1.1564 1.8196 34 1 2.6645 -0.0844 1.8559 35 1 6.1484 -2.6433 2.9450 36 1 6.9578 -3.4929 1.6033 37 1 5.0297 -4.7094 3.6349 38 1 6.7793 -5.0158 3.5155 39 1 6.9072 -5.0128 0.4491 40 1 7.6977 -6.2163 1.4964 41 1 5.6460 -6.7752 -0.6951 42 1 7.3790 -7.1913 -0.7270 43 1 4.6205 -11.6697 0.8302 44 1 5.1535 -9.3003 2.1389 45 1 4.1965 -8.1488 1.1718 46 1 6.3840 -7.4617 3.1884 47 1 4.6383 -7.1634 3.3718 48 1 4.1274 -6.3840 0.4479 49 1 3.4941 -5.5018 1.8588 50 1 3.5472 -3.9851 -0.0628 51 1 5.2623 -4.3651 -0.3573 52 1 4.0689 -0.6532 -0.7392 53 1 3.4640 -2.1858 -1.4430 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957570870.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:56 Heat of formation + Delta-G solvation = -82.446126 kcal Electronic energy + Delta-G solvation = -31253.664010 eV Core-core repulsion = 27317.582671 eV Total energy + Delta-G solvation = -3936.081339 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.97049 -40.74167 -39.43865 -37.36757 -35.16256 -33.65014 -33.17017 -32.63998 -31.78770 -31.55186 -29.46340 -27.12186 -26.67945 -25.25301 -24.45333 -23.92894 -23.34752 -22.25388 -21.67512 -20.33112 -19.25630 -18.86241 -17.99593 -17.45041 -16.84379 -16.78160 -16.42373 -16.26082 -15.85146 -15.74275 -15.47964 -15.25095 -15.10082 -14.83836 -14.72459 -14.47471 -14.29926 -14.03757 -13.61507 -13.40025 -13.17570 -13.07425 -12.99897 -12.94646 -12.88592 -12.76397 -12.54505 -12.31545 -12.26093 -12.12034 -12.05060 -11.82557 -11.76580 -11.72612 -11.61631 -11.15998 -11.07490 -10.89672 -10.80496 -10.73929 -10.45113 -9.62116 -8.60239 -7.83144 -5.26688 1.46483 1.46895 1.48405 1.56175 1.92277 2.52861 2.82149 3.30100 3.32660 3.58171 3.70010 3.74682 3.79563 3.84461 3.89655 3.99422 4.09958 4.14665 4.16572 4.26920 4.36891 4.44733 4.46307 4.57209 4.59622 4.63344 4.68941 4.75076 4.77050 4.80516 4.81400 4.86289 4.88584 4.94663 4.99006 5.03071 5.08328 5.10188 5.10940 5.19547 5.30755 5.31609 5.40550 5.43581 5.51169 5.60139 5.62500 5.71462 5.86680 5.88933 6.36264 6.43371 7.07089 7.19929 7.93725 8.42602 9.21647 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022108 B = 0.002635 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.212950 B =10623.027580 C =11146.263064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.069 3.931 3 H 0.071 0.929 4 C -0.137 4.137 5 C -0.144 4.144 6 H 0.124 0.876 7 C 0.526 3.474 8 O -0.578 6.578 9 N -0.600 5.600 10 C 0.114 3.886 11 C -0.113 4.113 12 C -0.041 4.041 13 C -0.112 4.112 14 C 0.142 3.858 15 N -0.609 5.609 16 C -0.256 4.256 17 H 0.063 0.937 18 C -0.052 4.052 19 N -0.933 5.933 20 Si 0.961 3.039 21 H -0.289 1.289 22 H -0.296 1.296 23 H -0.270 1.270 24 C 0.178 3.822 25 C -0.119 4.119 26 C -0.121 4.121 27 C 0.107 3.893 28 C 0.065 3.935 29 O -0.385 6.385 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.049 0.951 41 H 0.026 0.974 42 H 0.045 0.955 43 H 0.248 0.752 44 H 0.048 0.952 45 H 0.005 0.995 46 H 0.044 0.956 47 H 0.058 0.942 48 H 0.069 0.931 49 H 0.063 0.937 50 H 0.104 0.896 51 H 0.085 0.915 52 H 0.060 0.940 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.637 20.488 0.547 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.011 3.989 3 H 0.089 0.911 4 C -0.175 4.175 5 C -0.165 4.165 6 H 0.141 0.859 7 C 0.315 3.685 8 O -0.458 6.458 9 N -0.332 5.332 10 C -0.008 4.008 11 C -0.151 4.151 12 C -0.042 4.042 13 C -0.151 4.151 14 C 0.017 3.983 15 N -0.333 5.333 16 C -0.386 4.386 17 H 0.081 0.919 18 C -0.247 4.247 19 N -0.580 5.580 20 Si 0.790 3.210 21 H -0.216 1.216 22 H -0.223 1.223 23 H -0.195 1.195 24 C 0.053 3.947 25 C -0.158 4.158 26 C -0.159 4.159 27 C -0.015 4.015 28 C -0.012 4.012 29 O -0.304 6.304 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.099 0.901 40 H 0.068 0.932 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.023 0.977 46 H 0.062 0.938 47 H 0.076 0.924 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.122 0.878 51 H 0.103 0.897 52 H 0.078 0.922 53 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.601 20.807 0.714 21.559 hybrid contribution 0.599 -1.516 0.380 1.674 sum -5.001 19.290 1.094 19.958 Atomic orbital electron populations 1.21941 0.92211 1.03159 1.03238 1.22891 0.96303 0.95779 0.83893 0.91124 1.22986 0.99643 0.96429 0.98393 1.22928 0.94412 1.02540 0.96664 0.85861 1.20523 0.84983 0.81228 0.81788 1.90650 1.70818 1.42020 1.42361 1.48180 1.29411 1.16748 1.38813 1.21628 0.87738 0.97300 0.94104 1.21897 1.02419 0.93397 0.97400 1.20311 0.95227 0.93589 0.95025 1.22002 0.97166 0.98595 0.97327 1.21083 0.97769 0.86064 0.93431 1.44286 1.42097 1.05712 1.41169 1.19502 0.95544 0.85135 1.38438 0.91892 1.25673 0.96213 1.00335 1.02478 1.70156 1.09573 1.23400 1.54891 0.85357 0.78379 0.79645 0.77629 1.21576 1.22289 1.19501 1.20597 0.89031 0.96470 0.88625 1.22054 1.00180 0.95690 0.97894 1.21934 0.97226 0.96928 0.99773 1.21989 1.02424 0.86076 0.90975 1.23490 0.87744 0.97165 0.92780 1.88892 1.39544 1.67917 1.34073 0.91826 0.89668 0.91798 0.88751 0.90110 0.90108 0.90187 0.92083 0.90363 0.90137 0.93225 0.95619 0.93673 0.94302 0.93389 0.97700 0.93759 0.92351 0.91232 0.91846 0.87798 0.89718 0.92170 0.86453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.37 71.98 0.67 -1.19 16 2 C 0.07 1.12 4.05 30.97 0.13 1.24 16 3 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.14 -2.33 6.16 31.58 0.19 -2.13 16 5 C -0.14 -2.54 2.46 -10.24 -0.03 -2.56 16 6 H 0.12 1.85 6.72 -2.39 -0.02 1.83 16 7 C 0.53 11.99 6.93 87.66 0.61 12.59 16 8 O -0.58 -17.10 14.98 -3.03 -0.05 -17.14 16 9 N -0.60 -12.66 2.97 -818.89 -2.43 -15.10 16 10 C 0.11 2.49 5.95 86.36 0.51 3.01 16 11 C -0.11 -2.63 4.90 30.67 0.15 -2.48 16 12 C -0.04 -1.14 0.51 -52.13 -0.03 -1.17 16 13 C -0.11 -3.26 4.15 30.67 0.13 -3.14 16 14 C 0.14 5.30 6.05 86.36 0.52 5.82 16 15 N -0.61 -28.98 3.00 -699.10 -2.10 -31.08 16 16 C -0.26 -13.74 9.61 84.03 0.81 -12.93 16 17 H 0.06 3.33 7.88 -2.91 -0.02 3.31 16 18 C -0.05 -2.86 4.95 84.86 0.42 -2.44 16 19 N -0.93 -54.19 11.04 21.65 0.24 -53.95 16 20 Si 0.96 44.55 29.58 68.60 2.03 46.58 16 21 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 C 0.18 8.15 4.85 86.36 0.42 8.57 16 25 C -0.12 -4.19 4.90 30.67 0.15 -4.04 16 26 C -0.12 -3.04 4.14 30.67 0.13 -2.91 16 27 C 0.11 2.06 5.83 86.36 0.50 2.57 16 28 C 0.07 1.11 7.04 72.66 0.51 1.62 16 29 O -0.38 -7.58 11.19 -148.98 -1.67 -9.25 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 1.36 7.70 -2.39 -0.02 1.34 16 34 H 0.08 1.66 6.79 -2.39 -0.02 1.64 16 35 H 0.08 1.91 7.04 -2.39 -0.02 1.90 16 36 H 0.08 1.61 6.67 -2.38 -0.02 1.60 16 37 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.08 1.90 4.99 -2.39 -0.01 1.89 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.03 0.94 6.72 -2.39 -0.02 0.92 16 42 H 0.04 1.71 7.93 -2.39 -0.02 1.69 16 43 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.05 2.58 5.92 -2.39 -0.01 2.57 16 45 H 0.01 0.24 6.66 -2.39 -0.02 0.22 16 46 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.07 2.13 4.98 -2.39 -0.01 2.11 16 49 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 50 H 0.10 1.56 5.16 -2.39 -0.01 1.55 16 51 H 0.08 1.57 6.74 -2.39 -0.02 1.55 16 52 H 0.06 1.09 8.04 -2.39 -0.02 1.07 16 53 H 0.12 1.57 7.78 -2.39 -0.02 1.55 16 Total: -1.00 -66.00 383.38 2.72 -63.28 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.89 Total: 16.24 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 5.80 Total: 0.43 kcal Atomic # 7 Polarization: -95.84 SS G_CDS: -4.29 Total: -100.13 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -1.71 Total: -26.39 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.00 2.72 -63.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957570870.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.169 kcal (2) G-P(sol) polarization free energy of solvation -65.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds