Wall clock time and date at job start Tue Mar 31 2020 21:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 110.67107 * 2 1 4 4 C 1.55339 * 110.58643 * 122.97016 * 2 1 3 5 5 C 1.54811 * 101.93195 * 155.54918 * 4 2 1 6 6 H 1.08998 * 110.48815 * 97.82397 * 5 4 2 7 7 C 1.50701 * 110.48997 * 220.34136 * 5 4 2 8 8 O 1.21290 * 119.99736 * 358.15184 * 7 5 4 9 9 N 1.34770 * 120.00402 * 178.15528 * 7 5 4 10 10 C 1.46931 * 120.64009 * 359.71813 * 9 7 5 11 11 C 1.52766 * 109.01392 * 233.61213 * 10 9 7 12 12 C 1.53032 * 109.40137 * 305.59885 * 11 10 9 13 13 C 1.53046 * 109.43317 * 181.11765 * 12 11 10 14 14 C 1.53196 * 109.32868 * 58.69133 * 13 12 11 15 15 N 1.46933 * 108.76919 * 54.64181 * 14 13 12 16 16 C 1.36933 * 120.63776 * 126.34210 * 15 14 13 17 17 H 1.07998 * 119.99871 * 207.69678 * 16 15 14 18 18 C 1.38811 * 120.00309 * 27.68890 * 16 15 14 19 19 N 1.31627 * 119.99898 * 17.35370 * 18 16 15 20 20 Si 1.86805 * 120.00161 * 197.35607 * 18 16 15 21 21 H 1.48504 * 109.46867 * 89.99927 * 20 18 16 22 22 H 1.48499 * 109.46928 * 209.99973 * 20 18 16 23 23 H 1.48497 * 109.46860 * 330.00323 * 20 18 16 24 24 C 1.46923 * 118.71708 * 306.35605 * 15 14 13 25 25 C 1.53030 * 109.45943 * 301.18390 * 12 11 10 26 26 C 1.53042 * 109.54850 * 61.18413 * 12 11 10 27 27 C 1.46928 * 120.64514 * 179.97438 * 9 7 5 28 28 C 1.54108 * 104.30406 * 339.07921 * 5 4 2 29 29 O 1.43743 * 107.29366 * 358.04041 * 28 5 4 30 30 H 1.09011 * 109.46713 * 181.50713 * 1 2 3 31 31 H 1.08992 * 109.47528 * 301.50647 * 1 2 3 32 32 H 1.09001 * 109.47316 * 61.51504 * 1 2 3 33 33 H 1.09003 * 110.96162 * 37.41566 * 4 2 1 34 34 H 1.08996 * 111.00842 * 273.70085 * 4 2 1 35 35 H 1.08995 * 109.58855 * 353.44646 * 10 9 7 36 36 H 1.09001 * 109.58758 * 113.86798 * 10 9 7 37 37 H 1.09003 * 109.55888 * 185.56219 * 11 10 9 38 38 H 1.08995 * 109.38019 * 65.53311 * 11 10 9 39 39 H 1.08997 * 109.49149 * 178.64439 * 13 12 11 40 40 H 1.09001 * 109.49609 * 298.73281 * 13 12 11 41 41 H 1.08995 * 109.58358 * 294.85162 * 14 13 12 42 42 H 1.08999 * 109.58564 * 174.42635 * 14 13 12 43 43 H 0.97000 * 119.99774 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.58695 * 293.83974 * 24 15 14 45 45 H 1.09004 * 109.57666 * 173.41999 * 24 15 14 46 46 H 1.08993 * 109.49705 * 61.26252 * 25 12 11 47 47 H 1.08996 * 109.49485 * 181.32273 * 25 12 11 48 48 H 1.08990 * 109.49572 * 178.72274 * 26 12 11 49 49 H 1.09000 * 109.52383 * 58.64500 * 26 12 11 50 50 H 1.09001 * 109.58493 * 246.11747 * 27 9 7 51 51 H 1.08995 * 109.58758 * 6.39939 * 27 9 7 52 52 H 1.09001 * 109.87606 * 117.46096 * 28 5 4 53 53 H 1.09000 * 109.87986 * 238.46367 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0763 -0.7914 1.2200 5 6 3.4796 -1.2166 0.7235 6 1 4.2407 -0.5330 1.0997 7 6 3.7843 -2.6296 1.1498 8 8 2.9839 -3.2465 1.8205 9 7 4.9460 -3.2076 0.7858 10 6 5.9230 -2.4754 -0.0316 11 6 6.2705 -3.3129 -1.2611 12 6 6.7377 -4.7004 -0.8154 13 6 7.1126 -5.5308 -2.0452 14 6 8.2196 -4.8127 -2.8235 15 7 9.3406 -4.5444 -1.9123 16 6 10.6091 -4.9524 -2.2274 17 1 11.3171 -5.1704 -1.4416 18 6 10.9851 -5.0860 -3.5570 19 7 10.2729 -4.5115 -4.5032 20 14 12.5018 -6.0811 -4.0033 21 1 12.1159 -7.4973 -4.2285 22 1 13.1083 -5.5303 -5.2418 23 1 13.4865 -6.0067 -2.8943 24 6 9.0739 -3.8302 -0.6563 25 6 7.9573 -4.5587 0.0980 26 6 5.6097 -5.4005 -0.0541 27 6 5.2577 -4.5842 1.1941 28 6 3.3840 -1.1253 -0.8119 29 8 2.0385 -0.7351 -1.1339 30 1 -0.3633 -1.0274 0.0270 31 1 -0.3634 0.5370 0.8761 32 1 -0.3634 0.4901 -0.9033 33 1 1.4565 -1.6636 1.4282 34 1 2.1522 -0.1512 2.0988 35 1 5.4948 -1.5244 -0.3483 36 1 6.8260 -2.2956 0.5518 37 1 7.0667 -2.8240 -1.8225 38 1 5.3878 -3.4118 -1.8927 39 1 7.4683 -6.5109 -1.7276 40 1 6.2375 -5.6503 -2.6840 41 1 7.8369 -3.8720 -3.2191 42 1 8.5589 -5.4454 -3.6438 43 1 10.5355 -4.6052 -5.4323 44 1 8.7610 -2.8094 -0.8758 45 1 9.9771 -3.8145 -0.0462 46 1 7.6835 -3.9862 0.9842 47 1 8.3048 -5.5476 0.3968 48 1 5.9354 -6.3972 0.2432 49 1 4.7322 -5.4808 -0.6957 50 1 6.1058 -4.5791 1.8788 51 1 4.3915 -5.0237 1.6886 52 1 4.0854 -0.3780 -1.1831 53 1 3.6072 -2.0956 -1.2556 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957570872.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:05 Heat of formation + Delta-G solvation = -82.110933 kcal Electronic energy + Delta-G solvation = -31499.097956 eV Core-core repulsion = 27563.031152 eV Total energy + Delta-G solvation = -3936.066804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.05353 -40.68621 -39.38444 -37.38376 -35.19658 -33.69132 -33.14344 -32.68751 -31.75230 -31.55536 -29.49171 -27.21936 -26.72851 -25.17049 -24.39791 -23.91881 -23.25941 -22.25390 -21.78720 -20.38178 -19.13313 -18.41197 -18.17329 -17.57412 -17.28313 -16.80933 -16.57321 -16.10792 -15.78815 -15.65342 -15.45225 -15.25995 -15.10769 -14.92123 -14.68690 -14.41026 -14.34007 -14.00933 -13.40088 -13.28554 -13.18124 -13.11659 -13.02618 -12.92232 -12.79341 -12.74369 -12.55316 -12.29517 -12.23535 -12.19487 -12.05911 -11.99558 -11.81812 -11.73082 -11.64452 -11.17555 -11.07381 -10.94737 -10.88408 -10.54032 -10.46044 -9.62115 -8.59811 -7.84065 -5.27494 1.46162 1.48343 1.51078 1.56028 1.94029 2.52688 2.84333 3.27346 3.29945 3.45821 3.72681 3.78586 3.81253 3.83990 3.90396 4.00505 4.11747 4.15942 4.23201 4.28099 4.35955 4.45082 4.46654 4.54469 4.58977 4.63054 4.66087 4.73618 4.76125 4.79496 4.84244 4.85191 4.87036 4.88513 4.99704 5.02755 5.07197 5.09867 5.17968 5.18629 5.28830 5.30829 5.40087 5.43070 5.49927 5.59305 5.61805 5.70756 5.86711 5.92340 6.36906 6.42955 7.08417 7.19500 7.93108 8.42941 9.21115 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022964 B = 0.002749 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.982718 B =10182.435206 C =10789.548514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.094 0.906 4 C -0.133 4.133 5 C -0.143 4.143 6 H 0.140 0.860 7 C 0.521 3.479 8 O -0.580 6.580 9 N -0.602 5.602 10 C 0.106 3.894 11 C -0.121 4.121 12 C -0.041 4.041 13 C -0.120 4.120 14 C 0.181 3.819 15 N -0.608 5.608 16 C -0.257 4.257 17 H 0.063 0.937 18 C -0.050 4.050 19 N -0.932 5.932 20 Si 0.960 3.040 21 H -0.289 1.289 22 H -0.296 1.296 23 H -0.269 1.269 24 C 0.142 3.858 25 C -0.112 4.112 26 C -0.114 4.114 27 C 0.114 3.886 28 C 0.056 3.944 29 O -0.398 6.398 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.006 0.994 42 H 0.043 0.957 43 H 0.248 0.752 44 H 0.027 0.973 45 H 0.046 0.954 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.078 0.922 49 H 0.057 0.943 50 H 0.083 0.917 51 H 0.078 0.922 52 H 0.094 0.906 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.554 9.350 12.387 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.111 0.889 4 C -0.171 4.171 5 C -0.164 4.164 6 H 0.158 0.842 7 C 0.310 3.690 8 O -0.461 6.461 9 N -0.333 5.333 10 C -0.016 4.016 11 C -0.159 4.159 12 C -0.041 4.041 13 C -0.159 4.159 14 C 0.055 3.945 15 N -0.332 5.332 16 C -0.388 4.388 17 H 0.081 0.919 18 C -0.246 4.246 19 N -0.579 5.579 20 Si 0.789 3.211 21 H -0.216 1.216 22 H -0.223 1.223 23 H -0.194 1.194 24 C 0.017 3.983 25 C -0.150 4.150 26 C -0.152 4.152 27 C -0.008 4.008 28 C -0.021 4.021 29 O -0.318 6.318 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.024 0.976 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.064 0.936 46 H 0.100 0.900 47 H 0.068 0.932 48 H 0.097 0.903 49 H 0.075 0.925 50 H 0.101 0.899 51 H 0.097 0.903 52 H 0.112 0.888 53 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.018 8.986 12.396 22.158 hybrid contribution 1.244 -0.912 -0.776 1.727 sum -14.773 8.074 11.620 20.456 Atomic orbital electron populations 1.21801 0.92429 1.02536 1.03565 1.23467 0.96097 0.95777 0.83667 0.88860 1.23214 0.93494 1.01073 0.99288 1.22802 1.01742 0.94096 0.97766 0.84214 1.20775 0.80333 0.89060 0.78850 1.90651 1.48154 1.66008 1.41260 1.48169 1.18184 1.15011 1.51982 1.21935 0.92626 0.95362 0.91647 1.21875 1.01013 0.95679 0.97375 1.20302 0.94295 0.94832 0.94659 1.22059 0.98108 0.98528 0.97176 1.20545 0.86133 0.95979 0.91824 1.44268 1.03757 1.65201 1.19967 1.19479 0.90458 1.37706 0.91119 0.91925 1.25692 1.00867 1.01320 0.96690 1.70172 1.42475 1.45662 0.99571 0.85375 0.80013 0.78489 0.77247 1.21624 1.22281 1.19418 1.21083 0.96397 0.93764 0.87063 1.21998 0.94821 1.00594 0.97625 1.21902 0.97727 0.99132 0.96428 1.21626 1.01448 0.81081 0.96621 1.23305 0.85164 1.01457 0.92130 1.88901 1.28303 1.74243 1.40341 0.93200 0.88897 0.91590 0.91062 0.87628 0.87783 0.89571 0.90966 0.92172 0.93687 0.92518 0.97590 0.93825 0.94296 0.95557 0.93588 0.90043 0.93195 0.90346 0.92467 0.89929 0.90307 0.88819 0.90760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.66 71.98 0.70 -1.34 16 2 C 0.07 1.05 3.98 31.40 0.13 1.18 16 3 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 4 C -0.13 -2.22 5.97 32.02 0.19 -2.03 16 5 C -0.14 -2.44 2.50 -10.55 -0.03 -2.46 16 6 H 0.14 1.54 7.94 -2.39 -0.02 1.52 16 7 C 0.52 12.37 6.89 87.66 0.60 12.98 16 8 O -0.58 -18.06 14.86 -3.06 -0.05 -18.11 16 9 N -0.60 -13.12 2.95 -819.63 -2.42 -15.55 16 10 C 0.11 2.06 5.13 86.22 0.44 2.50 16 11 C -0.12 -3.13 4.13 30.53 0.13 -3.00 16 12 C -0.04 -1.15 0.51 -52.13 -0.03 -1.17 16 13 C -0.12 -4.28 4.90 30.68 0.15 -4.13 16 14 C 0.18 8.32 4.84 86.36 0.42 8.73 16 15 N -0.61 -28.99 2.99 -699.10 -2.09 -31.08 16 16 C -0.26 -13.83 9.59 84.03 0.81 -13.02 16 17 H 0.06 3.31 7.89 -2.91 -0.02 3.29 16 18 C -0.05 -2.77 4.91 84.86 0.42 -2.36 16 19 N -0.93 -54.34 11.19 21.65 0.24 -54.10 16 20 Si 0.96 44.63 29.59 68.60 2.03 46.66 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 C 0.14 5.30 6.05 86.36 0.52 5.83 16 25 C -0.11 -3.26 4.14 30.67 0.13 -3.13 16 26 C -0.11 -2.78 4.90 30.69 0.15 -2.63 16 27 C 0.11 2.59 5.97 86.38 0.52 3.11 16 28 C 0.06 1.04 5.62 72.36 0.41 1.44 16 29 O -0.40 -8.86 11.22 -148.98 -1.67 -10.53 16 30 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 1.61 6.82 -2.39 -0.02 1.59 16 34 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.10 1.56 4.46 -2.39 -0.01 1.55 16 36 H 0.09 1.57 6.73 -2.39 -0.02 1.56 16 37 H 0.07 2.22 4.98 -2.39 -0.01 2.21 16 38 H 0.06 1.56 7.78 -2.39 -0.02 1.54 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.01 0.29 6.66 -2.39 -0.02 0.28 16 42 H 0.04 2.36 6.03 -2.39 -0.01 2.34 16 43 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 44 H 0.03 0.95 6.72 -2.39 -0.02 0.94 16 45 H 0.05 1.73 7.93 -2.39 -0.02 1.71 16 46 H 0.08 1.92 5.00 -2.39 -0.01 1.91 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.08 1.69 6.66 -2.39 -0.02 1.67 16 51 H 0.08 1.97 7.00 -2.39 -0.02 1.95 16 52 H 0.09 1.29 7.68 -2.39 -0.02 1.28 16 53 H 0.07 1.59 6.75 -2.39 -0.02 1.58 16 Total: -1.00 -68.43 380.60 2.58 -65.85 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.90 Total: 16.38 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: 5.64 Total: 0.49 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -4.27 Total: -100.73 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -1.72 Total: -28.64 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -68.43 2.58 -65.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957570872.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.260 kcal (2) G-P(sol) polarization free energy of solvation -68.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds