Wall clock time and date at job start Tue Mar 31 2020 21:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 110.45689 * 2 1 4 4 C 1.54480 * 110.62517 * 122.68648 * 2 1 3 5 5 O 1.44423 * 104.80442 * 142.68080 * 4 2 1 6 6 C 1.44426 * 105.27139 * 319.48733 * 5 4 2 7 7 H 1.09005 * 110.46286 * 281.62869 * 6 5 4 8 8 C 1.50706 * 110.36885 * 159.34615 * 6 5 4 9 9 O 1.21274 * 120.00143 * 359.61537 * 8 6 5 10 10 N 1.34778 * 119.99718 * 179.61714 * 8 6 5 11 11 C 1.46922 * 120.64092 * 179.97438 * 10 8 6 12 12 C 1.53186 * 108.90442 * 126.28101 * 11 10 8 13 13 C 1.53342 * 109.17012 * 54.56190 * 12 11 10 14 14 C 1.53025 * 109.43276 * 58.79064 * 13 12 11 15 15 C 1.53193 * 109.33557 * 58.62699 * 14 13 12 16 16 N 1.46931 * 108.77620 * 54.62504 * 15 14 13 17 17 C 1.36939 * 120.63642 * 126.38824 * 16 15 14 18 18 H 1.07997 * 119.99418 * 207.65169 * 17 16 15 19 19 C 1.38810 * 120.00130 * 27.65867 * 17 16 15 20 20 N 1.31616 * 120.00284 * 17.37105 * 19 17 16 21 21 Si 1.86803 * 119.99900 * 197.37799 * 19 17 16 22 22 H 1.48498 * 109.46952 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47149 * 119.99408 * 21 19 17 24 24 H 1.48498 * 109.46925 * 239.99941 * 21 19 17 25 25 C 1.46924 * 118.71974 * 306.36873 * 16 15 14 26 26 C 1.53040 * 109.39716 * 178.81890 * 13 12 11 27 27 C 1.53049 * 109.61235 * 298.77374 * 13 12 11 28 28 C 1.46936 * 120.64006 * 359.97438 * 10 8 6 29 29 C 1.54471 * 104.80758 * 40.51093 * 6 5 4 30 30 H 1.08999 * 109.46977 * 182.60433 * 1 2 3 31 31 H 1.09000 * 109.47261 * 302.60597 * 1 2 3 32 32 H 1.09002 * 109.47081 * 62.60693 * 1 2 3 33 33 H 1.09000 * 110.36943 * 261.50909 * 4 2 1 34 34 H 1.08998 * 110.37470 * 23.84644 * 4 2 1 35 35 H 1.09007 * 109.58320 * 246.14834 * 11 10 8 36 36 H 1.09005 * 109.58411 * 6.42034 * 11 10 8 37 37 H 1.08996 * 109.49397 * 174.64045 * 12 11 10 38 38 H 1.08993 * 109.49364 * 294.73317 * 12 11 10 39 39 H 1.08995 * 109.49943 * 178.58746 * 14 13 12 40 40 H 1.09005 * 109.49611 * 298.67287 * 14 13 12 41 41 H 1.09005 * 109.58739 * 294.84026 * 15 14 13 42 42 H 1.08998 * 109.58755 * 174.42091 * 15 14 13 43 43 H 0.96993 * 120.00496 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.58643 * 293.85243 * 25 16 15 45 45 H 1.08997 * 109.58573 * 173.42709 * 25 16 15 46 46 H 1.08995 * 109.49851 * 61.31555 * 26 13 12 47 47 H 1.09005 * 109.49227 * 181.40501 * 26 13 12 48 48 H 1.09002 * 109.49022 * 301.37555 * 27 13 12 49 49 H 1.08996 * 109.49020 * 181.29460 * 27 13 12 50 50 H 1.08997 * 109.58506 * 353.44383 * 28 10 8 51 51 H 1.08995 * 109.58551 * 113.72938 * 28 10 8 52 52 H 1.09003 * 110.51028 * 94.66346 * 29 6 5 53 53 H 1.08997 * 110.51740 * 217.24013 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0742 -0.7808 1.2168 5 8 3.2435 -1.4685 0.7212 6 6 2.8786 -1.9394 -0.5945 7 1 2.2616 -2.8350 -0.5212 8 6 4.1131 -2.2195 -1.4124 9 8 5.2121 -2.0329 -0.9349 10 7 3.9956 -2.6775 -2.6745 11 6 5.1895 -2.9548 -3.4847 12 6 5.1075 -4.3898 -4.0143 13 6 3.7809 -4.5762 -4.7605 14 6 3.6987 -3.5712 -5.9115 15 6 4.8854 -3.7841 -6.8566 16 7 4.9039 -5.1900 -7.2833 17 6 4.9307 -5.5153 -8.6132 18 1 4.5097 -6.4516 -8.9486 19 6 5.4990 -4.6417 -9.5301 20 7 6.3028 -3.6850 -9.1168 21 14 5.1228 -4.8238 -11.3508 22 1 4.1989 -5.9686 -11.5532 23 1 4.4864 -3.5790 -11.8517 24 1 6.3843 -5.0689 -12.0948 25 6 4.8934 -6.2399 -6.2556 26 6 3.7066 -5.9998 -5.3173 27 6 2.6134 -4.3451 -3.7983 28 6 2.6710 -2.9092 -3.2668 29 6 2.0714 -0.7799 -1.2191 30 1 -0.3633 -1.0266 0.0467 31 1 -0.3634 0.5538 0.8657 32 1 -0.3633 0.4728 -0.9125 33 1 2.3491 -0.0932 2.0167 34 1 1.3332 -1.4980 1.5697 35 1 5.2327 -2.2581 -4.3219 36 1 6.0824 -2.8428 -2.8697 37 1 5.9397 -4.5750 -4.6935 38 1 5.1561 -5.0890 -3.1796 39 1 2.7674 -3.7194 -6.4581 40 1 3.7292 -2.5574 -5.5122 41 1 5.8138 -3.5480 -6.3364 42 1 4.7785 -3.1389 -7.7285 43 1 6.6997 -3.0744 -9.7574 44 1 5.8223 -6.2034 -5.6864 45 1 4.7919 -7.2155 -6.7310 46 1 3.7425 -6.7144 -4.4951 47 1 2.7752 -6.1262 -5.8694 48 1 2.6846 -5.0446 -2.9654 49 1 1.6719 -4.5005 -4.3249 50 1 1.9017 -2.7694 -2.5074 51 1 2.5087 -2.2074 -4.0849 52 1 2.7201 -0.1441 -1.8217 53 1 1.2505 -1.1674 -1.8224 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957581444.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:28 Heat of formation + Delta-G solvation = -81.171344 kcal Electronic energy + Delta-G solvation = -31377.947527 eV Core-core repulsion = 27441.921466 eV Total energy + Delta-G solvation = -3936.026061 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.96355 -40.71154 -39.36477 -37.39322 -35.24558 -34.48521 -33.07678 -32.61459 -31.52862 -30.90345 -29.36730 -27.16517 -26.74827 -25.45921 -24.52434 -23.96853 -23.43289 -22.08459 -21.40534 -20.61697 -19.31471 -18.65702 -17.87906 -17.50551 -17.17869 -16.83753 -16.31599 -16.06248 -15.88021 -15.58385 -15.34830 -15.21893 -15.08244 -14.89760 -14.88157 -14.56501 -14.30632 -14.03211 -13.85557 -13.47325 -13.19958 -13.14792 -12.95637 -12.88840 -12.76741 -12.65107 -12.54048 -12.22843 -12.18605 -12.08496 -11.99242 -11.76090 -11.71575 -11.66834 -11.56367 -11.16717 -11.04647 -10.99862 -10.90077 -10.59812 -10.46699 -9.63098 -8.61060 -7.84494 -5.28602 1.45423 1.47631 1.48346 1.57757 1.75098 2.52468 2.96776 3.28309 3.29809 3.58505 3.74093 3.75512 3.82014 3.84799 3.88623 3.93895 4.13985 4.15988 4.21493 4.31765 4.34033 4.49952 4.55054 4.59837 4.62841 4.66511 4.68229 4.73165 4.78200 4.78974 4.85719 4.86980 4.88932 4.92416 5.05293 5.06724 5.10875 5.13713 5.16737 5.25706 5.34756 5.38407 5.41304 5.44601 5.48196 5.57697 5.60982 5.69461 5.76682 5.88494 6.37006 6.42164 7.08327 7.18823 7.92004 8.42555 9.20946 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.002668 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.041108 B =10490.733381 C =10706.868349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 H 0.080 0.920 4 C 0.039 3.961 5 O -0.386 6.386 6 C 0.062 3.938 7 H 0.122 0.878 8 C 0.511 3.489 9 O -0.583 6.583 10 N -0.596 5.596 11 C 0.118 3.882 12 C -0.113 4.113 13 C -0.043 4.043 14 C -0.117 4.117 15 C 0.179 3.821 16 N -0.608 5.608 17 C -0.257 4.257 18 H 0.064 0.936 19 C -0.052 4.052 20 N -0.935 5.935 21 Si 0.963 3.037 22 H -0.266 1.266 23 H -0.290 1.290 24 H -0.296 1.296 25 C 0.138 3.862 26 C -0.109 4.109 27 C -0.117 4.117 28 C 0.098 3.902 29 C -0.139 4.139 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.065 0.935 41 H -0.005 1.005 42 H 0.045 0.955 43 H 0.248 0.752 44 H 0.011 0.989 45 H 0.046 0.954 46 H 0.075 0.925 47 H 0.061 0.939 48 H 0.075 0.925 49 H 0.096 0.904 50 H 0.116 0.884 51 H 0.082 0.918 52 H 0.065 0.935 53 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.523 4.759 18.738 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.141 4.141 3 H 0.099 0.901 4 C -0.037 4.037 5 O -0.305 6.305 6 C 0.002 3.998 7 H 0.139 0.861 8 C 0.300 3.700 9 O -0.462 6.462 10 N -0.330 5.330 11 C -0.005 4.005 12 C -0.151 4.151 13 C -0.043 4.043 14 C -0.155 4.155 15 C 0.054 3.946 16 N -0.332 5.332 17 C -0.387 4.387 18 H 0.082 0.918 19 C -0.248 4.248 20 N -0.581 5.581 21 Si 0.792 3.208 22 H -0.191 1.191 23 H -0.217 1.217 24 H -0.223 1.223 25 C 0.013 3.987 26 C -0.148 4.148 27 C -0.154 4.154 28 C -0.023 4.023 29 C -0.177 4.177 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.013 0.987 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.028 0.972 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.114 0.886 50 H 0.134 0.866 51 H 0.101 0.899 52 H 0.084 0.916 53 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -16.673 4.918 19.004 25.755 hybrid contribution 0.884 0.071 -1.475 1.721 sum -15.789 4.989 17.529 24.113 Atomic orbital electron populations 1.21808 0.91638 1.03170 1.03049 1.22524 0.98267 0.99963 0.93300 0.90127 1.23848 0.87112 0.95626 0.97123 1.89252 1.37301 1.74493 1.29415 1.22968 0.92376 1.00430 0.84063 0.86072 1.20928 0.90886 0.76360 0.81846 1.90679 1.30099 1.53899 1.71550 1.48092 1.08524 1.64039 1.12299 1.21458 0.88012 0.96964 0.94026 1.21922 0.98645 0.95421 0.99107 1.20412 0.94553 0.95261 0.94124 1.22097 0.99060 0.98228 0.96156 1.20571 0.93382 0.85293 0.95381 1.44311 1.85937 1.01525 1.01441 1.19529 1.30409 1.04797 0.84005 0.91827 1.25743 0.97289 0.99808 1.01918 1.70197 1.32484 1.21362 1.34087 0.85270 0.77189 0.77517 0.80863 1.19080 1.21660 1.22304 1.21082 0.95778 0.91545 0.90301 1.21898 0.98605 0.96007 0.98298 1.21974 0.98572 0.96172 0.98728 1.22242 0.82750 0.97650 0.99640 1.23162 1.00143 0.95541 0.98836 0.91174 0.91480 0.91417 0.88289 0.89829 0.91580 0.91491 0.92398 0.91730 0.92613 0.91645 0.98686 0.93651 0.94321 0.97158 0.93585 0.90670 0.92047 0.90664 0.88565 0.86615 0.89946 0.91648 0.86128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 8.98 71.98 0.65 -0.18 16 2 C -0.12 -1.36 3.71 -9.77 -0.04 -1.39 16 3 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 4 C 0.04 0.55 7.19 72.49 0.52 1.07 16 5 O -0.39 -9.46 10.91 -130.60 -1.42 -10.89 16 6 C 0.06 1.21 2.76 30.35 0.08 1.30 16 7 H 0.12 1.65 7.58 -2.38 -0.02 1.63 16 8 C 0.51 14.42 7.02 87.66 0.62 15.03 16 9 O -0.58 -22.73 15.96 15.37 0.25 -22.48 16 10 N -0.60 -14.74 2.97 -818.84 -2.43 -17.17 16 11 C 0.12 3.58 5.95 86.36 0.51 4.10 16 12 C -0.11 -3.44 4.15 30.77 0.13 -3.31 16 13 C -0.04 -1.20 0.51 -52.03 -0.03 -1.22 16 14 C -0.12 -3.90 4.14 30.67 0.13 -3.78 16 15 C 0.18 8.32 4.85 86.36 0.42 8.74 16 16 N -0.61 -29.85 2.99 -699.10 -2.09 -31.94 16 17 C -0.26 -14.04 9.59 84.03 0.81 -13.23 16 18 H 0.06 3.41 7.89 -2.91 -0.02 3.39 16 19 C -0.05 -2.93 4.91 84.86 0.42 -2.51 16 20 N -0.93 -55.49 11.19 21.65 0.24 -55.25 16 21 Si 0.96 44.87 29.59 68.60 2.03 46.90 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 24 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 25 C 0.14 5.57 6.05 86.36 0.52 6.09 16 26 C -0.11 -3.29 4.90 30.67 0.15 -3.14 16 27 C -0.12 -2.17 4.90 30.68 0.15 -2.02 16 28 C 0.10 1.65 5.25 86.37 0.45 2.10 16 29 C -0.14 -1.85 5.18 31.61 0.16 -1.69 16 30 H 0.07 0.30 8.09 -2.39 -0.02 0.28 16 31 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 0.82 7.83 -2.39 -0.02 0.80 16 35 H 0.07 2.11 6.73 -2.38 -0.02 2.09 16 36 H 0.07 2.30 7.00 -2.38 -0.02 2.29 16 37 H 0.06 2.15 5.01 -2.39 -0.01 2.14 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 1.87 8.14 -2.39 -0.02 1.86 16 40 H 0.07 1.98 4.99 -2.38 -0.01 1.97 16 41 H 0.00 -0.24 6.72 -2.38 -0.02 -0.26 16 42 H 0.05 2.45 6.03 -2.39 -0.01 2.43 16 43 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.01 0.44 6.66 -2.39 -0.02 0.42 16 45 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 48 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 50 H 0.12 1.13 4.47 -2.39 -0.01 1.12 16 51 H 0.08 1.36 6.67 -2.39 -0.02 1.35 16 52 H 0.06 1.11 7.86 -2.39 -0.02 1.10 16 53 H 0.12 0.85 6.44 -2.39 -0.02 0.83 16 Total: -1.00 -75.08 382.63 3.11 -71.97 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: 0.89 Total: 12.93 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: 5.65 Total: 5.94 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -4.29 Total: -104.37 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.18 Total: -33.37 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -75.08 3.11 -71.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957581444.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.204 kcal (2) G-P(sol) polarization free energy of solvation -75.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds