Wall clock time and date at job start Tue Mar 31 2020 21:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 110.98624 * 2 1 4 4 C 1.54944 * 111.12965 * 235.80125 * 2 1 3 5 5 O 1.43649 * 105.13649 * 205.59734 * 4 2 1 6 6 C 1.43238 * 109.96977 * 24.42232 * 5 4 2 7 7 H 1.08995 * 109.82952 * 238.68325 * 6 5 4 8 8 C 1.50700 * 109.82973 * 117.80575 * 6 5 4 9 9 O 1.21283 * 119.99911 * 356.45088 * 8 6 5 10 10 N 1.34773 * 120.00317 * 176.45198 * 8 6 5 11 11 C 1.46925 * 120.64142 * 359.72026 * 10 8 6 12 12 C 1.53618 * 108.54176 * 126.32674 * 11 10 8 13 13 C 1.53046 * 109.26141 * 54.86464 * 12 11 10 14 14 C 1.53029 * 109.43876 * 58.57537 * 13 12 11 15 15 C 1.53191 * 109.33851 * 181.23207 * 14 13 12 16 16 N 1.46933 * 108.77705 * 305.37423 * 15 14 13 17 17 C 1.36935 * 120.64291 * 233.61380 * 16 15 14 18 18 H 1.07996 * 120.00444 * 27.68652 * 17 16 15 19 19 C 1.38814 * 119.99984 * 207.69042 * 17 16 15 20 20 N 1.31621 * 119.99863 * 17.36878 * 19 17 16 21 21 Si 1.86796 * 120.00108 * 197.36421 * 19 17 16 22 22 H 1.48502 * 109.47227 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46989 * 120.00056 * 21 19 17 24 24 H 1.48495 * 109.47677 * 240.00212 * 21 19 17 25 25 C 1.46929 * 118.71542 * 53.63646 * 16 15 14 26 26 C 1.53049 * 109.39294 * 178.60045 * 13 12 11 27 27 C 1.53030 * 109.54768 * 298.56774 * 13 12 11 28 28 C 1.46930 * 120.64864 * 180.02562 * 10 8 6 29 29 C 1.54380 * 107.59027 * 358.29088 * 6 5 4 30 30 H 1.09003 * 109.47457 * 182.74344 * 1 2 3 31 31 H 1.08997 * 109.47709 * 302.74943 * 1 2 3 32 32 H 1.09007 * 109.47144 * 62.75097 * 1 2 3 33 33 H 1.08997 * 110.31095 * 86.67611 * 4 2 1 34 34 H 1.09000 * 110.38866 * 324.55066 * 4 2 1 35 35 H 1.09005 * 109.59026 * 246.15687 * 11 10 8 36 36 H 1.09001 * 109.59252 * 6.58294 * 11 10 8 37 37 H 1.09003 * 109.63002 * 294.86653 * 12 11 10 38 38 H 1.09007 * 109.45182 * 174.75568 * 12 11 10 39 39 H 1.08998 * 109.49486 * 301.19398 * 14 13 12 40 40 H 1.09007 * 109.49448 * 61.26922 * 14 13 12 41 41 H 1.08991 * 109.58670 * 185.58798 * 15 14 13 42 42 H 1.08995 * 109.69962 * 65.23056 * 15 14 13 43 43 H 0.97001 * 120.00037 * 180.02562 * 20 19 17 44 44 H 1.08997 * 109.58792 * 186.56711 * 25 16 15 45 45 H 1.09001 * 109.58614 * 66.14502 * 25 16 15 46 46 H 1.09001 * 109.49458 * 298.69506 * 26 13 12 47 47 H 1.09001 * 109.48978 * 58.77494 * 26 13 12 48 48 H 1.09001 * 109.48767 * 301.33481 * 27 13 12 49 49 H 1.09000 * 109.51719 * 181.27335 * 27 13 12 50 50 H 1.09004 * 109.58492 * 353.40482 * 28 10 8 51 51 H 1.08995 * 109.58927 * 113.68381 * 28 10 8 52 52 H 1.09003 * 110.84772 * 96.83636 * 29 6 5 53 53 H 1.09000 * 110.84768 * 220.44612 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9203 1.0178 0.0000 4 6 2.0885 -0.8123 -1.1954 5 8 3.3902 -1.2511 -0.7752 6 6 3.4519 -1.3000 0.6550 7 1 4.2482 -0.6477 1.0133 8 6 3.7075 -2.7145 1.1077 9 8 3.7624 -3.6113 0.2930 10 7 3.8751 -2.9830 2.4177 11 6 3.8174 -1.9066 3.4161 12 6 2.7871 -2.2902 4.4890 13 6 3.1451 -3.6622 5.0651 14 6 4.5543 -3.6131 5.6595 15 6 4.9221 -4.9954 6.2077 16 7 3.8824 -5.4206 7.1549 17 6 4.2128 -5.8111 8.4251 18 1 5.1000 -5.4165 8.8978 19 6 3.4075 -6.7144 9.1051 20 7 2.5404 -7.4510 8.4432 21 14 3.5544 -6.8847 10.9595 22 1 4.5944 -5.9511 11.4615 23 1 2.2507 -6.5587 11.5913 24 1 3.9345 -8.2792 11.3001 25 6 2.4812 -5.4190 6.7126 26 6 2.1405 -4.0320 6.1590 27 6 3.0972 -4.7127 3.9533 28 6 4.1256 -4.3568 2.8746 29 6 2.0905 -0.8144 1.1976 30 1 -0.3634 -1.0265 0.0492 31 1 -0.3634 0.5559 0.8643 32 1 -0.3634 0.4706 -0.9137 33 1 2.1696 -0.1787 -2.0785 34 1 1.4490 -1.6702 -1.4034 35 1 4.7979 -1.7813 3.8754 36 1 3.5159 -0.9767 2.9340 37 1 1.7928 -2.3307 4.0442 38 1 2.7990 -1.5467 5.2861 39 1 5.2661 -3.3279 4.8848 40 1 4.5831 -2.8819 6.4674 41 1 5.8828 -4.9417 6.7197 42 1 4.9844 -5.7111 5.3880 43 1 1.9774 -8.0819 8.9184 44 1 1.8310 -5.6449 7.5577 45 1 2.3435 -6.1678 5.9325 46 1 2.1908 -3.2971 6.9624 47 1 1.1345 -4.0447 5.7396 48 1 2.1000 -4.7315 3.5135 49 1 3.3301 -5.6932 4.3684 50 1 4.0275 -5.0448 2.0349 51 1 5.1316 -4.4266 3.2884 52 1 1.4419 -1.6591 1.4299 53 1 2.2262 -0.1766 2.0710 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957581445.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:32 Heat of formation + Delta-G solvation = -81.286021 kcal Electronic energy + Delta-G solvation = -31483.552781 eV Core-core repulsion = 27547.521748 eV Total energy + Delta-G solvation = -3936.031033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.99524 -40.72552 -39.27984 -37.38723 -35.21659 -34.50617 -33.05645 -32.68994 -31.62926 -30.84197 -29.38522 -27.32571 -26.75026 -25.34000 -24.57869 -23.84351 -23.29405 -22.17045 -21.65415 -20.35721 -19.18378 -18.81238 -18.16106 -17.49387 -16.91723 -16.84024 -16.72770 -16.16824 -15.75979 -15.63376 -15.23230 -15.16683 -15.01739 -14.90083 -14.65954 -14.51102 -14.39649 -13.96941 -13.88600 -13.43354 -13.21594 -13.14988 -13.03581 -12.90372 -12.73788 -12.64393 -12.54764 -12.21242 -12.19511 -12.12842 -12.07310 -11.93597 -11.74563 -11.64820 -11.55556 -11.24606 -11.09137 -11.06457 -10.87960 -10.48489 -10.29566 -9.60469 -8.61782 -7.85138 -5.29466 1.45157 1.47264 1.52478 1.57500 1.85006 2.52023 2.87315 3.28125 3.29481 3.49897 3.72081 3.73755 3.83194 3.85137 3.85554 3.99122 4.10700 4.15377 4.26329 4.30832 4.35849 4.49458 4.53000 4.57443 4.63958 4.66929 4.70428 4.74698 4.77260 4.81635 4.82423 4.83783 4.88545 4.94236 5.00862 5.05393 5.08611 5.11573 5.20209 5.23578 5.31704 5.37053 5.40075 5.46056 5.49779 5.59325 5.63370 5.69387 5.85268 5.87962 6.41367 6.41515 7.13128 7.17806 7.91091 8.41818 9.20395 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026549 B = 0.002646 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.407331 B =10580.414442 C =10924.820164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 H 0.113 0.887 4 C 0.042 3.958 5 O -0.384 6.384 6 C 0.067 3.933 7 H 0.134 0.866 8 C 0.493 3.507 9 O -0.586 6.586 10 N -0.598 5.598 11 C 0.097 3.903 12 C -0.115 4.115 13 C -0.042 4.042 14 C -0.110 4.110 15 C 0.139 3.861 16 N -0.608 5.608 17 C -0.257 4.257 18 H 0.065 0.935 19 C -0.054 4.054 20 N -0.936 5.936 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.290 1.290 24 H -0.295 1.295 25 C 0.178 3.822 26 C -0.116 4.116 27 C -0.113 4.113 28 C 0.119 3.881 29 C -0.139 4.139 30 H 0.046 0.954 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.046 0.954 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.046 0.954 42 H 0.010 0.990 43 H 0.248 0.752 44 H 0.045 0.955 45 H -0.006 1.006 46 H 0.056 0.944 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.056 0.944 50 H 0.064 0.936 51 H 0.076 0.924 52 H 0.069 0.931 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.397 21.817 -14.623 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.133 4.133 3 H 0.131 0.869 4 C -0.034 4.034 5 O -0.303 6.303 6 C 0.007 3.993 7 H 0.151 0.849 8 C 0.282 3.718 9 O -0.466 6.466 10 N -0.332 5.332 11 C -0.024 4.024 12 C -0.153 4.153 13 C -0.042 4.042 14 C -0.149 4.149 15 C 0.014 3.986 16 N -0.332 5.332 17 C -0.387 4.387 18 H 0.083 0.917 19 C -0.249 4.249 20 N -0.583 5.583 21 Si 0.792 3.208 22 H -0.190 1.190 23 H -0.217 1.217 24 H -0.223 1.223 25 C 0.053 3.947 26 C -0.155 4.155 27 C -0.151 4.151 28 C -0.004 4.004 29 C -0.177 4.177 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.135 0.865 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.028 0.972 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.012 0.988 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.074 0.926 50 H 0.083 0.917 51 H 0.094 0.906 52 H 0.088 0.912 53 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.279 21.187 -15.131 26.135 hybrid contribution -0.217 -1.515 1.170 1.927 sum -2.497 19.673 -13.961 24.252 Atomic orbital electron populations 1.21679 0.92638 1.02060 1.03461 1.22876 0.97627 1.00377 0.92440 0.86888 1.23750 0.83097 0.97551 0.99013 1.88489 1.33655 1.88630 1.19502 1.22833 1.02007 0.91655 0.82845 0.84899 1.21760 0.75721 0.92391 0.81915 1.90668 1.52684 1.49373 1.53875 1.48179 1.70017 1.09058 1.05939 1.22352 1.01032 0.89809 0.89222 1.22026 0.99003 0.95946 0.98372 1.20332 0.95369 0.95133 0.93347 1.21987 0.96025 0.97192 0.99694 1.21084 0.91501 0.94424 0.91634 1.44301 1.01942 1.76737 1.10187 1.19544 1.09756 1.18441 0.90960 0.91695 1.25764 1.00590 0.96193 1.02333 1.70206 1.27486 1.25375 1.35218 0.85255 0.77394 0.77055 0.81053 1.18986 1.21726 1.22270 1.20561 0.85505 0.92603 0.96047 1.22025 0.97877 0.98038 0.97595 1.21859 0.98513 0.99394 0.95335 1.21477 0.99034 0.83178 0.96704 1.23369 0.92811 1.00928 1.00579 0.93514 0.90626 0.91116 0.87651 0.93574 0.89445 0.86490 0.91189 0.88654 0.90268 0.91921 0.93584 0.97176 0.94327 0.93620 0.98848 0.92564 0.92267 0.92800 0.92585 0.91724 0.90580 0.91193 0.85345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.31 71.98 0.67 -0.52 16 2 C -0.11 -1.14 3.69 -9.34 -0.03 -1.17 16 3 H 0.11 0.68 8.14 -2.38 -0.02 0.67 16 4 C 0.04 0.68 7.26 72.65 0.53 1.21 16 5 O -0.38 -9.10 10.56 -130.19 -1.38 -10.48 16 6 C 0.07 1.24 3.06 30.32 0.09 1.33 16 7 H 0.13 1.66 7.72 -2.39 -0.02 1.64 16 8 C 0.49 13.21 6.97 87.66 0.61 13.82 16 9 O -0.59 -22.06 15.94 15.75 0.25 -21.81 16 10 N -0.60 -13.78 2.97 -818.00 -2.43 -16.21 16 11 C 0.10 1.46 5.52 86.51 0.48 1.94 16 12 C -0.12 -2.11 4.92 30.82 0.15 -1.96 16 13 C -0.04 -1.15 0.51 -52.13 -0.03 -1.17 16 14 C -0.11 -3.21 4.15 30.67 0.13 -3.08 16 15 C 0.14 5.52 6.04 86.36 0.52 6.04 16 16 N -0.61 -29.88 2.99 -699.12 -2.09 -31.97 16 17 C -0.26 -14.03 9.59 84.03 0.81 -13.22 16 18 H 0.07 3.47 7.89 -2.91 -0.02 3.45 16 19 C -0.05 -3.01 4.91 84.86 0.42 -2.60 16 20 N -0.94 -55.90 11.19 21.65 0.24 -55.65 16 21 Si 0.96 44.97 29.59 68.60 2.03 47.00 16 22 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 25 C 0.18 8.43 4.84 86.36 0.42 8.84 16 26 C -0.12 -4.03 4.90 30.67 0.15 -3.88 16 27 C -0.11 -3.45 4.15 30.68 0.13 -3.32 16 28 C 0.12 3.34 5.96 86.37 0.51 3.86 16 29 C -0.14 -1.64 4.87 31.85 0.15 -1.48 16 30 H 0.05 0.53 8.10 -2.39 -0.02 0.51 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 0.88 8.03 -2.39 -0.02 0.86 16 35 H 0.09 1.19 6.66 -2.38 -0.02 1.18 16 36 H 0.12 0.98 4.03 -2.39 -0.01 0.97 16 37 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 38 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 39 H 0.08 1.90 4.97 -2.39 -0.01 1.89 16 40 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 42 H 0.01 0.43 6.74 -2.39 -0.02 0.41 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.05 2.50 6.03 -2.39 -0.01 2.48 16 45 H -0.01 -0.33 6.67 -2.39 -0.02 -0.35 16 46 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.06 2.10 4.99 -2.39 -0.01 2.09 16 50 H 0.06 2.11 7.01 -2.38 -0.02 2.10 16 51 H 0.08 2.06 6.73 -2.39 -0.02 2.05 16 52 H 0.07 1.08 7.71 -2.39 -0.02 1.06 16 53 H 0.13 0.65 6.69 -2.39 -0.02 0.64 16 Total: -1.00 -75.60 382.82 3.23 -72.37 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.89 Total: 12.13 kcal Atomic # 6 Polarization: -1.08 SS G_CDS: 5.71 Total: 4.62 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -4.28 Total: -103.83 kcal Atomic # 8 Polarization: -31.16 SS G_CDS: -1.12 Total: -32.29 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -75.60 3.23 -72.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957581445.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.914 kcal (2) G-P(sol) polarization free energy of solvation -75.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds