Wall clock time and date at job start Tue Mar 31 2020 21:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 110.43612 * 2 1 4 4 C 1.54101 * 110.60032 * 122.61728 * 2 1 3 5 5 O 1.43747 * 107.29269 * 116.70182 * 4 2 1 6 6 C 1.44386 * 106.97537 * 26.51269 * 5 4 2 7 7 H 1.08998 * 110.75218 * 78.50175 * 6 5 4 8 8 C 1.50696 * 110.62084 * 201.44094 * 6 5 4 9 9 O 1.21285 * 119.99896 * 359.06732 * 8 6 5 10 10 N 1.34770 * 120.00134 * 179.07629 * 8 6 5 11 11 C 1.46932 * 120.64427 * 359.71171 * 10 8 6 12 12 C 1.53617 * 108.53912 * 126.33108 * 11 10 8 13 13 C 1.53053 * 109.26074 * 54.86975 * 12 11 10 14 14 C 1.53022 * 109.43845 * 58.57155 * 13 12 11 15 15 C 1.53195 * 109.33328 * 181.23088 * 14 13 12 16 16 N 1.46931 * 108.78300 * 305.37447 * 15 14 13 17 17 C 1.36929 * 120.64357 * 233.66199 * 16 15 14 18 18 H 1.07996 * 120.00179 * 152.61271 * 17 16 15 19 19 C 1.38806 * 119.99952 * 332.60141 * 17 16 15 20 20 N 1.31626 * 119.99998 * 159.36476 * 19 17 16 21 21 Si 1.86805 * 120.00406 * 339.36536 * 19 17 16 22 22 H 1.48496 * 109.47131 * 92.90922 * 21 19 17 23 23 H 1.48496 * 109.47394 * 212.91096 * 21 19 17 24 24 H 1.48500 * 109.46617 * 332.91351 * 21 19 17 25 25 C 1.46932 * 118.71153 * 53.63392 * 16 15 14 26 26 C 1.53045 * 109.38938 * 178.60081 * 13 12 11 27 27 C 1.53036 * 109.54419 * 298.56246 * 13 12 11 28 28 C 1.46937 * 120.64487 * 180.02562 * 10 8 6 29 29 C 1.54815 * 110.48569 * 237.45231 * 2 1 3 30 30 H 1.09001 * 109.47070 * 182.54809 * 1 2 3 31 31 H 1.09000 * 109.46611 * 302.54814 * 1 2 3 32 32 H 1.08992 * 109.47309 * 62.54583 * 1 2 3 33 33 H 1.08995 * 109.88195 * 236.12351 * 4 2 1 34 34 H 1.08996 * 109.87907 * 357.27933 * 4 2 1 35 35 H 1.08997 * 109.58605 * 246.16485 * 11 10 8 36 36 H 1.08999 * 109.58627 * 6.59028 * 11 10 8 37 37 H 1.08992 * 109.63405 * 294.87163 * 12 11 10 38 38 H 1.08998 * 109.42781 * 174.74015 * 12 11 10 39 39 H 1.09002 * 109.49770 * 301.18720 * 14 13 12 40 40 H 1.08997 * 109.49585 * 61.27686 * 14 13 12 41 41 H 1.08998 * 109.58535 * 185.58354 * 15 14 13 42 42 H 1.09000 * 109.69770 * 65.23320 * 15 14 13 43 43 H 0.96998 * 119.99633 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58315 * 186.56898 * 25 16 15 45 45 H 1.09002 * 109.69770 * 66.21712 * 25 16 15 46 46 H 1.08997 * 109.49166 * 298.68724 * 26 13 12 47 47 H 1.09000 * 109.49664 * 58.77209 * 26 13 12 48 48 H 1.09000 * 109.49056 * 301.34159 * 27 13 12 49 49 H 1.09001 * 109.51282 * 181.27431 * 27 13 12 50 50 H 1.09003 * 109.58093 * 353.39439 * 28 10 8 51 51 H 1.08996 * 109.59170 * 113.81999 * 28 10 8 52 52 H 1.08999 * 110.90720 * 102.11210 * 29 2 1 53 53 H 1.08995 * 110.93424 * 338.52006 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0722 -0.7775 1.2150 5 8 2.7999 -1.9089 0.7082 6 6 3.2681 -1.5527 -0.6104 7 1 4.1474 -0.9116 -0.5478 8 6 3.5707 -2.7885 -1.4179 9 8 3.4241 -3.8866 -0.9241 10 7 4.0045 -2.6737 -2.6887 11 6 4.1814 -1.3507 -3.3030 12 6 5.6107 -1.2570 -3.8579 13 6 5.8608 -2.4294 -4.8094 14 6 4.8349 -2.3920 -5.9442 15 6 5.0680 -3.5838 -6.8781 16 7 6.4666 -3.5656 -7.3283 17 6 6.7706 -3.5986 -8.6630 18 1 7.6902 -3.1579 -9.0185 19 6 5.8969 -4.1987 -9.5592 20 7 5.9555 -3.8956 -10.8388 21 14 4.6377 -5.4366 -8.9495 22 1 3.3614 -4.7385 -8.6514 23 1 4.4070 -6.4645 -9.9961 24 1 5.1439 -6.0908 -7.7162 25 6 7.5325 -3.5106 -6.3186 26 6 7.2722 -2.3196 -5.3910 27 6 5.7264 -3.7477 -4.0439 28 6 4.3033 -3.8692 -3.4891 29 6 2.0719 -0.7802 -1.2225 30 1 -0.3633 -1.0267 0.0457 31 1 -0.3632 0.5529 0.8663 32 1 -0.3633 0.4738 -0.9118 33 1 2.7375 -0.1394 1.7966 34 1 1.2443 -1.1177 1.8368 35 1 3.4630 -1.2249 -4.1130 36 1 4.0279 -0.5757 -2.5520 37 1 6.3259 -1.2964 -3.0363 38 1 5.7288 -0.3180 -4.3988 39 1 3.8293 -2.4477 -5.5275 40 1 4.9460 -1.4637 -6.5046 41 1 4.4056 -3.5074 -7.7404 42 1 4.8679 -4.5131 -6.3448 43 1 5.3447 -4.3147 -11.4649 44 1 8.4966 -3.3861 -6.8115 45 1 7.5357 -4.4327 -5.7372 46 1 7.3614 -1.3920 -5.9564 47 1 8.0010 -2.3237 -4.5805 48 1 6.4407 -3.7647 -3.2208 49 1 5.9268 -4.5815 -4.7168 50 1 4.2305 -4.7570 -2.8608 51 1 3.5944 -3.9434 -4.3137 52 1 2.4081 -0.0968 -2.0022 53 1 1.3208 -1.4691 -1.6089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957581446.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:37 Heat of formation + Delta-G solvation = -77.476333 kcal Electronic energy + Delta-G solvation = -31495.096928 eV Core-core repulsion = 27559.231095 eV Total energy + Delta-G solvation = -3935.865833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.99404 -40.79331 -39.43515 -37.53284 -35.27257 -34.47715 -33.41305 -32.68227 -31.92281 -31.00679 -29.54793 -27.28187 -26.73319 -25.42694 -24.41985 -24.33041 -23.63888 -22.08402 -21.54211 -20.47774 -19.39289 -18.79311 -18.07721 -17.57359 -17.30744 -17.13485 -16.36991 -16.12379 -15.93915 -15.65606 -15.42909 -15.32057 -15.29443 -15.10962 -14.79235 -14.47321 -14.24832 -14.20482 -13.73310 -13.66017 -13.56335 -13.48429 -13.35795 -13.01514 -12.84929 -12.65688 -12.48254 -12.19589 -12.13492 -12.07934 -12.02577 -11.94001 -11.77689 -11.63045 -11.57510 -11.31378 -11.12818 -10.98811 -10.87842 -10.62480 -10.53816 -9.65139 -8.85986 -8.16168 -5.45647 1.27253 1.39979 1.47498 1.47890 1.73080 2.40780 2.92907 3.07896 3.27101 3.38857 3.55295 3.72190 3.74409 3.80377 3.85635 3.96930 4.06048 4.11289 4.15555 4.24297 4.29841 4.42070 4.43831 4.52433 4.55399 4.58911 4.62675 4.68288 4.69286 4.74951 4.75107 4.82838 4.83913 4.86550 4.92505 5.00683 5.05888 5.07379 5.08996 5.12818 5.16945 5.24981 5.29691 5.34706 5.36747 5.42924 5.55342 5.63666 5.82281 5.89427 6.14206 6.35163 6.95189 7.07761 7.65957 8.06684 9.04084 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.020850 B = 0.002908 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.599769 B = 9624.799252 C = 9854.871411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 H 0.115 0.885 4 C 0.039 3.961 5 O -0.389 6.389 6 C 0.061 3.939 7 H 0.123 0.877 8 C 0.513 3.487 9 O -0.582 6.582 10 N -0.597 5.597 11 C 0.096 3.904 12 C -0.116 4.116 13 C -0.045 4.045 14 C -0.115 4.115 15 C 0.121 3.879 16 N -0.618 5.618 17 C -0.241 4.241 18 H 0.052 0.948 19 C -0.035 4.035 20 N -0.958 5.958 21 Si 0.943 3.057 22 H -0.274 1.274 23 H -0.315 1.315 24 H -0.265 1.265 25 C 0.140 3.860 26 C -0.111 4.111 27 C -0.118 4.118 28 C 0.113 3.887 29 C -0.140 4.140 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.117 0.883 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.042 0.958 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.048 0.952 45 H 0.030 0.970 46 H 0.058 0.942 47 H 0.081 0.919 48 H 0.069 0.931 49 H 0.064 0.936 50 H 0.070 0.930 51 H 0.070 0.930 52 H 0.122 0.878 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.069 13.874 24.343 29.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.137 4.137 3 H 0.133 0.867 4 C -0.038 4.038 5 O -0.308 6.308 6 C 0.001 3.999 7 H 0.141 0.859 8 C 0.302 3.698 9 O -0.461 6.461 10 N -0.330 5.330 11 C -0.026 4.026 12 C -0.154 4.154 13 C -0.045 4.045 14 C -0.154 4.154 15 C -0.004 4.004 16 N -0.342 5.342 17 C -0.371 4.371 18 H 0.070 0.930 19 C -0.230 4.230 20 N -0.605 5.605 21 Si 0.772 3.228 22 H -0.201 1.201 23 H -0.244 1.244 24 H -0.189 1.189 25 C 0.015 3.985 26 C -0.150 4.150 27 C -0.156 4.156 28 C -0.009 4.009 29 C -0.178 4.178 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.135 0.865 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.060 0.940 42 H 0.045 0.955 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.077 0.923 47 H 0.099 0.901 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.089 0.911 51 H 0.088 0.912 52 H 0.140 0.860 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.152 13.072 24.589 29.016 hybrid contribution -0.424 -1.214 -0.772 1.500 sum -8.576 11.858 23.816 27.953 Atomic orbital electron populations 1.21833 0.93446 1.01684 1.03208 1.22570 0.97525 1.00887 0.92690 0.86700 1.23591 0.96069 0.87303 0.96793 1.88994 1.72708 1.39294 1.29767 1.23106 1.00302 0.92678 0.83823 0.85923 1.20841 0.76298 0.90762 0.81905 1.90687 1.54125 1.30173 1.71139 1.48081 1.64827 1.08578 1.11508 1.22384 0.97926 0.82906 0.99340 1.22035 0.96333 0.98326 0.98725 1.20376 0.95039 0.95098 0.93993 1.22026 0.98968 0.98356 0.96047 1.21379 0.85510 0.97046 0.96469 1.44459 1.01422 1.86588 1.01778 1.18877 1.06220 1.29350 0.82688 0.93040 1.25851 1.01237 1.00870 0.95004 1.69963 1.41296 1.45635 1.03617 0.85975 0.79833 0.80020 0.76938 1.20112 1.24393 1.18926 1.21138 0.90747 0.96599 0.89984 1.21908 0.96270 0.98431 0.98398 1.21946 0.95853 0.98432 0.99344 1.21555 0.96872 0.88104 0.94371 1.23404 0.95755 0.99194 0.99435 0.93854 0.90997 0.91284 0.90290 0.89525 0.89658 0.86545 0.90466 0.88745 0.90526 0.92034 0.94014 0.95486 0.93090 0.93318 0.95166 0.92297 0.90096 0.91200 0.91792 0.91111 0.91165 0.85989 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.93 71.98 0.64 -0.58 16 2 C -0.12 -1.02 3.64 -9.80 -0.04 -1.06 16 3 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 4 C 0.04 0.51 7.37 72.35 0.53 1.04 16 5 O -0.39 -8.99 10.80 -130.75 -1.41 -10.41 16 6 C 0.06 1.08 2.79 30.53 0.09 1.16 16 7 H 0.12 1.44 7.63 -2.39 -0.02 1.42 16 8 C 0.51 13.07 7.14 87.66 0.63 13.70 16 9 O -0.58 -21.09 15.98 15.19 0.24 -20.85 16 10 N -0.60 -12.71 2.97 -817.99 -2.43 -15.13 16 11 C 0.10 1.32 5.13 86.50 0.44 1.76 16 12 C -0.12 -1.84 4.92 30.82 0.15 -1.69 16 13 C -0.04 -1.08 0.51 -52.13 -0.03 -1.10 16 14 C -0.12 -3.37 4.14 30.67 0.13 -3.24 16 15 C 0.12 4.85 3.74 86.36 0.32 5.18 16 16 N -0.62 -28.07 2.77 -699.10 -1.94 -30.00 16 17 C -0.24 -13.56 10.04 84.03 0.84 -12.72 16 18 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 19 C -0.04 -2.06 5.23 84.86 0.44 -1.61 16 20 N -0.96 -60.37 13.97 21.65 0.30 -60.07 16 21 Si 0.94 47.01 24.35 68.60 1.67 48.68 16 22 H -0.27 -12.86 6.62 99.48 0.66 -12.20 16 23 H -0.31 -16.11 7.11 99.48 0.71 -15.40 16 24 H -0.26 -12.73 6.64 99.48 0.66 -12.07 16 25 C 0.14 5.12 6.04 86.36 0.52 5.64 16 26 C -0.11 -3.03 4.90 30.67 0.15 -2.88 16 27 C -0.12 -3.01 4.15 30.68 0.13 -2.88 16 28 C 0.11 2.91 5.97 86.37 0.52 3.43 16 29 C -0.14 -1.60 5.32 31.90 0.17 -1.43 16 30 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 1.12 7.70 -2.39 -0.02 1.10 16 35 H 0.09 1.12 6.66 -2.39 -0.02 1.10 16 36 H 0.12 0.85 4.45 -2.39 -0.01 0.84 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.08 1.91 4.97 -2.39 -0.01 1.90 16 40 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.04 1.91 4.49 -2.39 -0.01 1.90 16 42 H 0.03 1.09 5.66 -2.39 -0.01 1.07 16 43 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 44 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 45 H 0.03 1.08 6.67 -2.39 -0.02 1.06 16 46 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.06 1.94 4.99 -2.39 -0.01 1.93 16 50 H 0.07 2.10 7.01 -2.39 -0.02 2.08 16 51 H 0.07 1.82 6.72 -2.39 -0.02 1.81 16 52 H 0.12 0.65 6.33 -2.39 -0.02 0.63 16 53 H 0.07 1.04 7.78 -2.39 -0.02 1.02 16 Total: -1.00 -78.03 376.06 2.89 -75.15 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.80 Total: 9.91 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 5.64 Total: 2.72 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -4.06 Total: -105.20 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -1.17 Total: -31.25 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.67 Total: 48.68 kcal Total: -78.03 2.89 -75.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957581446.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.330 kcal (2) G-P(sol) polarization free energy of solvation -78.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds