Wall clock time and date at job start Tue Mar 31 2020 21:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.46193 * 2 1 4 4 C 1.54483 * 110.50690 * 237.39634 * 2 1 3 5 5 O 1.44426 * 104.80343 * 217.37923 * 4 2 1 6 6 C 1.44420 * 105.27547 * 40.50854 * 5 4 2 7 7 H 1.09008 * 110.37056 * 78.43686 * 6 5 4 8 8 C 1.50707 * 110.37265 * 200.65559 * 6 5 4 9 9 O 1.21280 * 119.99840 * 3.55297 * 8 6 5 10 10 N 1.34779 * 119.99862 * 183.54611 * 8 6 5 11 11 C 1.46926 * 120.64003 * 180.02562 * 10 8 6 12 12 C 1.53180 * 108.77573 * 126.33819 * 11 10 8 13 13 C 1.53050 * 109.33392 * 54.63638 * 12 11 10 14 14 C 1.53026 * 109.44428 * 58.70292 * 13 12 11 15 15 C 1.53183 * 109.33888 * 181.23371 * 14 13 12 16 16 N 1.46934 * 108.78321 * 305.37562 * 15 14 13 17 17 C 1.36926 * 120.64785 * 233.62203 * 16 15 14 18 18 H 1.08005 * 120.00489 * 151.92376 * 17 16 15 19 19 C 1.38814 * 120.00069 * 331.64209 * 17 16 15 20 20 N 1.31621 * 119.99543 * 343.22800 * 19 17 16 21 21 Si 1.86803 * 120.00440 * 163.22825 * 19 17 16 22 22 H 1.48502 * 109.46959 * 60.00179 * 21 19 17 23 23 H 1.48494 * 109.47012 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46830 * 300.00338 * 21 19 17 25 25 C 1.46930 * 118.70671 * 53.88934 * 16 15 14 26 26 C 1.53046 * 109.39287 * 178.73608 * 13 12 11 27 27 C 1.53029 * 109.54604 * 298.69385 * 13 12 11 28 28 C 1.46927 * 120.64391 * 359.97438 * 10 8 6 29 29 C 1.54475 * 104.80557 * 319.48947 * 6 5 4 30 30 H 1.08999 * 109.47456 * 181.15616 * 1 2 3 31 31 H 1.09002 * 109.46619 * 301.14477 * 1 2 3 32 32 H 1.08998 * 109.47342 * 61.14427 * 1 2 3 33 33 H 1.08998 * 110.37018 * 98.54602 * 4 2 1 34 34 H 1.09000 * 110.37537 * 336.20466 * 4 2 1 35 35 H 1.09005 * 109.58452 * 6.54862 * 11 10 8 36 36 H 1.09004 * 109.58452 * 246.12804 * 11 10 8 37 37 H 1.08994 * 109.49613 * 294.67890 * 12 11 10 38 38 H 1.09000 * 109.51718 * 174.60185 * 12 11 10 39 39 H 1.09005 * 109.49427 * 61.27190 * 14 13 12 40 40 H 1.09001 * 109.51742 * 301.21073 * 14 13 12 41 41 H 1.09006 * 109.58798 * 185.58940 * 15 14 13 42 42 H 1.08997 * 109.70346 * 65.23716 * 15 14 13 43 43 H 0.97006 * 119.99683 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.58988 * 65.88744 * 25 16 15 45 45 H 1.09005 * 109.58704 * 186.31199 * 25 16 15 46 46 H 1.09005 * 109.49013 * 298.67486 * 26 13 12 47 47 H 1.08995 * 109.49555 * 58.76473 * 26 13 12 48 48 H 1.09003 * 109.49435 * 181.26302 * 27 13 12 49 49 H 1.09004 * 109.49328 * 301.34037 * 27 13 12 50 50 H 1.09005 * 109.58633 * 353.43662 * 28 10 8 51 51 H 1.08995 * 109.58864 * 113.72109 * 28 10 8 52 52 H 1.09005 * 110.50471 * 142.62257 * 29 6 5 53 53 H 1.08997 * 110.51318 * 265.33229 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0712 -0.7796 -1.2189 5 8 3.2397 -1.4705 -0.7259 6 6 2.8756 -1.9430 0.5894 7 1 2.2579 -2.8379 0.5136 8 6 4.1105 -2.2270 1.4053 9 8 5.2079 -1.9875 0.9478 10 7 3.9954 -2.7470 2.6433 11 6 5.1898 -3.0289 3.4512 12 6 5.0426 -2.3334 4.8081 13 6 3.7271 -2.7664 5.4594 14 6 3.7194 -4.2871 5.6299 15 6 2.3893 -4.7210 6.2536 16 7 2.1857 -3.9729 7.5018 17 6 1.9298 -4.6301 8.6755 18 1 2.2192 -4.1868 9.6169 19 6 1.2930 -5.8634 8.6559 20 7 0.6458 -6.2527 7.5779 21 14 1.3546 -6.9705 10.1592 22 1 0.7421 -6.2689 11.3160 23 1 0.6032 -8.2213 9.8839 24 1 2.7679 -7.3013 10.4727 25 6 2.2563 -2.5058 7.4649 26 6 3.5936 -2.0968 6.8291 27 6 2.5537 -2.3472 4.5711 28 6 2.6730 -3.0420 3.2117 29 6 2.0715 -0.7830 1.2170 30 1 -0.3634 -1.0274 0.0207 31 1 -0.3633 0.5315 0.8796 32 1 -0.3634 0.4959 -0.9000 33 1 2.3463 -0.0912 -2.0179 34 1 1.3284 -1.4950 -1.5721 35 1 6.0746 -2.6493 2.9400 36 1 5.2846 -4.1045 3.6003 37 1 5.0391 -1.2529 4.6646 38 1 5.8764 -2.6120 5.4525 39 1 4.5409 -4.5842 6.2819 40 1 3.8372 -4.7633 4.6565 41 1 2.4175 -5.7893 6.4684 42 1 1.5731 -4.5086 5.5631 43 1 0.2012 -7.1147 7.5641 44 1 1.4310 -2.1151 6.8697 45 1 2.1966 -2.1114 8.4793 46 1 4.4160 -2.4136 7.4705 47 1 3.6217 -1.0139 6.7089 48 1 1.6162 -2.6361 5.0464 49 1 2.5723 -1.2666 4.4297 50 1 1.8966 -2.6709 2.5426 51 1 2.5618 -4.1188 3.3387 52 1 1.2491 -1.1702 1.8187 53 1 2.7220 -0.1496 1.8199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957581447.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:41 Heat of formation + Delta-G solvation = -79.911792 kcal Electronic energy + Delta-G solvation = -31622.797439 eV Core-core repulsion = 27686.825996 eV Total energy + Delta-G solvation = -3935.971442 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.98711 -40.69916 -39.38335 -37.34650 -35.23990 -34.50426 -33.29095 -32.30655 -31.55518 -30.89884 -29.42697 -27.19193 -26.76261 -25.24937 -24.55212 -24.07488 -23.46316 -22.01546 -21.46342 -20.62182 -19.24049 -18.62793 -18.05800 -17.53183 -17.01237 -16.79871 -16.24557 -16.03489 -15.89649 -15.72640 -15.45833 -15.22780 -15.02999 -14.96119 -14.81384 -14.55584 -14.23508 -14.02623 -13.86078 -13.42654 -13.25984 -13.16856 -12.91575 -12.88424 -12.78639 -12.61459 -12.50889 -12.27798 -12.19312 -12.13577 -11.96817 -11.75797 -11.73871 -11.68027 -11.54003 -11.15194 -11.05143 -11.00451 -10.89730 -10.60809 -10.44282 -9.63486 -8.56962 -7.82912 -5.26478 1.46266 1.47395 1.49725 1.55658 1.74914 2.53770 2.95149 3.28023 3.31262 3.56418 3.72436 3.78916 3.83119 3.84233 3.85257 3.95071 4.14269 4.15751 4.18148 4.28902 4.35929 4.48510 4.54141 4.59138 4.63710 4.67154 4.68696 4.73205 4.76939 4.81696 4.83596 4.85483 4.86305 4.90492 5.06078 5.07579 5.09996 5.12572 5.18572 5.23785 5.35584 5.38259 5.39987 5.44498 5.48516 5.59797 5.60544 5.70907 5.74958 5.91289 6.32770 6.44704 7.06262 7.21702 7.94769 8.44689 9.21822 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017916 B = 0.002978 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.466118 B = 9400.518249 C = 9963.172355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.120 4.120 3 H 0.086 0.914 4 C 0.039 3.961 5 O -0.382 6.382 6 C 0.058 3.942 7 H 0.112 0.888 8 C 0.516 3.484 9 O -0.576 6.576 10 N -0.596 5.596 11 C 0.112 3.888 12 C -0.111 4.111 13 C -0.042 4.042 14 C -0.119 4.119 15 C 0.182 3.818 16 N -0.609 5.609 17 C -0.262 4.262 18 H 0.060 0.940 19 C -0.046 4.046 20 N -0.929 5.929 21 Si 0.958 3.042 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.283 1.283 25 C 0.142 3.858 26 C -0.111 4.111 27 C -0.117 4.117 28 C 0.102 3.898 29 C -0.137 4.137 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.041 0.959 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.011 0.989 43 H 0.248 0.752 44 H 0.025 0.975 45 H 0.043 0.957 46 H 0.049 0.951 47 H 0.075 0.925 48 H 0.073 0.927 49 H 0.076 0.924 50 H 0.107 0.893 51 H 0.071 0.929 52 H 0.110 0.890 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.513 12.205 -14.507 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.139 4.139 3 H 0.104 0.896 4 C -0.037 4.037 5 O -0.301 6.301 6 C -0.003 4.003 7 H 0.130 0.870 8 C 0.304 3.696 9 O -0.456 6.456 10 N -0.330 5.330 11 C -0.010 4.010 12 C -0.149 4.149 13 C -0.043 4.043 14 C -0.158 4.158 15 C 0.057 3.943 16 N -0.333 5.333 17 C -0.392 4.392 18 H 0.077 0.923 19 C -0.242 4.242 20 N -0.575 5.575 21 Si 0.787 3.213 22 H -0.203 1.203 23 H -0.220 1.220 24 H -0.209 1.209 25 C 0.017 3.983 26 C -0.150 4.150 27 C -0.155 4.155 28 C -0.019 4.019 29 C -0.175 4.175 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.029 0.971 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.125 0.875 51 H 0.090 0.910 52 H 0.129 0.871 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.196 12.161 -14.868 19.245 hybrid contribution -0.135 -1.027 1.127 1.531 sum 1.060 11.134 -13.740 17.717 Atomic orbital electron populations 1.21818 0.92050 1.02920 1.03085 1.22519 0.97979 1.00144 0.93229 0.89567 1.23847 0.87123 0.95560 0.97167 1.89231 1.37249 1.74292 1.29314 1.22964 0.92842 1.00128 0.84323 0.87034 1.20733 0.90642 0.76406 0.81780 1.90665 1.29755 1.53883 1.71284 1.48079 1.08561 1.61976 1.14335 1.21638 0.87735 1.00463 0.91176 1.21886 0.97718 1.00363 0.94913 1.20326 0.94751 0.94664 0.94515 1.22121 0.98679 0.95572 0.99431 1.20559 0.92286 0.95679 0.85826 1.44275 1.82504 1.00950 1.05524 1.19416 1.30815 1.02132 0.86847 0.92267 1.25663 0.97465 1.01445 0.99599 1.70144 1.36073 1.21194 1.30081 0.85481 0.77394 0.78357 0.80046 1.20346 1.22038 1.20900 1.21149 0.95181 0.83968 0.98019 1.21990 0.97942 0.99529 0.95546 1.21915 0.98939 1.00551 0.94082 1.22046 0.83242 1.01059 0.95587 1.23111 1.00017 0.95546 0.98847 0.91716 0.91589 0.91164 0.87842 0.90248 0.90291 0.90877 0.91297 0.90314 0.93971 0.91734 0.93933 0.97093 0.94244 0.95733 0.93838 0.93231 0.90613 0.90893 0.90573 0.87528 0.91025 0.87139 0.91110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.94 71.98 0.64 -0.65 16 2 C -0.12 -1.57 3.72 -9.78 -0.04 -1.61 16 3 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 4 C 0.04 0.61 7.18 72.49 0.52 1.13 16 5 O -0.38 -9.72 10.91 -130.63 -1.43 -11.14 16 6 C 0.06 1.26 2.74 30.35 0.08 1.34 16 7 H 0.11 1.96 7.68 -2.38 -0.02 1.94 16 8 C 0.52 14.48 6.99 87.66 0.61 15.10 16 9 O -0.58 -21.27 15.97 15.32 0.24 -21.02 16 10 N -0.60 -14.74 2.97 -819.03 -2.43 -17.17 16 11 C 0.11 2.83 5.97 86.36 0.52 3.35 16 12 C -0.11 -2.66 4.90 30.67 0.15 -2.51 16 13 C -0.04 -1.17 0.51 -52.13 -0.03 -1.20 16 14 C -0.12 -4.04 4.14 30.66 0.13 -3.91 16 15 C 0.18 8.04 4.83 86.36 0.42 8.45 16 16 N -0.61 -28.80 2.99 -698.25 -2.08 -30.89 16 17 C -0.26 -14.02 9.58 84.04 0.81 -13.22 16 18 H 0.06 3.14 7.89 -2.91 -0.02 3.12 16 19 C -0.05 -2.50 4.92 84.86 0.42 -2.08 16 20 N -0.93 -52.95 11.20 21.65 0.24 -52.71 16 21 Si 0.96 44.19 29.59 68.60 2.03 46.22 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 C 0.14 5.41 6.07 86.51 0.53 5.94 16 26 C -0.11 -3.35 4.92 30.82 0.15 -3.19 16 27 C -0.12 -2.87 4.14 30.65 0.13 -2.75 16 28 C 0.10 2.25 5.55 86.34 0.48 2.73 16 29 C -0.14 -2.19 5.33 31.61 0.17 -2.03 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 0.97 7.87 -2.39 -0.02 0.95 16 35 H 0.08 2.17 7.01 -2.38 -0.02 2.15 16 36 H 0.07 1.84 6.67 -2.38 -0.02 1.82 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.06 1.99 4.99 -2.39 -0.01 1.98 16 41 H 0.04 2.22 6.07 -2.38 -0.01 2.21 16 42 H 0.01 0.50 6.74 -2.39 -0.02 0.48 16 43 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 44 H 0.02 0.92 6.66 -2.39 -0.02 0.90 16 45 H 0.04 1.69 7.93 -2.38 -0.02 1.67 16 46 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.07 2.13 4.98 -2.39 -0.01 2.12 16 49 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.11 1.78 4.16 -2.38 -0.01 1.77 16 51 H 0.07 1.74 6.74 -2.39 -0.02 1.72 16 52 H 0.11 1.34 6.31 -2.38 -0.02 1.32 16 53 H 0.07 1.30 7.86 -2.39 -0.02 1.28 16 Total: -1.00 -69.21 382.80 3.15 -66.06 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.89 Total: 15.76 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 5.68 Total: 4.89 kcal Atomic # 7 Polarization: -96.49 SS G_CDS: -4.28 Total: -100.76 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -1.18 Total: -32.17 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -69.21 3.15 -66.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957581447.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.851 kcal (2) G-P(sol) polarization free energy of solvation -69.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds