Wall clock time and date at job start Tue Mar 31 2020 21:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.54149 * 2 1 4 4 C 1.54814 * 110.48795 * 237.38091 * 2 1 3 5 5 C 1.55002 * 102.09123 * 220.44118 * 4 2 1 6 6 O 1.44382 * 103.48737 * 37.02761 * 5 4 2 7 7 C 1.43738 * 106.97644 * 319.93617 * 6 5 4 8 8 H 1.09004 * 109.87848 * 267.09133 * 7 6 5 9 9 C 1.50697 * 109.88298 * 145.93972 * 7 6 5 10 10 O 1.21287 * 119.99869 * 339.01575 * 9 7 6 11 11 N 1.34774 * 120.00570 * 159.01197 * 9 7 6 12 12 C 1.46935 * 120.63940 * 4.69119 * 11 9 7 13 13 C 1.53615 * 108.53922 * 126.32363 * 12 11 9 14 14 C 1.53044 * 109.26286 * 54.86519 * 13 12 11 15 15 C 1.53028 * 109.44072 * 58.57128 * 14 13 12 16 16 C 1.53188 * 109.33685 * 181.23156 * 15 14 13 17 17 N 1.46933 * 108.78061 * 305.37698 * 16 15 14 18 18 C 1.36946 * 120.64176 * 233.61696 * 17 16 15 19 19 H 1.07994 * 119.99737 * 31.41323 * 18 17 16 20 20 C 1.38811 * 119.99862 * 211.41745 * 18 17 16 21 21 N 1.31622 * 119.99970 * 10.27795 * 20 18 17 22 22 Si 1.86798 * 119.99991 * 190.27996 * 20 18 17 23 23 H 1.48500 * 109.46820 * 59.99614 * 22 20 18 24 24 H 1.48504 * 109.47077 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.46923 * 299.99805 * 22 20 18 26 26 C 1.46925 * 118.71795 * 53.63368 * 17 16 15 27 27 C 1.53048 * 109.39271 * 178.60033 * 14 13 12 28 28 C 1.53032 * 109.54929 * 298.56144 * 14 13 12 29 29 C 1.46935 * 120.64898 * 184.96458 * 11 9 7 30 30 H 1.09002 * 109.46964 * 176.84294 * 1 2 3 31 31 H 1.08997 * 109.46810 * 296.84680 * 1 2 3 32 32 H 1.08996 * 109.46856 * 56.84684 * 1 2 3 33 33 H 1.08999 * 110.90942 * 338.64475 * 4 2 1 34 34 H 1.09004 * 110.90683 * 102.24482 * 4 2 1 35 35 H 1.08997 * 110.61410 * 155.52373 * 5 4 2 36 36 H 1.08996 * 110.61835 * 278.52310 * 5 4 2 37 37 H 1.09005 * 109.58492 * 246.15226 * 12 11 9 38 38 H 1.08993 * 109.58849 * 6.58148 * 12 11 9 39 39 H 1.09003 * 109.63202 * 294.86630 * 13 12 11 40 40 H 1.09005 * 109.42818 * 174.73823 * 13 12 11 41 41 H 1.08998 * 109.49817 * 301.19597 * 15 14 13 42 42 H 1.09003 * 109.49364 * 61.27693 * 15 14 13 43 43 H 1.09002 * 109.58612 * 185.58715 * 16 15 14 44 44 H 1.08994 * 109.70316 * 65.23525 * 16 15 14 45 45 H 0.97000 * 120.00122 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58700 * 186.56859 * 26 17 16 47 47 H 1.09002 * 109.69823 * 66.21503 * 26 17 16 48 48 H 1.09003 * 109.49385 * 298.68749 * 27 14 13 49 49 H 1.09003 * 109.49396 * 58.74369 * 27 14 13 50 50 H 1.09002 * 109.48815 * 301.34328 * 28 14 13 51 51 H 1.08990 * 109.49545 * 181.25730 * 28 14 13 52 52 H 1.09006 * 109.57948 * 353.41224 * 29 11 9 53 53 H 1.09001 * 109.58005 * 113.82920 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9125 1.0207 0.0000 4 6 2.0719 -0.7817 -1.2215 5 6 3.2661 -1.5561 -0.6076 6 8 2.7955 -1.9110 0.7104 7 6 2.0694 -0.7781 1.2159 8 1 2.7351 -0.1409 1.7981 9 6 0.9227 -1.2460 2.0745 10 8 0.4950 -2.3744 1.9528 11 7 0.3725 -0.4106 2.9778 12 6 0.8098 0.9893 3.0668 13 6 -0.4259 1.8951 2.9553 14 6 -1.4480 1.4878 4.0191 15 6 -0.8132 1.6048 5.4066 16 6 -1.8282 1.1674 6.4673 17 7 -3.0579 1.9537 6.2981 18 6 -3.5939 2.6462 7.3510 19 1 -2.9478 3.0519 8.1154 20 6 -4.9676 2.8265 7.4357 21 7 -5.7690 2.1682 6.6253 22 14 -5.6789 4.0036 8.6998 23 1 -5.1520 5.3702 8.4552 24 1 -7.1595 4.0166 8.5861 25 1 -5.2906 3.5600 10.0627 26 6 -3.7015 1.9824 4.9777 27 6 -2.6658 2.4109 3.9336 28 6 -1.8874 0.0416 3.7799 29 6 -0.6721 -0.8836 3.8965 30 1 -0.3633 -1.0261 -0.0566 31 1 -0.3633 0.4641 0.9169 32 1 -0.3633 0.5620 -0.8604 33 1 1.3197 -1.4694 -1.6081 34 1 2.4103 -0.0993 -2.0011 35 1 3.4840 -2.4506 -1.1911 36 1 4.1456 -0.9158 -0.5418 37 1 1.3044 1.1575 4.0235 38 1 1.5002 1.2090 2.2525 39 1 -0.8694 1.7892 1.9653 40 1 -0.1305 2.9324 3.1130 41 1 0.0669 0.9641 5.4592 42 1 -0.5217 2.6395 5.5871 43 1 -1.4164 1.3423 7.4613 44 1 -2.0527 0.1077 6.3462 45 1 -6.7290 2.2944 6.6843 46 1 -4.5261 2.6951 4.9885 47 1 -4.0794 0.9900 4.7315 48 1 -2.3577 3.4384 4.1273 49 1 -3.1036 2.3442 2.9375 50 1 -2.3180 -0.0474 2.7825 51 1 -2.6318 -0.2403 4.5245 52 1 -0.9600 -1.9006 3.6298 53 1 -0.2951 -0.8646 4.9191 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957608641.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:32 Heat of formation + Delta-G solvation = -75.842348 kcal Electronic energy + Delta-G solvation = -31923.119516 eV Core-core repulsion = 27987.324538 eV Total energy + Delta-G solvation = -3935.794978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.15433 -40.73076 -39.18661 -37.36548 -35.27123 -34.50609 -33.01859 -32.38302 -31.60684 -30.76341 -29.51998 -27.80359 -26.66100 -25.11001 -24.47722 -23.64511 -23.36377 -22.43660 -21.65400 -20.26672 -19.19879 -18.61083 -18.13111 -17.45714 -17.35793 -16.84395 -16.24616 -16.06781 -15.84515 -15.62043 -15.41479 -15.27782 -15.08546 -14.83406 -14.67058 -14.53633 -14.32976 -14.09350 -13.61371 -13.43738 -13.32252 -13.11874 -12.98436 -12.86069 -12.69171 -12.54041 -12.32524 -12.30957 -12.20407 -12.16104 -12.11197 -11.92719 -11.77218 -11.71874 -11.58384 -11.15447 -11.05139 -11.03751 -10.85078 -10.48139 -10.38210 -9.57094 -8.54628 -7.83269 -5.34049 1.46706 1.48171 1.51416 1.54957 1.83892 2.51889 3.00531 3.30980 3.34203 3.48964 3.72021 3.75615 3.82740 3.84665 3.87356 4.02309 4.15574 4.21669 4.27438 4.31264 4.34310 4.45793 4.49426 4.57393 4.62373 4.65966 4.69967 4.72870 4.77716 4.83543 4.83627 4.85542 4.89870 4.94526 5.02311 5.04555 5.06559 5.09957 5.18527 5.21073 5.28365 5.34383 5.39411 5.48624 5.52785 5.60702 5.64592 5.70329 5.83805 5.88539 6.41472 6.44747 7.14760 7.20053 7.91829 8.43673 9.21195 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.032250 B = 0.002695 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.995395 B =10386.649245 C =10522.191490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.107 4.107 3 H 0.131 0.869 4 C -0.147 4.147 5 C 0.038 3.962 6 O -0.389 6.389 7 C 0.061 3.939 8 H 0.119 0.881 9 C 0.517 3.483 10 O -0.582 6.582 11 N -0.601 5.601 12 C 0.101 3.899 13 C -0.118 4.118 14 C -0.040 4.040 15 C -0.111 4.111 16 C 0.139 3.861 17 N -0.608 5.608 18 C -0.260 4.260 19 H 0.064 0.936 20 C -0.051 4.051 21 N -0.937 5.937 22 Si 0.967 3.033 23 H -0.276 1.276 24 H -0.296 1.296 25 H -0.277 1.277 26 C 0.180 3.820 27 C -0.117 4.117 28 C -0.113 4.113 29 C 0.120 3.880 30 H 0.029 0.971 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.115 0.885 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.045 0.955 44 H 0.011 0.989 45 H 0.248 0.752 46 H 0.046 0.954 47 H -0.007 1.007 48 H 0.054 0.946 49 H 0.058 0.942 50 H 0.053 0.947 51 H 0.056 0.944 52 H 0.066 0.934 53 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.376 0.674 -16.339 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.126 4.126 3 H 0.149 0.851 4 C -0.184 4.184 5 C -0.037 4.037 6 O -0.308 6.308 7 C 0.000 4.000 8 H 0.136 0.864 9 C 0.306 3.694 10 O -0.461 6.461 11 N -0.335 5.335 12 C -0.020 4.020 13 C -0.156 4.156 14 C -0.040 4.040 15 C -0.149 4.149 16 C 0.014 3.986 17 N -0.332 5.332 18 C -0.390 4.390 19 H 0.082 0.918 20 C -0.247 4.247 21 N -0.584 5.584 22 Si 0.795 3.205 23 H -0.202 1.202 24 H -0.222 1.222 25 H -0.203 1.203 26 C 0.054 3.946 27 C -0.156 4.156 28 C -0.151 4.151 29 C -0.003 4.003 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.133 0.867 35 H 0.117 0.883 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.029 0.971 45 H 0.057 0.943 46 H 0.064 0.936 47 H 0.011 0.989 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.072 0.928 51 H 0.074 0.926 52 H 0.084 0.916 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.029 -0.122 -16.280 25.811 hybrid contribution -1.520 0.163 0.949 1.799 sum 18.509 0.042 -15.331 24.033 Atomic orbital electron populations 1.22171 0.94804 1.01239 1.03896 1.22580 0.96449 1.01295 0.92278 0.85110 1.23265 0.97686 0.99540 0.97925 1.23880 0.97043 1.00939 0.81855 1.88950 1.71012 1.37520 1.33321 1.23001 0.92030 0.88640 0.96321 0.86388 1.20945 0.84050 0.84661 0.79755 1.90669 1.64164 1.22083 1.69226 1.48151 1.38630 1.11957 1.34725 1.22218 0.97098 0.78179 1.04541 1.22108 0.94753 1.00248 0.98488 1.20314 0.94939 0.93429 0.95363 1.21991 0.97532 1.01428 0.93986 1.21084 0.87252 0.92986 0.97262 1.44232 1.27162 1.55265 1.06541 1.19471 0.89861 1.26678 1.03029 0.91846 1.25900 0.96941 1.01190 1.00620 1.70145 1.02516 1.44075 1.41633 0.85353 0.76582 0.79250 0.79311 1.20189 1.22248 1.20277 1.20545 0.93610 0.96850 0.83551 1.22039 0.96549 0.98781 0.98245 1.21849 0.96856 0.95349 1.01029 1.21477 0.87761 0.97844 0.93179 0.95212 0.91112 0.90170 0.91909 0.86687 0.88312 0.89179 0.89348 0.87019 0.90895 0.88712 0.90244 0.92031 0.93632 0.97139 0.94297 0.93566 0.98870 0.92711 0.92329 0.92790 0.92562 0.91596 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 7.94 71.98 0.57 -2.34 16 2 C -0.11 -1.40 2.89 -9.80 -0.03 -1.42 16 3 H 0.13 0.77 8.02 -2.39 -0.02 0.75 16 4 C -0.15 -1.71 6.71 31.90 0.21 -1.50 16 5 C 0.04 0.52 7.72 72.67 0.56 1.08 16 6 O -0.39 -9.16 10.82 -131.20 -1.42 -10.58 16 7 C 0.06 1.15 2.91 30.22 0.09 1.24 16 8 H 0.12 1.50 6.94 -2.39 -0.02 1.48 16 9 C 0.52 13.89 4.84 87.66 0.42 14.31 16 10 O -0.58 -21.73 15.81 14.73 0.23 -21.50 16 11 N -0.60 -13.91 2.34 -818.04 -1.92 -15.83 16 12 C 0.10 1.58 4.91 86.50 0.42 2.00 16 13 C -0.12 -2.21 4.70 30.82 0.14 -2.07 16 14 C -0.04 -1.12 0.51 -52.13 -0.03 -1.14 16 15 C -0.11 -3.24 4.14 30.67 0.13 -3.12 16 16 C 0.14 5.56 6.04 86.36 0.52 6.08 16 17 N -0.61 -29.98 2.99 -699.10 -2.09 -32.07 16 18 C -0.26 -14.23 9.58 84.03 0.81 -13.43 16 19 H 0.06 3.38 7.85 -2.91 -0.02 3.36 16 20 C -0.05 -2.88 5.06 84.86 0.43 -2.45 16 21 N -0.94 -55.93 11.03 21.65 0.24 -55.69 16 22 Si 0.97 44.99 29.57 68.60 2.03 47.01 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 24 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 C 0.18 8.54 4.78 86.36 0.41 8.95 16 27 C -0.12 -4.09 4.90 30.67 0.15 -3.94 16 28 C -0.11 -3.45 4.15 30.67 0.13 -3.32 16 29 C 0.12 3.37 5.97 86.36 0.52 3.88 16 30 H 0.03 0.73 7.41 -2.39 -0.02 0.71 16 31 H 0.07 1.33 3.52 -2.39 -0.01 1.32 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 0.98 7.84 -2.39 -0.02 0.96 16 34 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.09 1.24 6.66 -2.38 -0.02 1.22 16 38 H 0.11 1.04 5.18 -2.39 -0.01 1.03 16 39 H 0.07 1.34 6.17 -2.39 -0.01 1.32 16 40 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.08 1.91 4.97 -2.39 -0.01 1.90 16 42 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.05 1.82 7.93 -2.39 -0.02 1.80 16 44 H 0.01 0.44 6.74 -2.39 -0.02 0.43 16 45 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 46 H 0.05 2.54 6.09 -2.39 -0.01 2.53 16 47 H -0.01 -0.35 6.67 -2.39 -0.02 -0.36 16 48 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 51 H 0.06 2.12 4.99 -2.39 -0.01 2.11 16 52 H 0.07 2.15 7.00 -2.38 -0.02 2.13 16 53 H 0.08 2.07 6.72 -2.39 -0.02 2.05 16 Total: -1.00 -75.27 373.93 3.44 -71.82 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.91 Total: 14.02 kcal Atomic # 6 Polarization: -2.65 SS G_CDS: 5.46 Total: 2.81 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -3.77 Total: -103.59 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.19 Total: -32.08 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.27 3.44 -71.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957608641.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.020 kcal (2) G-P(sol) polarization free energy of solvation -75.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds