Wall clock time and date at job start Tue Mar 31 2020 20:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09007 * 110.42059 * 2 1 4 4 C 1.54481 * 110.36958 * 237.69193 * 2 1 3 5 5 C 1.54515 * 104.06026 * 217.18861 * 4 2 1 6 6 C 1.54475 * 104.06077 * 359.97438 * 5 4 2 7 7 H 1.09005 * 110.47257 * 265.09726 * 6 5 4 8 8 C 1.50706 * 110.36968 * 142.81105 * 6 5 4 9 9 O 1.21278 * 120.00119 * 248.16491 * 8 6 5 10 10 N 1.34777 * 120.00001 * 68.16587 * 8 6 5 11 11 C 1.46918 * 120.64083 * 180.02562 * 10 8 6 12 12 C 1.53184 * 108.78740 * 126.39291 * 11 10 8 13 13 C 1.53034 * 109.33292 * 54.61557 * 12 11 10 14 14 C 1.53028 * 109.45583 * 58.69316 * 13 12 11 15 15 C 1.53186 * 109.34055 * 58.70345 * 14 13 12 16 16 N 1.46929 * 108.78335 * 54.61479 * 15 14 13 17 17 C 1.36940 * 120.64012 * 126.35379 * 16 15 14 18 18 H 1.08007 * 119.99851 * 331.83598 * 17 16 15 19 19 C 1.38803 * 120.00093 * 151.83856 * 17 16 15 20 20 N 1.31623 * 120.00182 * 343.07648 * 19 17 16 21 21 Si 1.86803 * 119.99961 * 163.07707 * 19 17 16 22 22 H 1.48495 * 109.47248 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47123 * 120.00223 * 21 19 17 24 24 H 1.48501 * 109.47038 * 239.99810 * 21 19 17 25 25 C 1.46924 * 118.71934 * 306.37844 * 16 15 14 26 26 C 1.53048 * 109.44265 * 178.75864 * 13 12 11 27 27 C 1.53046 * 109.54904 * 298.69806 * 13 12 11 28 28 C 1.46926 * 120.63925 * 0.02562 * 10 8 6 29 29 O 1.44417 * 110.37595 * 122.30922 * 2 1 3 30 30 H 1.09005 * 109.46897 * 299.14259 * 1 2 3 31 31 H 1.08999 * 109.47408 * 59.14214 * 1 2 3 32 32 H 1.08998 * 109.46590 * 179.14393 * 1 2 3 33 33 H 1.08997 * 110.51442 * 335.83263 * 4 2 1 34 34 H 1.08998 * 110.51286 * 98.40993 * 4 2 1 35 35 H 1.09000 * 110.50857 * 241.35624 * 5 4 2 36 36 H 1.08994 * 110.50932 * 118.64306 * 5 4 2 37 37 H 1.09007 * 109.58748 * 6.60393 * 11 10 8 38 38 H 1.09000 * 109.58495 * 246.18908 * 11 10 8 39 39 H 1.08994 * 109.49821 * 294.65969 * 12 11 10 40 40 H 1.09005 * 109.49803 * 174.56929 * 12 11 10 41 41 H 1.09006 * 109.49482 * 298.74554 * 14 13 12 42 42 H 1.09007 * 109.49816 * 178.66241 * 14 13 12 43 43 H 1.09005 * 109.58830 * 174.40375 * 15 14 13 44 44 H 1.08998 * 109.58501 * 294.83000 * 15 14 13 45 45 H 0.96995 * 120.00058 * 180.02562 * 20 19 17 46 46 H 1.09005 * 109.58680 * 293.84563 * 25 16 15 47 47 H 1.09005 * 109.58461 * 173.42272 * 25 16 15 48 48 H 1.08999 * 109.49202 * 61.25346 * 26 13 12 49 49 H 1.08998 * 109.49351 * 181.34213 * 26 13 12 50 50 H 1.08990 * 109.49660 * 181.27432 * 27 13 12 51 51 H 1.08999 * 109.49196 * 301.36643 * 27 13 12 52 52 H 1.09005 * 109.58874 * 353.40653 * 28 10 8 53 53 H 1.09005 * 109.58549 * 113.69084 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0216 0.0000 4 6 2.0678 -0.7740 -1.2240 5 6 3.3178 -1.5057 -0.6859 6 6 3.3877 -1.0866 0.7992 7 1 4.0534 -0.2324 0.9234 8 6 3.8535 -2.2410 1.6487 9 8 3.0900 -2.7638 2.4326 10 7 5.1185 -2.6925 1.5372 11 6 5.5872 -3.8173 2.3580 12 6 6.1808 -4.8870 1.4361 13 6 7.2637 -4.2552 0.5585 14 6 8.3504 -3.6473 1.4481 15 6 8.9482 -4.7415 2.3381 16 7 9.4135 -5.8436 1.4850 17 6 10.6996 -6.3043 1.5795 18 1 11.4888 -5.6404 1.9002 19 6 10.9889 -7.6245 1.2632 20 7 10.0201 -8.5131 1.1981 21 14 12.7531 -8.1399 0.9297 22 1 13.6470 -6.9619 1.0649 23 1 13.1570 -9.1832 1.9064 24 1 12.8577 -8.6846 -0.4478 25 6 8.4723 -6.4414 0.5281 26 6 7.8801 -5.3284 -0.3419 27 6 6.6436 -3.1579 -0.3098 28 6 6.0554 -2.0692 0.5925 29 8 2.0329 -0.7236 1.1442 30 1 -0.3633 0.5005 0.8976 31 1 -0.3634 0.5271 -0.8822 32 1 -0.3632 -1.0276 -0.0154 33 1 1.3276 -1.4919 -1.5773 34 1 2.3407 -0.0841 -2.0225 35 1 4.2109 -1.1772 -1.2175 36 1 3.1955 -2.5852 -0.7732 37 1 4.7493 -4.2382 2.9138 38 1 6.3512 -3.4690 3.0530 39 1 5.3947 -5.2990 0.8035 40 1 6.6191 -5.6833 2.0377 41 1 7.9148 -2.8677 2.0732 42 1 9.1339 -3.2180 0.8236 43 1 9.7886 -4.3357 2.9014 44 1 8.1873 -5.1087 3.0267 45 1 10.2224 -9.4358 0.9774 46 1 7.6725 -6.9467 1.0695 47 1 8.9985 -7.1576 -0.1030 48 1 7.1098 -5.7450 -0.9909 49 1 8.6678 -4.8842 -0.9503 50 1 7.4110 -2.7240 -0.9506 51 1 5.8530 -3.5854 -0.9264 52 1 5.5266 -1.3362 -0.0167 53 1 6.8564 -1.5765 1.1437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957610776.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:25 Heat of formation + Delta-G solvation = -80.439837 kcal Electronic energy + Delta-G solvation = -31307.757299 eV Core-core repulsion = 27371.762959 eV Total energy + Delta-G solvation = -3935.994340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.95503 -40.68456 -39.35893 -37.39462 -35.19570 -33.30758 -33.17764 -32.96421 -31.74547 -31.54873 -29.60482 -27.72181 -26.64058 -24.86900 -24.31281 -23.67767 -23.17098 -22.17844 -22.00125 -20.55351 -19.18726 -18.54600 -18.09519 -17.41286 -17.36669 -16.84636 -16.44689 -16.05056 -15.76628 -15.71574 -15.28986 -15.17617 -15.04095 -14.84994 -14.73699 -14.54539 -14.39354 -13.95492 -13.52190 -13.30101 -13.23738 -13.12578 -13.03209 -12.89704 -12.82806 -12.63257 -12.57002 -12.47187 -12.19960 -12.11926 -12.06329 -11.82313 -11.75338 -11.69189 -11.54491 -11.16038 -11.06444 -10.98277 -10.87988 -10.56942 -10.48001 -9.62541 -8.60658 -7.84834 -5.29747 1.45208 1.47276 1.49841 1.57521 1.75532 2.52075 2.93317 3.28885 3.33992 3.57504 3.73872 3.78496 3.83853 3.84517 3.91469 3.97676 4.14633 4.16898 4.21066 4.29746 4.33601 4.45977 4.49715 4.54866 4.57637 4.65213 4.70410 4.76009 4.78596 4.81995 4.83514 4.87728 4.95759 5.00138 5.01214 5.03573 5.08703 5.11605 5.18560 5.20385 5.27530 5.31872 5.37336 5.45730 5.49928 5.59257 5.63168 5.69632 5.85403 5.86605 6.38165 6.41972 7.10162 7.18203 7.91382 8.42271 9.20709 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.033271 B = 0.002477 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.371661 B =11302.756024 C =11485.547035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.057 3.943 3 H 0.092 0.908 4 C -0.144 4.144 5 C -0.142 4.142 6 C 0.061 3.939 7 H 0.123 0.877 8 C 0.511 3.489 9 O -0.583 6.583 10 N -0.597 5.597 11 C 0.120 3.880 12 C -0.114 4.114 13 C -0.042 4.042 14 C -0.110 4.110 15 C 0.138 3.862 16 N -0.608 5.608 17 C -0.256 4.256 18 H 0.065 0.935 19 C -0.054 4.054 20 N -0.936 5.936 21 Si 0.964 3.036 22 H -0.265 1.265 23 H -0.295 1.295 24 H -0.291 1.291 25 C 0.178 3.822 26 C -0.116 4.116 27 C -0.116 4.116 28 C 0.098 3.902 29 O -0.384 6.384 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.011 0.989 45 H 0.248 0.752 46 H -0.006 1.006 47 H 0.045 0.955 48 H 0.058 0.942 49 H 0.056 0.944 50 H 0.096 0.904 51 H 0.069 0.931 52 H 0.116 0.884 53 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.640 21.815 -8.824 27.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.000 4.000 3 H 0.110 0.890 4 C -0.182 4.182 5 C -0.179 4.179 6 C 0.000 4.000 7 H 0.140 0.860 8 C 0.300 3.700 9 O -0.462 6.462 10 N -0.331 5.331 11 C -0.003 4.003 12 C -0.152 4.152 13 C -0.042 4.042 14 C -0.149 4.149 15 C 0.013 3.987 16 N -0.331 5.331 17 C -0.386 4.386 18 H 0.083 0.917 19 C -0.249 4.249 20 N -0.583 5.583 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.223 1.223 24 H -0.218 1.218 25 C 0.052 3.948 26 C -0.155 4.155 27 C -0.154 4.154 28 C -0.023 4.023 29 O -0.303 6.303 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.130 0.870 35 H 0.141 0.859 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.029 0.971 45 H 0.057 0.943 46 H 0.012 0.988 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.074 0.926 50 H 0.114 0.886 51 H 0.087 0.913 52 H 0.134 0.866 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.134 21.353 -8.233 26.898 hybrid contribution 0.988 -1.510 0.277 1.826 sum -13.147 19.843 -7.956 25.098 Atomic orbital electron populations 1.21837 0.92731 1.02438 1.03386 1.23371 0.96067 0.96181 0.84361 0.89010 1.23040 0.96702 1.00030 0.98394 1.23040 1.01365 1.01525 0.92008 1.22985 0.86824 0.95646 0.94549 0.85951 1.20936 0.81383 0.84788 0.82896 1.90682 1.55047 1.60433 1.40074 1.48104 1.10751 1.33516 1.40708 1.21491 0.98751 0.86801 0.93248 1.21866 0.97559 0.97454 0.98327 1.20332 0.93817 0.95050 0.94984 1.21988 0.97352 0.97274 0.98279 1.21095 0.96327 0.88897 0.92361 1.44290 1.09379 1.38734 1.40744 1.19538 0.85572 0.92752 1.40756 0.91694 1.25783 1.00752 0.95689 1.02706 1.70202 1.32597 1.01769 1.53738 0.85254 0.80715 0.77855 0.76919 1.18958 1.22282 1.21755 1.20563 0.90463 0.93181 0.90551 1.22025 0.98970 0.97003 0.97545 1.21945 1.00735 0.95323 0.97400 1.22231 0.93038 0.95734 0.91302 1.89271 1.26115 1.75053 1.39890 0.92474 0.88406 0.93233 0.90825 0.87004 0.85950 0.91901 0.91575 0.90363 0.92799 0.92462 0.90223 0.91922 0.93523 0.97107 0.94335 0.98789 0.93672 0.92301 0.92556 0.88569 0.91270 0.86646 0.89309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.52 71.98 0.69 -1.21 16 2 C 0.06 0.80 3.92 31.10 0.12 0.92 16 3 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 4 C -0.14 -1.48 6.63 31.61 0.21 -1.27 16 5 C -0.14 -1.79 5.68 31.61 0.18 -1.61 16 6 C 0.06 1.13 2.75 30.35 0.08 1.22 16 7 H 0.12 1.51 7.68 -2.38 -0.02 1.49 16 8 C 0.51 13.87 6.99 87.66 0.61 14.48 16 9 O -0.58 -22.19 15.97 15.34 0.24 -21.94 16 10 N -0.60 -13.81 2.97 -818.99 -2.43 -16.25 16 11 C 0.12 3.35 5.96 86.36 0.52 3.87 16 12 C -0.11 -3.48 4.14 30.67 0.13 -3.36 16 13 C -0.04 -1.15 0.51 -52.13 -0.03 -1.18 16 14 C -0.11 -3.19 4.14 30.67 0.13 -3.06 16 15 C 0.14 5.48 6.05 86.36 0.52 6.00 16 16 N -0.61 -29.81 2.99 -699.10 -2.09 -31.91 16 17 C -0.26 -13.96 9.58 84.03 0.81 -13.15 16 18 H 0.07 3.46 7.89 -2.91 -0.02 3.44 16 19 C -0.05 -3.04 4.92 84.86 0.42 -2.63 16 20 N -0.94 -55.95 11.20 21.65 0.24 -55.71 16 21 Si 0.96 44.99 29.59 68.60 2.03 47.02 16 22 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 25 C 0.18 8.41 4.84 86.36 0.42 8.83 16 26 C -0.12 -4.04 4.90 30.67 0.15 -3.89 16 27 C -0.12 -2.13 4.90 30.66 0.15 -1.98 16 28 C 0.10 1.48 5.55 86.35 0.48 1.96 16 29 O -0.38 -9.22 10.60 -130.62 -1.39 -10.61 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 0.78 8.12 -2.39 -0.02 0.76 16 33 H 0.07 0.85 7.86 -2.39 -0.02 0.83 16 34 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.12 0.70 6.72 -2.39 -0.02 0.69 16 36 H 0.06 1.06 7.87 -2.39 -0.02 1.05 16 37 H 0.07 2.15 7.01 -2.38 -0.02 2.13 16 38 H 0.08 2.09 6.72 -2.39 -0.02 2.08 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 2.14 4.99 -2.38 -0.01 2.13 16 41 H 0.08 1.89 4.99 -2.38 -0.01 1.88 16 42 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 43 H 0.05 1.84 7.93 -2.38 -0.02 1.82 16 44 H 0.01 0.45 6.72 -2.39 -0.02 0.44 16 45 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 46 H -0.01 -0.30 6.67 -2.38 -0.02 -0.32 16 47 H 0.04 2.47 6.06 -2.38 -0.01 2.46 16 48 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 52 H 0.12 0.98 4.16 -2.38 -0.01 0.97 16 53 H 0.09 1.19 6.68 -2.38 -0.02 1.18 16 Total: -1.00 -76.18 383.42 3.08 -73.10 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.89 Total: 12.35 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 5.58 Total: 3.95 kcal Atomic # 7 Polarization: -99.58 SS G_CDS: -4.28 Total: -103.86 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -1.14 Total: -32.55 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -76.18 3.08 -73.10 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957610776.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.341 kcal (2) G-P(sol) polarization free energy of solvation -76.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds