Wall clock time and date at job start Tue Mar 31 2020 21:30:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08998 * 109.87306 * 2 1 4 4 O 1.43745 * 109.87607 * 121.16299 * 2 1 3 5 5 C 1.44383 * 106.97242 * 145.93575 * 4 2 1 6 6 C 1.54999 * 103.49132 * 319.93778 * 5 4 2 7 7 C 1.54096 * 109.87590 * 238.99416 * 2 1 3 8 8 H 1.08999 * 110.49113 * 357.34973 * 7 2 1 9 9 C 1.50701 * 110.49106 * 119.87326 * 7 2 1 10 10 O 1.21280 * 119.99595 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00382 * 180.02562 * 9 7 2 12 12 C 1.46923 * 120.64175 * 179.97438 * 11 9 7 13 13 C 1.53191 * 108.77270 * 126.33286 * 12 11 9 14 14 C 1.53043 * 109.33429 * 54.63582 * 13 12 11 15 15 C 1.53032 * 109.43895 * 58.70225 * 14 13 12 16 16 C 1.53192 * 109.33441 * 181.23097 * 15 14 13 17 17 N 1.46932 * 108.78215 * 305.37755 * 16 15 14 18 18 C 1.36935 * 120.64531 * 233.61594 * 17 16 15 19 19 H 1.08005 * 120.00028 * 152.33659 * 18 17 16 20 20 C 1.38809 * 120.00184 * 332.06136 * 18 17 16 21 21 N 1.31621 * 119.99677 * 343.02974 * 20 18 17 22 22 Si 1.86795 * 120.00150 * 163.02465 * 20 18 17 23 23 H 1.48498 * 109.47378 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46880 * 120.00385 * 22 20 18 25 25 H 1.48500 * 109.47541 * 239.99809 * 22 20 18 26 26 C 1.46932 * 118.71192 * 53.88784 * 17 16 15 27 27 C 1.53041 * 109.39302 * 178.72837 * 14 13 12 28 28 C 1.53025 * 109.54656 * 298.69195 * 14 13 12 29 29 C 1.46933 * 120.63934 * 359.97436 * 11 9 7 30 30 H 1.08992 * 109.47111 * 181.00474 * 1 2 3 31 31 H 1.08994 * 109.46993 * 301.00629 * 1 2 3 32 32 H 1.08996 * 109.46613 * 61.00890 * 1 2 3 33 33 H 1.09004 * 110.61704 * 78.44191 * 5 4 2 34 34 H 1.09000 * 110.61570 * 201.27889 * 5 4 2 35 35 H 1.09000 * 110.90380 * 278.82351 * 6 5 4 36 36 H 1.09002 * 110.90472 * 155.22355 * 6 5 4 37 37 H 1.09000 * 109.58499 * 6.55038 * 12 11 9 38 38 H 1.08997 * 109.70339 * 246.18911 * 12 11 9 39 39 H 1.08999 * 109.49320 * 294.67417 * 13 12 11 40 40 H 1.09001 * 109.51346 * 174.60610 * 13 12 11 41 41 H 1.09007 * 109.49668 * 61.27665 * 15 14 13 42 42 H 1.08993 * 109.49557 * 301.18609 * 15 14 13 43 43 H 1.08996 * 109.59009 * 185.58737 * 16 15 14 44 44 H 1.09001 * 109.58537 * 65.16687 * 16 15 14 45 45 H 0.97004 * 119.99779 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58424 * 65.88590 * 26 17 16 47 47 H 1.08997 * 109.58740 * 186.30946 * 26 17 16 48 48 H 1.09005 * 109.49444 * 298.68489 * 27 14 13 49 49 H 1.09001 * 109.49224 * 58.76341 * 27 14 13 50 50 H 1.09004 * 109.49069 * 181.26153 * 28 14 13 51 51 H 1.09004 * 109.49364 * 301.33768 * 28 14 13 52 52 H 1.08997 * 109.58990 * 353.44570 * 29 11 9 53 53 H 1.08996 * 109.58491 * 113.73132 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 8 2.0188 -0.6995 1.1567 5 6 3.2380 -1.3653 0.7628 6 6 2.9195 -1.8906 -0.6602 7 6 2.0540 -0.7465 -1.2421 8 1 1.2246 -1.1504 -1.8226 9 6 2.8946 0.1703 -2.0930 10 8 3.0701 1.3212 -1.7534 11 7 3.4504 -0.2886 -3.2319 12 6 4.2720 0.5931 -4.0723 13 6 5.6280 -0.0778 -4.3125 14 6 5.4058 -1.4747 -4.8969 15 6 4.6219 -1.3602 -6.2062 16 6 4.3741 -2.7616 -6.7732 17 7 5.6632 -3.4552 -6.9004 18 6 6.0433 -4.0084 -8.0940 19 1 7.0917 -4.1089 -8.3330 20 6 5.0812 -4.4452 -8.9942 21 7 3.8441 -4.6430 -8.5908 22 14 5.5423 -4.7521 -10.7782 23 1 6.9846 -4.4581 -10.9744 24 1 5.2759 -6.1723 -11.1210 25 1 4.7329 -3.8706 -11.6574 26 6 6.5338 -3.5489 -5.7205 27 6 6.7602 -2.1340 -5.1670 28 6 4.6143 -2.3260 -3.9017 29 6 3.2465 -1.6802 -3.6569 30 1 -0.3633 -1.0274 0.0180 31 1 -0.3633 0.5294 0.8808 32 1 -0.3632 0.4981 -0.8989 33 1 4.0686 -0.6599 0.7347 34 1 3.4599 -2.1911 1.4388 35 1 2.3540 -2.8213 -0.6137 36 1 3.8332 -2.0209 -1.2402 37 1 4.4207 1.5466 -3.5654 38 1 3.7730 0.7606 -5.0268 39 1 6.1656 -0.1600 -3.3678 40 1 6.2115 0.5206 -5.0122 41 1 5.1958 -0.7738 -6.9238 42 1 3.6668 -0.8705 -6.0167 43 1 3.9041 -2.6814 -7.7533 44 1 3.7243 -3.3191 -6.0986 45 1 3.1717 -4.9478 -9.2200 46 1 6.0557 -4.1688 -4.9621 47 1 7.4895 -3.9886 -6.0056 48 1 7.3150 -1.5407 -5.8939 49 1 7.3270 -2.1945 -4.2378 50 1 4.4759 -3.3275 -4.3092 51 1 5.1611 -2.3882 -2.9607 52 1 2.7185 -2.2272 -2.8759 53 1 2.6610 -1.6994 -4.5761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957626566.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:03 Heat of formation + Delta-G solvation = -80.993195 kcal Electronic energy + Delta-G solvation = -31757.486932 eV Core-core repulsion = 27821.468596 eV Total energy + Delta-G solvation = -3936.018336 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.11318 -40.73810 -39.28003 -37.36131 -35.25153 -33.90253 -32.90931 -32.43632 -31.84449 -31.46672 -29.58049 -27.62517 -26.50948 -24.88238 -24.40559 -23.69685 -23.22708 -22.82307 -21.67144 -20.44097 -19.20033 -18.43884 -18.04813 -17.51746 -17.03798 -16.84268 -16.40253 -16.12090 -15.96753 -15.72866 -15.49791 -15.24897 -15.04020 -14.88611 -14.68028 -14.39336 -14.19991 -14.09230 -13.54834 -13.45302 -13.26262 -13.17609 -12.94332 -12.86488 -12.82246 -12.65892 -12.55104 -12.31685 -12.23097 -12.14267 -12.00322 -11.95969 -11.84526 -11.73862 -11.63603 -11.19632 -11.04786 -10.91400 -10.82069 -10.57629 -10.46199 -9.62171 -8.58603 -7.83973 -5.27188 1.45135 1.48472 1.49955 1.57348 1.91950 2.52796 2.83420 3.29898 3.40915 3.44184 3.66544 3.75240 3.81375 3.83705 3.89742 4.00547 4.14534 4.16950 4.26070 4.30901 4.36328 4.42165 4.48236 4.61282 4.61915 4.66177 4.67919 4.70625 4.73924 4.78475 4.80465 4.85289 4.89655 4.92148 4.99269 5.05683 5.08506 5.10434 5.11287 5.18268 5.25017 5.37269 5.39109 5.44591 5.47609 5.60042 5.61283 5.70879 5.89034 5.90238 6.36436 6.43722 7.06425 7.20630 7.93720 8.43261 9.21002 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021307 B = 0.002871 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.776276 B = 9750.280352 C = 9962.399857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.078 3.922 3 H 0.066 0.934 4 O -0.389 6.389 5 C 0.043 3.957 6 C -0.143 4.143 7 C -0.139 4.139 8 H 0.131 0.869 9 C 0.521 3.479 10 O -0.581 6.581 11 N -0.598 5.598 12 C 0.111 3.889 13 C -0.111 4.111 14 C -0.042 4.042 15 C -0.119 4.119 16 C 0.182 3.818 17 N -0.609 5.609 18 C -0.258 4.258 19 H 0.060 0.940 20 C -0.047 4.047 21 N -0.929 5.929 22 Si 0.958 3.042 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.142 3.858 27 C -0.111 4.111 28 C -0.118 4.118 29 C 0.104 3.896 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.041 0.959 42 H 0.064 0.936 43 H 0.043 0.957 44 H 0.010 0.990 45 H 0.248 0.752 46 H 0.024 0.976 47 H 0.043 0.957 48 H 0.049 0.951 49 H 0.076 0.924 50 H 0.071 0.929 51 H 0.076 0.924 52 H 0.108 0.892 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.896 6.970 16.331 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.021 3.979 3 H 0.084 0.916 4 O -0.309 6.309 5 C -0.034 4.034 6 C -0.181 4.181 7 C -0.161 4.161 8 H 0.149 0.851 9 C 0.310 3.690 10 O -0.461 6.461 11 N -0.329 5.329 12 C -0.011 4.011 13 C -0.149 4.149 14 C -0.042 4.042 15 C -0.158 4.158 16 C 0.056 3.944 17 N -0.333 5.333 18 C -0.389 4.389 19 H 0.078 0.922 20 C -0.243 4.243 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.195 1.195 24 H -0.220 1.220 25 H -0.219 1.219 26 C 0.016 3.984 27 C -0.150 4.150 28 C -0.156 4.156 29 C -0.018 4.018 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.135 0.865 35 H 0.130 0.870 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.061 0.939 44 H 0.028 0.972 45 H 0.057 0.943 46 H 0.042 0.958 47 H 0.062 0.938 48 H 0.068 0.932 49 H 0.094 0.906 50 H 0.089 0.911 51 H 0.094 0.906 52 H 0.126 0.874 53 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.005 7.505 16.604 18.467 hybrid contribution 0.290 -0.287 -1.706 1.754 sum -2.715 7.218 14.898 16.776 Atomic orbital electron populations 1.21909 0.91885 1.03536 1.02992 1.22745 0.96286 0.95851 0.83066 0.91583 1.88852 1.40322 1.67971 1.33751 1.23689 0.86987 0.96708 0.95968 1.23315 1.00721 0.97920 0.96103 1.22758 0.99705 0.96393 0.97209 0.85072 1.20731 0.79559 0.87826 0.80854 1.90644 1.62899 1.20530 1.72070 1.48115 1.49748 1.12731 1.22325 1.21617 0.91310 0.93669 0.94498 1.21885 0.96186 0.95637 1.01212 1.20321 0.95164 0.94572 0.94164 1.22121 0.99262 0.98122 0.96264 1.20566 0.86427 0.89192 0.98191 1.44302 1.19206 1.62974 1.06806 1.19483 0.91912 1.33024 0.94475 0.92230 1.25655 0.96479 0.99755 1.02418 1.70159 1.02930 1.50409 1.34074 0.85347 0.77813 0.76800 0.81331 1.19513 1.22014 1.21868 1.21150 0.93528 0.95084 0.88597 1.21991 0.96207 0.96672 1.00165 1.21945 0.95328 0.99248 0.99069 1.22009 0.97991 0.80275 1.01532 0.90746 0.91665 0.90575 0.93238 0.86522 0.86979 0.88982 0.90108 0.91104 0.91282 0.90463 0.93998 0.91720 0.93870 0.97200 0.94265 0.95781 0.93847 0.93246 0.90597 0.91100 0.90559 0.87393 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.36 71.99 0.67 -1.71 16 2 C 0.08 1.65 3.67 30.97 0.11 1.76 16 3 H 0.07 1.75 6.43 -2.39 -0.02 1.73 16 4 O -0.39 -8.65 11.19 -148.98 -1.67 -10.32 16 5 C 0.04 0.74 7.72 72.67 0.56 1.30 16 6 C -0.14 -2.13 5.20 31.90 0.17 -1.96 16 7 C -0.14 -2.56 2.11 -10.55 -0.02 -2.59 16 8 H 0.13 1.92 7.40 -2.39 -0.02 1.90 16 9 C 0.52 12.66 6.99 87.66 0.61 13.27 16 10 O -0.58 -18.27 14.67 -3.03 -0.04 -18.32 16 11 N -0.60 -13.54 2.95 -818.84 -2.41 -15.95 16 12 C 0.11 2.63 5.96 86.36 0.51 3.14 16 13 C -0.11 -2.55 4.90 30.67 0.15 -2.40 16 14 C -0.04 -1.13 0.51 -52.13 -0.03 -1.16 16 15 C -0.12 -3.97 4.15 30.67 0.13 -3.84 16 16 C 0.18 7.99 4.84 86.36 0.42 8.40 16 17 N -0.61 -28.71 2.99 -698.26 -2.09 -30.80 16 18 C -0.26 -13.81 9.58 84.03 0.81 -13.01 16 19 H 0.06 3.17 7.89 -2.91 -0.02 3.14 16 20 C -0.05 -2.58 4.92 84.86 0.42 -2.17 16 21 N -0.93 -52.94 11.18 21.65 0.24 -52.70 16 22 Si 0.96 44.14 29.59 68.60 2.03 46.17 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 26 C 0.14 5.37 6.07 86.50 0.53 5.90 16 27 C -0.11 -3.31 4.92 30.81 0.15 -3.16 16 28 C -0.12 -2.83 4.06 30.68 0.12 -2.71 16 29 C 0.10 2.19 4.99 86.37 0.43 2.62 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.37 5.90 -2.39 -0.01 1.36 16 37 H 0.08 2.05 7.01 -2.39 -0.02 2.03 16 38 H 0.07 1.69 6.67 -2.39 -0.02 1.67 16 39 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.06 1.96 4.99 -2.39 -0.01 1.95 16 43 H 0.04 2.25 6.04 -2.39 -0.01 2.24 16 44 H 0.01 0.45 6.72 -2.39 -0.02 0.43 16 45 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 46 H 0.02 0.90 6.66 -2.39 -0.02 0.88 16 47 H 0.04 1.68 7.93 -2.39 -0.02 1.66 16 48 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 49 H 0.08 1.86 8.14 -2.39 -0.02 1.85 16 50 H 0.07 2.07 4.97 -2.38 -0.01 2.05 16 51 H 0.08 1.58 7.49 -2.39 -0.02 1.56 16 52 H 0.11 1.75 4.74 -2.39 -0.01 1.74 16 53 H 0.07 1.64 6.73 -2.39 -0.02 1.62 16 Total: -1.00 -65.93 379.29 2.70 -63.23 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: 0.90 Total: 17.01 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 5.74 Total: 1.68 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -4.26 Total: -99.45 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -1.71 Total: -28.64 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -65.93 2.70 -63.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957626566.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.767 kcal (2) G-P(sol) polarization free energy of solvation -65.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds