Wall clock time and date at job start Tue Mar 31 2020 21:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.42165 * 2 1 4 4 O 1.44427 * 110.37451 * 237.68800 * 2 1 3 5 5 C 1.44424 * 105.27549 * 200.65667 * 4 2 1 6 6 C 1.54474 * 104.80488 * 40.51229 * 5 4 2 7 7 C 1.54480 * 110.37448 * 122.30866 * 2 1 3 8 8 H 1.09000 * 110.51170 * 261.59295 * 7 2 1 9 9 C 1.50699 * 110.51218 * 24.16543 * 7 2 1 10 10 O 1.21283 * 120.00342 * 88.63018 * 9 7 2 11 11 N 1.34779 * 120.00368 * 268.63660 * 9 7 2 12 12 C 1.46920 * 120.64174 * 175.11310 * 11 9 7 13 13 C 1.53189 * 108.78079 * 126.35487 * 12 11 9 14 14 C 1.53034 * 109.34021 * 54.61772 * 13 12 11 15 15 C 1.53043 * 109.43667 * 178.76907 * 14 13 12 16 16 C 1.53195 * 109.32632 * 301.31067 * 15 14 13 17 17 N 1.46928 * 108.77093 * 305.35608 * 16 15 14 18 18 C 1.36933 * 120.63872 * 233.62086 * 17 16 15 19 19 H 1.07997 * 120.00236 * 30.19722 * 18 17 16 20 20 C 1.38811 * 119.99847 * 210.19816 * 18 17 16 21 21 N 1.31620 * 120.00096 * 11.01688 * 20 18 17 22 22 Si 1.86803 * 120.00296 * 191.02002 * 20 18 17 23 23 H 1.48505 * 109.46579 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47225 * 119.99674 * 22 20 18 25 25 H 1.48498 * 109.47207 * 240.00217 * 22 20 18 26 26 C 1.46920 * 118.71892 * 53.64399 * 17 16 15 27 27 C 1.53031 * 109.45699 * 58.70086 * 14 13 12 28 28 C 1.53048 * 109.54465 * 298.70277 * 14 13 12 29 29 C 1.46929 * 120.63396 * 355.09641 * 11 9 7 30 30 H 1.09003 * 109.47052 * 301.33702 * 1 2 3 31 31 H 1.08997 * 109.46878 * 61.34142 * 1 2 3 32 32 H 1.09001 * 109.46941 * 181.34107 * 1 2 3 33 33 H 1.08993 * 110.37009 * 159.34789 * 5 4 2 34 34 H 1.09004 * 110.37123 * 281.67883 * 5 4 2 35 35 H 1.09002 * 110.51147 * 217.37304 * 6 5 4 36 36 H 1.09003 * 110.50993 * 94.66401 * 6 5 4 37 37 H 1.08996 * 109.58773 * 6.56367 * 12 11 9 38 38 H 1.09007 * 109.58362 * 246.14085 * 12 11 9 39 39 H 1.09004 * 109.49153 * 174.57388 * 13 12 11 40 40 H 1.08999 * 109.49534 * 294.65206 * 13 12 11 41 41 H 1.08996 * 109.49919 * 61.26415 * 15 14 13 42 42 H 1.08994 * 109.49662 * 181.35651 * 15 14 13 43 43 H 1.09003 * 109.58457 * 185.57202 * 16 15 14 44 44 H 1.09002 * 109.70322 * 65.21351 * 16 15 14 45 45 H 0.97002 * 120.00236 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.58625 * 186.58437 * 26 17 16 47 47 H 1.09000 * 109.70364 * 66.23343 * 26 17 16 48 48 H 1.08999 * 109.48930 * 178.64923 * 27 14 13 49 49 H 1.08994 * 109.49480 * 298.73752 * 27 14 13 50 50 H 1.08999 * 109.49162 * 181.27450 * 28 14 13 51 51 H 1.09003 * 109.49321 * 301.35024 * 28 14 13 52 52 H 1.09005 * 109.58760 * 113.87134 * 29 11 9 53 53 H 1.08999 * 109.70562 * 353.50870 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 -1.1443 5 6 3.3874 -1.0871 -0.7994 6 6 3.3178 -1.5056 0.6859 7 6 2.0678 -0.7740 1.2240 8 1 2.3407 -0.0840 2.0224 9 6 1.0445 -1.7666 1.7124 10 8 1.0199 -2.8885 1.2523 11 7 0.1564 -1.4076 2.6606 12 6 -0.9137 -2.3269 3.0707 13 6 -0.8619 -2.4966 4.5923 14 6 -0.9263 -1.1203 5.2582 15 6 -0.9056 -1.2890 6.7792 16 6 -2.0951 -2.1530 7.2097 17 7 -3.3297 -1.5525 6.6862 18 6 -4.3758 -1.2669 7.5223 19 1 -4.1877 -1.0091 8.5540 20 6 -5.6782 -1.3088 7.0437 21 7 -5.9281 -1.8280 5.8603 22 14 -7.0762 -0.6284 8.0791 23 1 -6.5348 -0.1054 9.3592 24 1 -7.7501 0.4697 7.3407 25 1 -8.0549 -1.7091 8.3609 26 6 -3.4202 -1.2649 5.2483 27 6 -2.2159 -0.4110 4.8392 28 6 0.2795 -0.2841 4.8231 29 6 0.2401 -0.0894 3.3042 30 1 -0.3633 0.5345 0.8778 31 1 -0.3633 0.4928 -0.9018 32 1 -0.3633 -1.0274 0.0241 33 1 3.7242 -1.9222 -1.4136 34 1 4.0525 -0.2323 -0.9221 35 1 4.2110 -1.1772 1.2175 36 1 3.1956 -2.5853 0.7732 37 1 -0.7686 -3.2943 2.5900 38 1 -1.8805 -1.9144 2.7818 39 1 -1.7090 -3.0992 4.9201 40 1 0.0676 -2.9928 4.8715 41 1 0.0234 -1.7739 7.0789 42 1 -0.9757 -0.3108 7.2547 43 1 -2.1418 -2.1944 8.2979 44 1 -1.9810 -3.1608 6.8102 45 1 -6.8381 -1.8570 5.5257 46 1 -4.3414 -0.7198 5.0419 47 1 -3.4142 -2.1984 4.6856 48 1 -2.2739 0.5594 5.3320 49 1 -2.2194 -0.2713 3.7582 50 1 0.2448 0.6878 5.3155 51 1 1.1989 -0.7999 5.1001 52 1 -0.6328 0.5050 3.0345 53 1 1.1456 0.4221 2.9778 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957626567.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:07 Heat of formation + Delta-G solvation = -78.366087 kcal Electronic energy + Delta-G solvation = -31825.337338 eV Core-core repulsion = 27889.432923 eV Total energy + Delta-G solvation = -3935.904416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.08800 -40.74707 -39.17779 -37.35047 -35.21809 -33.72905 -32.93201 -32.41525 -31.95233 -31.49994 -29.54221 -27.50714 -26.65089 -24.94633 -24.49986 -23.62901 -23.05990 -22.81290 -21.84360 -19.98583 -19.16972 -18.72554 -17.94011 -17.45365 -17.15920 -16.85266 -16.47971 -16.06158 -16.02489 -15.71911 -15.43543 -15.23805 -15.08640 -14.91292 -14.59887 -14.55630 -14.10443 -13.81687 -13.62507 -13.35385 -13.22956 -13.18970 -12.91246 -12.85676 -12.73668 -12.71204 -12.55081 -12.26137 -12.17667 -12.13860 -11.98710 -11.90989 -11.87341 -11.73499 -11.65667 -11.17227 -11.03713 -10.93668 -10.80774 -10.54884 -10.47481 -9.55875 -8.57015 -7.83510 -5.33043 1.45167 1.46866 1.56949 1.58438 1.98399 2.51342 2.92841 3.30665 3.36036 3.56576 3.72984 3.76724 3.78338 3.85302 3.92523 4.08372 4.16292 4.18806 4.27807 4.33294 4.36965 4.39808 4.46558 4.52594 4.61993 4.63930 4.67820 4.72683 4.76630 4.79458 4.85503 4.88071 4.92652 4.95927 4.96873 5.05922 5.07416 5.11525 5.15229 5.16849 5.19980 5.36531 5.41617 5.46956 5.49007 5.59363 5.65749 5.69380 5.90339 5.91099 6.43986 6.47222 7.18571 7.19645 7.91589 8.42625 9.20917 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024698 B = 0.002823 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.445844 B = 9917.845258 C =10307.226844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.088 3.912 3 H 0.116 0.884 4 O -0.400 6.400 5 C 0.044 3.956 6 C -0.143 4.143 7 C -0.143 4.143 8 H 0.144 0.856 9 C 0.524 3.476 10 O -0.589 6.589 11 N -0.600 5.600 12 C 0.119 3.881 13 C -0.112 4.112 14 C -0.042 4.042 15 C -0.109 4.109 16 C 0.139 3.861 17 N -0.609 5.609 18 C -0.257 4.257 19 H 0.063 0.937 20 C -0.052 4.052 21 N -0.936 5.936 22 Si 0.966 3.034 23 H -0.266 1.266 24 H -0.290 1.290 25 H -0.295 1.295 26 C 0.180 3.820 27 C -0.117 4.117 28 C -0.116 4.116 29 C 0.098 3.902 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.031 0.969 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.010 0.990 45 H 0.248 0.752 46 H 0.048 0.952 47 H -0.006 1.006 48 H 0.053 0.947 49 H 0.065 0.935 50 H 0.093 0.907 51 H 0.074 0.926 52 H 0.079 0.921 53 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.664 8.811 -8.584 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.031 3.969 3 H 0.134 0.866 4 O -0.320 6.320 5 C -0.032 4.032 6 C -0.181 4.181 7 C -0.164 4.164 8 H 0.161 0.839 9 C 0.314 3.686 10 O -0.470 6.470 11 N -0.332 5.332 12 C -0.004 4.004 13 C -0.150 4.150 14 C -0.043 4.043 15 C -0.148 4.148 16 C 0.014 3.986 17 N -0.333 5.333 18 C -0.388 4.388 19 H 0.081 0.919 20 C -0.247 4.247 21 N -0.583 5.583 22 Si 0.794 3.206 23 H -0.191 1.191 24 H -0.217 1.217 25 H -0.222 1.222 26 C 0.054 3.946 27 C -0.155 4.155 28 C -0.154 4.154 29 C -0.023 4.023 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.050 0.950 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.132 0.868 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.028 0.972 45 H 0.057 0.943 46 H 0.066 0.934 47 H 0.012 0.988 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.111 0.889 51 H 0.093 0.907 52 H 0.097 0.903 53 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 21.380 8.161 -9.061 24.613 hybrid contribution -1.624 -0.556 0.689 1.850 sum 19.756 7.605 -8.372 22.765 Atomic orbital electron populations 1.21998 0.93882 1.01535 1.03980 1.23063 0.94986 0.96166 0.82729 0.86635 1.89158 1.28851 1.75167 1.38852 1.23564 0.83819 1.01001 0.94802 1.22985 0.97140 1.01232 0.96710 1.22990 0.94775 0.97615 1.00989 0.83877 1.20800 0.81729 0.88087 0.78025 1.90660 1.73509 1.23752 1.59038 1.48161 1.29190 1.17540 1.38293 1.21398 0.89905 0.93978 0.95110 1.21847 1.01350 0.97850 0.93938 1.20345 0.94999 0.94259 0.94662 1.21899 0.97588 1.00205 0.95136 1.21078 0.86853 0.94045 0.96672 1.44270 1.13227 1.71217 1.04581 1.19534 0.85922 1.39068 0.94242 0.91895 1.25851 0.99752 1.00552 0.98547 1.70158 1.19081 1.48774 1.20245 0.85224 0.79403 0.77282 0.78657 1.19065 1.21664 1.22212 1.20574 0.95980 0.94924 0.83094 1.22101 0.95110 0.98644 0.99676 1.21954 0.97199 1.01158 0.95048 1.22166 1.04479 0.82926 0.92706 0.89002 0.91029 0.94990 0.89239 0.89183 0.86797 0.91910 0.91646 0.91959 0.92743 0.91874 0.90741 0.92179 0.93656 0.97217 0.94324 0.93405 0.98839 0.92834 0.91672 0.88876 0.90741 0.90280 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.05 8.54 71.98 0.61 -2.43 16 2 C 0.09 1.46 3.83 31.10 0.12 1.58 16 3 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 4 O -0.40 -8.97 11.34 -148.98 -1.69 -10.66 16 5 C 0.04 0.68 7.63 72.48 0.55 1.23 16 6 C -0.14 -2.23 6.61 31.61 0.21 -2.02 16 7 C -0.14 -2.31 2.78 -10.52 -0.03 -2.34 16 8 H 0.14 1.21 5.91 -2.39 -0.01 1.19 16 9 C 0.52 13.32 4.64 87.66 0.41 13.73 16 10 O -0.59 -20.85 15.08 -3.04 -0.05 -20.90 16 11 N -0.60 -14.05 2.65 -818.92 -2.17 -16.22 16 12 C 0.12 3.56 5.97 86.36 0.52 4.07 16 13 C -0.11 -3.40 4.14 30.67 0.13 -3.27 16 14 C -0.04 -1.18 0.51 -52.13 -0.03 -1.20 16 15 C -0.11 -3.32 4.90 30.67 0.15 -3.17 16 16 C 0.14 5.62 6.04 86.36 0.52 6.14 16 17 N -0.61 -30.04 2.99 -699.09 -2.09 -32.13 16 18 C -0.26 -14.08 9.60 84.03 0.81 -13.27 16 19 H 0.06 3.38 7.85 -2.91 -0.02 3.36 16 20 C -0.05 -2.91 5.05 84.86 0.43 -2.48 16 21 N -0.94 -55.54 10.98 21.65 0.24 -55.30 16 22 Si 0.97 44.98 29.57 68.60 2.03 47.00 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 26 C 0.18 8.40 4.79 86.36 0.41 8.81 16 27 C -0.12 -3.93 4.14 30.67 0.13 -3.80 16 28 C -0.12 -2.14 4.90 30.67 0.15 -1.99 16 29 C 0.10 1.60 4.67 86.36 0.40 2.00 16 30 H 0.09 1.43 6.39 -2.39 -0.02 1.42 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.03 0.85 6.81 -2.39 -0.02 0.84 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.06 1.40 6.84 -2.39 -0.02 1.39 16 37 H 0.07 2.22 7.00 -2.39 -0.02 2.21 16 38 H 0.06 1.99 6.73 -2.38 -0.02 1.98 16 39 H 0.05 2.04 4.99 -2.39 -0.01 2.03 16 40 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 43 H 0.04 1.83 7.93 -2.39 -0.02 1.81 16 44 H 0.01 0.42 6.68 -2.39 -0.02 0.40 16 45 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 46 H 0.05 2.60 6.02 -2.38 -0.01 2.59 16 47 H -0.01 -0.33 6.73 -2.39 -0.02 -0.34 16 48 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.06 1.98 4.99 -2.39 -0.01 1.97 16 50 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.08 1.29 6.18 -2.38 -0.01 1.28 16 53 H 0.12 1.04 5.33 -2.39 -0.01 1.03 16 Total: -1.00 -74.02 376.92 2.66 -71.36 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: 0.90 Total: 15.25 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 5.49 Total: 1.59 kcal Atomic # 7 Polarization: -99.63 SS G_CDS: -4.02 Total: -103.65 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -1.74 Total: -31.56 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -74.02 2.66 -71.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957626567.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.006 kcal (2) G-P(sol) polarization free energy of solvation -74.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds