Wall clock time and date at job start Tue Mar 31 2020 21:30:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 110.41904 * 2 1 4 4 O 1.44431 * 110.37322 * 122.31148 * 2 1 3 5 5 C 1.44422 * 105.27318 * 159.34283 * 4 2 1 6 6 C 1.54477 * 104.80607 * 319.48798 * 5 4 2 7 7 C 1.54483 * 110.37152 * 237.69123 * 2 1 3 8 8 H 1.08997 * 110.50950 * 98.54592 * 7 2 1 9 9 C 1.50698 * 110.51361 * 335.83243 * 7 2 1 10 10 O 1.21278 * 119.99992 * 276.74604 * 9 7 2 11 11 N 1.34780 * 119.99604 * 96.73690 * 9 7 2 12 12 C 1.46921 * 120.64465 * 4.24845 * 11 9 7 13 13 C 1.52759 * 109.01674 * 233.60664 * 12 11 9 14 14 C 1.53034 * 109.40293 * 305.59946 * 13 12 11 15 15 C 1.53041 * 109.43874 * 181.11604 * 14 13 12 16 16 C 1.53187 * 109.32882 * 58.68923 * 15 14 13 17 17 N 1.46930 * 108.77274 * 54.64352 * 16 15 14 18 18 C 1.36939 * 120.63952 * 126.37784 * 17 16 15 19 19 H 1.08000 * 119.99865 * 328.82681 * 18 17 16 20 20 C 1.38804 * 119.99682 * 148.82311 * 18 17 16 21 21 N 1.31620 * 120.00204 * 161.31719 * 20 18 17 22 22 Si 1.86804 * 120.00313 * 341.31985 * 20 18 17 23 23 H 1.48498 * 109.47244 * 92.26743 * 22 20 18 24 24 H 1.48501 * 109.47181 * 212.26857 * 22 20 18 25 25 H 1.48500 * 109.46807 * 332.26697 * 22 20 18 26 26 C 1.46926 * 118.71754 * 306.35914 * 17 16 15 27 27 C 1.53030 * 109.45693 * 301.18144 * 14 13 12 28 28 C 1.53053 * 109.54519 * 61.17271 * 14 13 12 29 29 C 1.46933 * 120.63835 * 184.51695 * 11 9 7 30 30 H 1.09003 * 109.47362 * 300.30834 * 1 2 3 31 31 H 1.08994 * 109.47317 * 60.31032 * 1 2 3 32 32 H 1.09006 * 109.47228 * 180.31040 * 1 2 3 33 33 H 1.09007 * 110.37216 * 78.31937 * 5 4 2 34 34 H 1.09001 * 110.37411 * 200.65550 * 5 4 2 35 35 H 1.08996 * 110.51052 * 265.33240 * 6 5 4 36 36 H 1.09005 * 110.63150 * 142.68107 * 6 5 4 37 37 H 1.09001 * 109.58862 * 353.44143 * 12 11 9 38 38 H 1.08999 * 109.59047 * 113.86425 * 12 11 9 39 39 H 1.09001 * 109.56922 * 185.55695 * 13 12 11 40 40 H 1.09005 * 109.37725 * 65.52579 * 13 12 11 41 41 H 1.09005 * 109.49272 * 178.64541 * 15 14 13 42 42 H 1.09001 * 109.49130 * 298.72728 * 15 14 13 43 43 H 1.08995 * 109.58536 * 294.85217 * 16 15 14 44 44 H 1.09007 * 109.58374 * 174.43135 * 16 15 14 45 45 H 0.96995 * 120.00436 * 180.02562 * 21 20 18 46 46 H 1.08994 * 109.58484 * 293.83502 * 26 17 16 47 47 H 1.08993 * 109.58170 * 173.41769 * 26 17 16 48 48 H 1.09006 * 109.49525 * 61.26234 * 27 14 13 49 49 H 1.08997 * 109.49454 * 181.34566 * 27 14 13 50 50 H 1.09000 * 109.48843 * 178.72381 * 28 14 13 51 51 H 1.09001 * 109.51506 * 58.65971 * 28 14 13 52 52 H 1.09000 * 109.59157 * 246.11911 * 29 11 9 53 53 H 1.09002 * 109.58565 * 6.41215 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 8 2.0328 -0.7237 1.1443 5 6 3.3873 -1.0872 0.7994 6 6 3.3177 -1.5057 -0.6859 7 6 2.0677 -0.7740 -1.2240 8 1 2.3429 -0.0839 -2.0215 9 6 1.0444 -1.7666 -1.7124 10 8 0.9557 -2.8552 -1.1853 11 7 0.2276 -1.4444 -2.7350 12 6 0.3836 -0.1671 -3.4441 13 6 -0.9563 0.5665 -3.4488 14 6 -2.0351 -0.3489 -4.0321 15 6 -3.3722 0.3950 -4.0629 16 6 -3.2268 1.6644 -4.9080 17 7 -2.7121 1.2938 -6.2334 18 6 -3.3692 1.6814 -7.3706 19 1 -4.4431 1.7959 -7.3613 20 6 -2.6549 1.9273 -8.5351 21 7 -3.2733 1.9365 -9.6969 22 14 -0.8159 2.2450 -8.4534 23 1 -0.0841 0.9646 -8.6272 24 1 -0.4279 3.1874 -9.5335 25 1 -0.4738 2.8357 -7.1346 26 6 -1.4787 0.4995 -6.3150 27 6 -1.6432 -0.7568 -5.4540 28 6 -2.1697 -1.6008 -3.1620 29 6 -0.8398 -2.3611 -3.1582 30 1 -0.3634 0.5186 0.8872 31 1 -0.3633 0.5090 -0.8927 32 1 -0.3634 -1.0277 0.0056 33 1 4.0525 -0.2323 0.9221 34 1 3.7242 -1.9223 1.4136 35 1 3.1956 -2.5852 -0.7732 36 1 4.2105 -1.1790 -1.2192 37 1 1.1310 0.4433 -2.9373 38 1 0.6975 -0.3551 -4.4708 39 1 -0.8768 1.4680 -4.0563 40 1 -1.2233 0.8384 -2.4275 41 1 -4.1361 -0.2478 -4.5005 42 1 -3.6616 0.6652 -3.0474 43 1 -2.5299 2.3481 -4.4234 44 1 -4.1991 2.1455 -5.0149 45 1 -2.7742 2.1080 -10.5107 46 1 -0.6397 1.0887 -5.9451 47 1 -1.2974 0.2117 -7.3504 48 1 -0.7020 -1.3060 -5.4286 49 1 -2.4226 -1.3894 -5.8788 50 1 -2.9538 -2.2414 -3.5654 51 1 -2.4256 -1.3103 -2.1431 52 1 -0.6276 -2.7310 -4.1613 53 1 -0.8979 -3.1996 -2.4642 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957626568.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:12 Heat of formation + Delta-G solvation = -75.694241 kcal Electronic energy + Delta-G solvation = -32196.217364 eV Core-core repulsion = 28260.428809 eV Total energy + Delta-G solvation = -3935.788556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.15733 -40.82348 -39.24711 -37.45588 -35.20896 -33.88773 -33.15757 -32.48454 -32.03559 -31.85383 -29.76530 -27.59743 -26.50549 -24.90556 -24.44248 -24.07270 -23.17279 -23.01701 -21.61194 -20.16272 -19.30133 -18.77308 -18.17457 -17.34469 -17.18530 -17.00295 -16.48219 -16.31255 -15.93645 -15.80470 -15.49545 -15.42632 -15.27725 -15.08988 -14.69414 -14.47627 -14.24974 -13.91831 -13.62032 -13.56675 -13.44250 -13.32217 -13.25764 -13.00905 -12.76981 -12.70844 -12.44314 -12.28229 -12.14901 -12.10135 -12.01772 -11.94757 -11.91901 -11.70180 -11.53692 -11.27202 -11.12387 -11.02506 -10.83232 -10.59962 -10.55396 -9.58904 -8.77529 -8.14049 -5.48556 1.32818 1.43350 1.53405 1.55445 1.96958 2.45293 2.91418 3.10791 3.34588 3.41916 3.54136 3.69497 3.72862 3.79290 3.88067 4.02297 4.13606 4.14809 4.21957 4.31178 4.33888 4.35129 4.41867 4.44821 4.50366 4.55234 4.59808 4.65051 4.69210 4.70463 4.77015 4.84025 4.85747 4.88790 4.91048 4.94677 5.03086 5.06442 5.08914 5.12139 5.13204 5.20274 5.29712 5.31366 5.39089 5.45349 5.56816 5.69011 5.88552 5.93702 6.17208 6.41681 6.99042 7.16189 7.67921 8.09130 9.06510 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019984 B = 0.003310 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.796395 B = 8456.234641 C = 8825.885032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.088 3.912 3 H 0.109 0.891 4 O -0.397 6.397 5 C 0.044 3.956 6 C -0.141 4.141 7 C -0.149 4.149 8 H 0.135 0.865 9 C 0.528 3.472 10 O -0.582 6.582 11 N -0.601 5.601 12 C 0.099 3.901 13 C -0.127 4.127 14 C -0.042 4.042 15 C -0.114 4.114 16 C 0.143 3.857 17 N -0.618 5.618 18 C -0.247 4.247 19 H 0.042 0.958 20 C -0.038 4.038 21 N -0.964 5.964 22 Si 0.951 3.049 23 H -0.275 1.275 24 H -0.315 1.315 25 H -0.249 1.249 26 C 0.125 3.875 27 C -0.117 4.117 28 C -0.111 4.111 29 C 0.112 3.888 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.038 0.962 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.045 0.955 42 H 0.082 0.918 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.260 0.740 46 H 0.043 0.957 47 H 0.038 0.962 48 H 0.075 0.925 49 H 0.046 0.954 50 H 0.074 0.926 51 H 0.070 0.930 52 H 0.070 0.930 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.215 -3.612 20.722 25.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.030 3.970 3 H 0.126 0.874 4 O -0.317 6.317 5 C -0.032 4.032 6 C -0.179 4.179 7 C -0.170 4.170 8 H 0.153 0.847 9 C 0.318 3.682 10 O -0.463 6.463 11 N -0.333 5.333 12 C -0.023 4.023 13 C -0.164 4.164 14 C -0.042 4.042 15 C -0.153 4.153 16 C 0.019 3.981 17 N -0.343 5.343 18 C -0.377 4.377 19 H 0.060 0.940 20 C -0.232 4.232 21 N -0.610 5.610 22 Si 0.779 3.221 23 H -0.202 1.202 24 H -0.245 1.245 25 H -0.173 1.173 26 C 0.000 4.000 27 C -0.156 4.156 28 C -0.149 4.149 29 C -0.010 4.010 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.094 0.906 49 H 0.064 0.936 50 H 0.092 0.908 51 H 0.089 0.911 52 H 0.089 0.911 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.043 -4.204 21.049 25.651 hybrid contribution 0.155 -0.019 -1.183 1.194 sum 14.198 -4.223 19.866 24.781 Atomic orbital electron populations 1.22048 0.93461 1.01925 1.04000 1.23030 0.95406 0.95860 0.82714 0.87365 1.89153 1.28689 1.75076 1.38767 1.23549 0.83894 1.00962 0.94772 1.22970 0.97032 1.01190 0.96738 1.23008 0.95181 0.97816 1.00961 0.84686 1.20620 0.81736 0.87483 0.78350 1.90662 1.71770 1.25452 1.58388 1.48154 1.32132 1.20101 1.32928 1.21988 0.98714 0.83785 0.97829 1.22029 0.93829 0.98485 1.02088 1.20322 0.95243 0.94970 0.93650 1.21931 0.96415 0.97116 0.99802 1.21135 0.97429 0.95214 0.84349 1.44421 1.27817 1.60077 1.01981 1.18815 0.90779 1.39548 0.88554 0.94007 1.26063 1.02554 0.99715 0.94911 1.69975 1.38163 1.54710 0.98147 0.85813 0.81459 0.77455 0.77359 1.20170 1.24462 1.17260 1.21383 0.88512 0.92196 0.97884 1.22037 1.01090 0.97194 0.95306 1.21867 0.96465 0.96439 1.00105 1.21570 0.86569 0.92550 1.00314 0.91002 0.89028 0.94252 0.89562 0.88972 0.91692 0.87169 0.86974 0.90802 0.90333 0.89820 0.93630 0.89998 0.93766 0.93698 0.93110 0.93934 0.94374 0.90632 0.93559 0.90763 0.91115 0.91140 0.90630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 8.68 71.98 0.62 -2.12 16 2 C 0.09 1.40 3.83 31.10 0.12 1.52 16 3 H 0.11 1.13 8.14 -2.39 -0.02 1.12 16 4 O -0.40 -8.47 11.34 -148.98 -1.69 -10.16 16 5 C 0.04 0.65 7.63 72.48 0.55 1.21 16 6 C -0.14 -2.11 6.59 31.61 0.21 -1.90 16 7 C -0.15 -2.33 2.79 -10.52 -0.03 -2.36 16 8 H 0.14 1.30 5.87 -2.39 -0.01 1.28 16 9 C 0.53 11.96 4.55 87.66 0.40 12.36 16 10 O -0.58 -18.24 15.13 -3.02 -0.05 -18.29 16 11 N -0.60 -12.05 2.89 -819.75 -2.37 -14.42 16 12 C 0.10 1.64 5.29 86.22 0.46 2.10 16 13 C -0.13 -2.45 4.05 30.53 0.12 -2.33 16 14 C -0.04 -0.99 0.51 -52.13 -0.03 -1.02 16 15 C -0.11 -3.11 4.90 30.67 0.15 -2.96 16 16 C 0.14 4.97 6.05 86.36 0.52 5.49 16 17 N -0.62 -27.08 2.72 -699.13 -1.90 -28.98 16 18 C -0.25 -13.71 10.01 84.03 0.84 -12.87 16 19 H 0.04 2.60 8.06 -2.91 -0.02 2.57 16 20 C -0.04 -2.19 5.24 84.86 0.44 -1.75 16 21 N -0.96 -60.44 13.97 21.65 0.30 -60.14 16 22 Si 0.95 44.69 24.38 68.60 1.67 46.37 16 23 H -0.28 -12.20 6.67 99.48 0.66 -11.54 16 24 H -0.32 -15.33 7.11 99.48 0.71 -14.63 16 25 H -0.25 -10.67 6.67 99.48 0.66 -10.00 16 26 C 0.12 4.74 3.74 86.36 0.32 5.06 16 27 C -0.12 -3.48 4.14 30.67 0.13 -3.35 16 28 C -0.11 -2.33 4.90 30.67 0.15 -2.18 16 29 C 0.11 2.46 5.96 86.36 0.51 2.97 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.32 5.27 -2.39 -0.01 1.30 16 32 H 0.04 0.92 6.81 -2.38 -0.02 0.91 16 33 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.06 1.34 6.96 -2.39 -0.02 1.32 16 36 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.11 1.22 5.33 -2.39 -0.01 1.21 16 38 H 0.07 1.32 6.73 -2.39 -0.02 1.30 16 39 H 0.08 1.75 4.99 -2.39 -0.01 1.74 16 40 H 0.08 1.36 5.97 -2.38 -0.01 1.35 16 41 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.04 1.38 6.66 -2.39 -0.02 1.36 16 44 H 0.04 1.67 7.93 -2.38 -0.02 1.65 16 45 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 46 H 0.04 1.48 5.61 -2.39 -0.01 1.46 16 47 H 0.04 1.68 4.86 -2.39 -0.01 1.67 16 48 H 0.08 1.93 5.00 -2.38 -0.01 1.92 16 49 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 52 H 0.07 1.54 6.66 -2.39 -0.02 1.52 16 53 H 0.08 1.87 7.03 -2.39 -0.02 1.85 16 Total: -1.00 -74.06 369.19 2.30 -71.76 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.83 Total: 15.97 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 5.50 Total: -2.12 kcal Atomic # 7 Polarization: -99.57 SS G_CDS: -3.97 Total: -103.53 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -1.74 Total: -28.45 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.67 Total: 46.37 kcal Total: -74.06 2.30 -71.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957626568.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.936 kcal (2) G-P(sol) polarization free energy of solvation -74.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds