Wall clock time and date at job start Tue Mar 31 2020 21:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.82559 * 2 1 4 4 O 1.43233 * 109.83284 * 239.10878 * 2 1 3 5 5 C 1.43654 * 109.97117 * 242.20221 * 4 2 1 6 6 C 1.54943 * 105.22076 * 335.51985 * 5 4 2 7 7 C 1.54386 * 109.82635 * 120.97277 * 2 1 3 8 8 H 1.09004 * 110.84784 * 22.48295 * 7 2 1 9 9 C 1.50703 * 110.85074 * 259.06140 * 7 2 1 10 10 O 1.21279 * 119.99699 * 0.02562 * 9 7 2 11 11 N 1.34767 * 119.99972 * 180.02562 * 9 7 2 12 12 C 1.46928 * 120.64592 * 359.71854 * 11 9 7 13 13 C 1.52762 * 109.01856 * 233.61325 * 12 11 9 14 14 C 1.53026 * 109.40139 * 305.60013 * 13 12 11 15 15 C 1.53047 * 109.43617 * 181.11996 * 14 13 12 16 16 C 1.53184 * 109.33292 * 58.68378 * 15 14 13 17 17 N 1.46933 * 108.76930 * 54.64417 * 16 15 14 18 18 C 1.36939 * 120.63854 * 126.37741 * 17 16 15 19 19 H 1.08000 * 119.99840 * 332.61394 * 18 17 16 20 20 C 1.38811 * 119.99895 * 152.61198 * 18 17 16 21 21 N 1.31620 * 120.00259 * 159.36515 * 20 18 17 22 22 Si 1.86798 * 120.00116 * 339.36395 * 20 18 17 23 23 H 1.48505 * 109.47173 * 92.91335 * 22 20 18 24 24 H 1.48494 * 109.47544 * 212.91637 * 22 20 18 25 25 H 1.48500 * 109.47156 * 332.91952 * 22 20 18 26 26 C 1.46919 * 118.72335 * 306.36432 * 17 16 15 27 27 C 1.53029 * 109.45921 * 301.17760 * 14 13 12 28 28 C 1.53039 * 109.54708 * 61.17763 * 14 13 12 29 29 C 1.46931 * 120.64538 * 180.02562 * 11 9 7 30 30 H 1.08997 * 109.47143 * 179.43257 * 1 2 3 31 31 H 1.09001 * 109.47409 * 299.43870 * 1 2 3 32 32 H 1.09003 * 109.46725 * 59.43822 * 1 2 3 33 33 H 1.08998 * 110.31312 * 94.48470 * 5 4 2 34 34 H 1.09004 * 110.30625 * 216.55829 * 5 4 2 35 35 H 1.08998 * 111.12567 * 154.41302 * 6 5 4 36 36 H 1.09006 * 111.13017 * 278.57908 * 6 5 4 37 37 H 1.09001 * 109.58344 * 353.44876 * 12 11 9 38 38 H 1.09000 * 109.58968 * 113.87112 * 12 11 9 39 39 H 1.08999 * 109.56124 * 185.55608 * 13 12 11 40 40 H 1.08996 * 109.35781 * 65.51692 * 13 12 11 41 41 H 1.08996 * 109.49615 * 178.64984 * 15 14 13 42 42 H 1.09005 * 109.49260 * 298.73203 * 15 14 13 43 43 H 1.08997 * 109.58889 * 294.86132 * 16 15 14 44 44 H 1.08995 * 109.59136 * 174.42874 * 16 15 14 45 45 H 0.96998 * 120.00211 * 180.02562 * 21 20 18 46 46 H 1.09003 * 109.57984 * 293.83594 * 26 17 16 47 47 H 1.08997 * 109.58762 * 173.41430 * 26 17 16 48 48 H 1.09007 * 109.49211 * 61.26640 * 27 14 13 49 49 H 1.09001 * 109.49638 * 181.34537 * 27 14 13 50 50 H 1.09006 * 109.48934 * 178.72154 * 28 14 13 51 51 H 1.08994 * 109.49696 * 58.64125 * 28 14 13 52 52 H 1.08998 * 109.58896 * 246.12173 * 29 11 9 53 53 H 1.09010 * 109.58102 * 6.40246 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 8 2.0159 -0.6918 -1.1562 5 6 2.7747 -1.8440 -0.7558 6 6 3.2751 -1.5242 0.6753 7 6 2.0536 -0.7474 1.2453 8 1 1.2997 -1.4335 1.6314 9 6 2.4869 0.2251 2.3118 10 8 2.3947 1.4187 2.1177 11 7 2.9770 -0.2315 3.4812 12 6 3.0892 -1.6746 3.7338 13 6 2.3775 -2.0075 5.0439 14 6 2.9369 -1.1278 6.1641 15 6 2.2441 -1.4802 7.4825 16 6 2.4725 -2.9623 7.7951 17 7 3.9170 -3.2311 7.7822 18 6 4.5255 -3.8271 8.8544 19 1 4.1087 -3.7128 9.8441 20 6 5.6781 -4.5782 8.6691 21 7 6.4840 -4.8082 9.6840 22 14 6.0853 -5.2627 6.9794 23 1 6.9638 -4.3079 6.2571 24 1 6.7851 -6.5640 7.1279 25 1 4.8307 -5.4603 6.2099 26 6 4.6958 -2.8484 6.5966 27 6 4.4425 -1.3676 6.2969 28 6 2.6829 0.3448 5.8340 29 6 3.4031 0.7040 4.5311 30 1 -0.3633 -1.0276 -0.0102 31 1 -0.3634 0.5051 0.8950 32 1 -0.3633 0.5226 -0.8849 33 1 2.1401 -2.7301 -0.7455 34 1 3.6200 -1.9925 -1.4278 35 1 3.4600 -2.4380 1.2401 36 1 4.1641 -0.8940 0.6491 37 1 2.6239 -2.2258 2.9166 38 1 4.1406 -1.9512 3.8119 39 1 2.5389 -3.0569 5.2904 40 1 1.3096 -1.8196 4.9328 41 1 2.6588 -0.8709 8.2855 42 1 1.1749 -1.2876 7.3943 43 1 1.9801 -3.5751 7.0400 44 1 2.0663 -3.1950 8.7794 45 1 7.2896 -5.3327 9.5544 46 1 4.3842 -3.4522 5.7443 47 1 5.7569 -3.0057 6.7901 48 1 4.9378 -1.0952 5.3649 49 1 4.8374 -0.7591 7.1104 50 1 3.0615 0.9694 6.6431 51 1 1.6124 0.5117 5.7156 52 1 4.4806 0.6250 4.6755 53 1 3.1473 1.7225 4.2386 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000957626569.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:16 Heat of formation + Delta-G solvation = -79.623451 kcal Electronic energy + Delta-G solvation = -31766.550716 eV Core-core repulsion = 27830.591777 eV Total energy + Delta-G solvation = -3935.958939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.06928 -40.84250 -39.43218 -37.51104 -35.26201 -33.93193 -33.18349 -32.43529 -32.03441 -31.85579 -29.76248 -27.75577 -26.49239 -24.88725 -24.43880 -24.14706 -23.27950 -22.60543 -21.69406 -20.42887 -19.42764 -18.85041 -18.08536 -17.41099 -17.29513 -17.10299 -16.46547 -16.00760 -15.86335 -15.54465 -15.43436 -15.36549 -15.27523 -15.11705 -14.80217 -14.48240 -14.34358 -14.23570 -13.69825 -13.63078 -13.54877 -13.48452 -13.16655 -12.96629 -12.87247 -12.79378 -12.45610 -12.38246 -12.19055 -12.10111 -12.05706 -11.92060 -11.86342 -11.72690 -11.54411 -11.29630 -11.13273 -11.02213 -10.81338 -10.59159 -10.48312 -9.64055 -8.84114 -8.13576 -5.44332 1.31907 1.43433 1.49865 1.53142 1.89830 2.45030 2.77195 3.09246 3.31098 3.41221 3.45876 3.67649 3.72091 3.76191 3.83940 3.99940 4.09856 4.13076 4.20360 4.25546 4.33346 4.39019 4.40941 4.45487 4.50080 4.60280 4.61343 4.65842 4.66819 4.69650 4.75056 4.80853 4.84248 4.85392 4.91282 5.00265 5.01796 5.06565 5.07685 5.10725 5.15269 5.23311 5.27160 5.29647 5.35588 5.42100 5.53409 5.66717 5.90781 6.03233 6.15870 6.35320 6.97263 7.06368 7.68100 8.07552 9.06776 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.003326 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.049585 B = 8417.176697 C = 9296.456330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.088 3.912 3 H 0.072 0.928 4 O -0.399 6.399 5 C 0.047 3.953 6 C -0.143 4.143 7 C -0.137 4.137 8 H 0.135 0.865 9 C 0.526 3.474 10 O -0.581 6.581 11 N -0.598 5.598 12 C 0.100 3.900 13 C -0.125 4.125 14 C -0.043 4.043 15 C -0.114 4.114 16 C 0.143 3.857 17 N -0.618 5.618 18 C -0.246 4.246 19 H 0.045 0.955 20 C -0.041 4.041 21 N -0.963 5.963 22 Si 0.950 3.050 23 H -0.275 1.275 24 H -0.317 1.317 25 H -0.250 1.250 26 C 0.123 3.877 27 C -0.118 4.118 28 C -0.111 4.111 29 C 0.111 3.889 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.081 0.919 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.260 0.740 46 H 0.044 0.956 47 H 0.040 0.960 48 H 0.076 0.924 49 H 0.046 0.954 50 H 0.075 0.925 51 H 0.070 0.930 52 H 0.072 0.928 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.367 7.128 -20.211 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.030 3.970 3 H 0.090 0.910 4 O -0.319 6.319 5 C -0.029 4.029 6 C -0.181 4.181 7 C -0.158 4.158 8 H 0.153 0.847 9 C 0.315 3.685 10 O -0.461 6.461 11 N -0.329 5.329 12 C -0.021 4.021 13 C -0.163 4.163 14 C -0.044 4.044 15 C -0.153 4.153 16 C 0.019 3.981 17 N -0.343 5.343 18 C -0.376 4.376 19 H 0.063 0.937 20 C -0.235 4.235 21 N -0.610 5.610 22 Si 0.779 3.221 23 H -0.202 1.202 24 H -0.246 1.246 25 H -0.173 1.173 26 C -0.001 4.001 27 C -0.156 4.156 28 C -0.149 4.149 29 C -0.012 4.012 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.136 0.864 36 H 0.091 0.909 37 H 0.129 0.871 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.095 0.905 49 H 0.065 0.935 50 H 0.094 0.906 51 H 0.089 0.911 52 H 0.090 0.910 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.348 7.741 -20.453 24.638 hybrid contribution 0.881 -0.476 0.509 1.123 sum -10.467 7.265 -19.944 23.666 Atomic orbital electron populations 1.22078 0.93452 1.03212 1.02578 1.22568 0.95336 0.96040 0.83040 0.91019 1.88429 1.71449 1.41517 1.30516 1.23569 0.95761 0.88780 0.94747 1.23443 0.96215 1.01537 0.96892 1.22971 1.00766 0.97667 0.94374 0.84735 1.20541 0.76249 0.88841 0.82891 1.90670 1.57006 1.18368 1.80078 1.48101 1.62127 1.08000 1.14702 1.22015 1.02065 0.79318 0.98752 1.21952 1.00551 1.00386 0.93393 1.20340 0.94264 0.94877 0.94874 1.21932 1.00285 0.96645 0.96426 1.21126 0.82904 0.94774 0.99306 1.44442 1.04263 1.69489 1.16114 1.18854 1.07447 1.24002 0.87287 0.93725 1.25971 0.97475 0.99455 1.00643 1.69991 1.13522 1.43802 1.33652 0.85851 0.78445 0.76513 0.81306 1.20166 1.24605 1.17347 1.21403 0.94703 0.95066 0.88973 1.22042 0.96422 0.96337 1.00847 1.21860 1.00971 0.95597 0.96482 1.21617 0.99133 0.93663 0.86737 0.90850 0.91483 0.91868 0.89959 0.88435 0.86371 0.90857 0.87078 0.90633 0.90388 0.90239 0.93560 0.90039 0.93806 0.93658 0.93144 0.93858 0.94221 0.90543 0.93507 0.90621 0.91088 0.90951 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 9.44 71.98 0.68 -1.79 16 2 C 0.09 1.69 3.61 31.06 0.11 1.80 16 3 H 0.07 1.78 6.78 -2.39 -0.02 1.76 16 4 O -0.40 -7.93 11.02 -148.98 -1.64 -9.58 16 5 C 0.05 0.60 7.77 72.65 0.56 1.17 16 6 C -0.14 -1.77 5.82 32.14 0.19 -1.58 16 7 C -0.14 -2.12 1.89 -10.18 -0.02 -2.14 16 8 H 0.13 1.49 7.25 -2.39 -0.02 1.47 16 9 C 0.53 11.30 7.07 87.66 0.62 11.92 16 10 O -0.58 -17.01 14.83 -3.03 -0.04 -17.05 16 11 N -0.60 -11.50 2.98 -819.82 -2.44 -13.94 16 12 C 0.10 1.62 5.21 86.22 0.45 2.07 16 13 C -0.12 -2.42 4.13 30.52 0.13 -2.29 16 14 C -0.04 -1.02 0.51 -52.13 -0.03 -1.05 16 15 C -0.11 -3.10 4.90 30.67 0.15 -2.95 16 16 C 0.14 4.95 6.05 86.36 0.52 5.48 16 17 N -0.62 -26.99 2.77 -699.13 -1.94 -28.92 16 18 C -0.25 -13.61 10.04 84.03 0.84 -12.77 16 19 H 0.04 2.75 8.06 -2.91 -0.02 2.73 16 20 C -0.04 -2.37 5.23 84.86 0.44 -1.93 16 21 N -0.96 -60.26 13.97 21.65 0.30 -59.95 16 22 Si 0.95 44.51 24.35 68.60 1.67 46.18 16 23 H -0.27 -12.11 6.62 99.48 0.66 -11.45 16 24 H -0.32 -15.38 7.11 99.48 0.71 -14.67 16 25 H -0.25 -10.67 6.64 99.48 0.66 -10.01 16 26 C 0.12 4.64 3.73 86.36 0.32 4.96 16 27 C -0.12 -3.44 4.14 30.67 0.13 -3.32 16 28 C -0.11 -2.27 4.90 30.65 0.15 -2.12 16 29 C 0.11 2.31 5.96 86.34 0.51 2.82 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.12 0.90 6.71 -2.39 -0.02 0.89 16 36 H 0.07 1.10 8.04 -2.38 -0.02 1.08 16 37 H 0.11 1.19 4.60 -2.39 -0.01 1.18 16 38 H 0.08 1.29 6.73 -2.39 -0.02 1.27 16 39 H 0.08 1.74 4.99 -2.39 -0.01 1.73 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 43 H 0.04 1.36 6.66 -2.39 -0.02 1.35 16 44 H 0.04 1.67 7.93 -2.39 -0.02 1.66 16 45 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 46 H 0.04 1.49 5.66 -2.39 -0.01 1.47 16 47 H 0.04 1.74 4.49 -2.39 -0.01 1.73 16 48 H 0.08 1.91 5.00 -2.38 -0.01 1.90 16 49 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 51 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.07 1.50 6.66 -2.39 -0.02 1.48 16 53 H 0.08 1.86 7.01 -2.38 -0.02 1.84 16 Total: -1.00 -71.71 375.12 2.48 -69.23 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.81 Total: 15.74 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 5.77 Total: -1.70 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -4.08 Total: -102.82 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -1.69 Total: -26.63 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.67 Total: 46.18 kcal Total: -71.71 2.48 -69.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957626569.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.393 kcal (2) G-P(sol) polarization free energy of solvation -71.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds