Wall clock time and date at job start Tue Mar 31 2020 21:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46362 * 2 1 4 4 C 1.53077 * 109.43691 * 119.82645 * 2 1 3 5 5 C 1.53197 * 109.29172 * 181.23764 * 4 2 1 6 6 N 1.46922 * 108.89167 * 305.57408 * 5 4 2 7 7 C 1.36938 * 120.63490 * 233.51699 * 6 5 4 8 8 H 1.08003 * 119.99784 * 32.16444 * 7 6 5 9 9 C 1.38813 * 120.00460 * 212.17051 * 7 6 5 10 10 N 1.31613 * 120.00111 * 11.44026 * 9 7 6 11 11 Si 1.86803 * 119.99947 * 191.44518 * 9 7 6 12 12 H 1.48495 * 109.47300 * 89.99681 * 11 9 7 13 13 H 1.48501 * 109.46841 * 209.99617 * 11 9 7 14 14 H 1.48497 * 109.47076 * 329.99376 * 11 9 7 15 15 C 1.46923 * 118.74007 * 53.54101 * 6 5 4 16 16 C 1.53041 * 109.45858 * 240.02635 * 2 1 3 17 17 H 1.08996 * 109.49788 * 58.68342 * 16 2 1 18 18 N 1.46497 * 109.50059 * 298.58000 * 16 2 1 19 19 C 1.34778 * 120.00251 * 155.16232 * 18 16 2 20 20 O 1.21282 * 119.99624 * 4.96942 * 19 18 16 21 21 C 1.50699 * 120.00276 * 184.97396 * 19 18 16 22 22 C 1.53002 * 109.53965 * 291.81766 * 21 19 18 23 23 C 1.52994 * 117.50185 * 3.34197 * 22 21 19 24 24 C 1.52998 * 117.49940 * 294.71476 * 22 21 19 25 25 C 1.53172 * 109.54240 * 171.64392 * 21 19 18 26 26 C 1.53285 * 109.06307 * 297.02961 * 25 21 19 27 27 O 1.42910 * 109.45517 * 302.44568 * 26 25 21 28 28 C 1.42894 * 114.09774 * 61.16224 * 27 26 25 29 29 C 1.53089 * 109.41579 * 298.83560 * 28 27 26 30 30 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47055 * 299.97283 * 1 2 3 32 32 H 1.09003 * 109.46581 * 59.97304 * 1 2 3 33 33 H 1.08989 * 109.39431 * 61.36030 * 4 2 1 34 34 H 1.09003 * 109.61860 * 301.24791 * 4 2 1 35 35 H 1.09006 * 109.58581 * 185.71815 * 5 4 2 36 36 H 1.08994 * 109.58925 * 65.43400 * 5 4 2 37 37 H 0.97001 * 120.00694 * 180.02562 * 10 9 7 38 38 H 1.09005 * 109.59037 * 66.17888 * 15 6 5 39 39 H 1.09005 * 109.59247 * 186.60301 * 15 6 5 40 40 H 0.96997 * 119.99743 * 335.16324 * 18 16 2 41 41 H 1.08999 * 115.54415 * 149.04376 * 22 21 19 42 42 H 1.09006 * 117.50144 * 359.97438 * 23 22 21 43 43 H 1.08998 * 117.50733 * 145.02107 * 23 22 21 44 44 H 1.09004 * 117.49657 * 214.98019 * 24 22 21 45 45 H 1.08994 * 117.50068 * 0.02562 * 24 22 21 46 46 H 1.09002 * 109.52748 * 57.01863 * 25 21 19 47 47 H 1.09001 * 109.52110 * 177.20432 * 25 21 19 48 48 H 1.09005 * 109.45713 * 182.45364 * 26 25 21 49 49 H 1.08996 * 109.46941 * 62.44435 * 26 25 21 50 50 H 1.09007 * 109.48002 * 178.85796 * 28 27 26 51 51 H 1.09002 * 109.49138 * 58.82796 * 28 27 26 52 52 H 1.08999 * 109.52704 * 297.70647 * 29 28 27 53 53 H 1.09005 * 109.52362 * 177.51467 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0394 -0.7180 1.2523 5 6 3.5711 -0.6890 1.2646 6 7 4.0676 -1.2494 0.0004 7 6 4.9759 -2.2741 0.0005 8 1 4.9615 -3.0084 0.7924 9 6 5.9153 -2.3692 -1.0171 10 7 6.0847 -1.3661 -1.8521 11 14 6.9389 -3.9209 -1.2014 12 1 6.2366 -4.8736 -2.0982 13 1 8.2607 -3.5756 -1.7835 14 1 7.1331 -4.5469 0.1311 15 6 3.5714 -0.6891 -1.2639 16 6 2.0398 -0.7209 -1.2500 17 1 1.6575 -0.2208 -2.1398 18 7 1.5799 -2.1117 -1.2342 19 6 1.4544 -2.7932 -2.3902 20 8 1.8073 -2.2866 -3.4341 21 6 0.8757 -4.1847 -2.3857 22 6 1.8444 -5.1395 -1.6851 23 6 3.1128 -4.5383 -1.0766 24 6 3.2009 -5.3827 -2.3495 25 6 0.6499 -4.6504 -3.8273 26 6 -0.3813 -3.7330 -4.4941 27 8 -1.5937 -3.7507 -3.7377 28 6 -1.4510 -3.2813 -2.3956 29 6 -0.4648 -4.1796 -1.6445 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5134 0.8902 32 1 -0.3632 0.5143 -0.8898 33 1 1.6952 -1.7520 1.2419 34 1 1.6589 -0.2163 2.1421 35 1 3.9411 -1.2850 2.0988 36 1 3.9163 0.3395 1.3689 37 1 6.7408 -1.4325 -2.5635 38 1 3.9146 0.3404 -1.3670 39 1 3.9417 -1.2851 -2.0981 40 1 1.3656 -2.5421 -0.3918 41 1 1.3828 -5.9769 -1.1618 42 1 3.2575 -3.4624 -1.1757 43 1 3.4862 -4.9800 -0.1527 44 1 3.6321 -6.3801 -2.2629 45 1 3.4035 -4.8622 -3.2854 46 1 1.5903 -4.6045 -4.3765 47 1 0.2780 -5.6750 -3.8251 48 1 -0.5794 -4.0849 -5.5066 49 1 0.0084 -2.7158 -4.5324 50 1 -2.4196 -3.3077 -1.8963 51 1 -1.0752 -2.2581 -2.4062 52 1 -0.8592 -5.1947 -1.5982 53 1 -0.3209 -3.7973 -0.6339 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967433546.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:10 Heat of formation + Delta-G solvation = -56.172975 kcal Electronic energy + Delta-G solvation = -33794.056381 eV Core-core repulsion = 29859.114331 eV Total energy + Delta-G solvation = -3934.942050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.25767 -40.04000 -38.64653 -37.87042 -35.90185 -34.33429 -33.92641 -32.77776 -31.98503 -30.68093 -28.89012 -26.97615 -25.76673 -24.72928 -24.26801 -23.09066 -22.87908 -22.65390 -21.92682 -20.35995 -20.22389 -18.56805 -17.87758 -17.32957 -16.92732 -16.89562 -16.74825 -16.26488 -15.72498 -15.65116 -15.51514 -15.24295 -14.97506 -14.86033 -14.55332 -14.43256 -14.15139 -14.02134 -13.57183 -13.32311 -13.22453 -13.06220 -12.97243 -12.77708 -12.69374 -12.60169 -12.49514 -12.27969 -12.20996 -12.14254 -11.94268 -11.90861 -11.51575 -11.41804 -11.28880 -11.19954 -11.02541 -10.90122 -10.51308 -10.46590 -10.30995 -9.77139 -8.51712 -7.80255 -5.28885 1.40754 1.44803 1.48825 1.80020 2.37373 2.51443 2.84277 2.95102 3.38270 3.51402 3.72704 3.73284 3.77185 3.90278 4.02249 4.03223 4.05499 4.16460 4.18692 4.23385 4.30593 4.37096 4.57007 4.58680 4.66296 4.68658 4.71774 4.75924 4.78715 4.82524 4.84811 4.91700 4.96194 4.99430 5.07152 5.09000 5.14661 5.17727 5.20845 5.23593 5.27510 5.29332 5.32488 5.50136 5.56197 5.62975 5.69936 5.79025 5.82604 6.23189 6.46551 6.77137 7.21581 7.46991 7.92653 8.45776 9.24183 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.006465 C = 0.004809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.549370 B = 4329.929007 C = 5820.833013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.088 4.088 3 H 0.070 0.930 4 C -0.114 4.114 5 C 0.135 3.865 6 N -0.595 5.595 7 C -0.224 4.224 8 H 0.068 0.932 9 C -0.038 4.038 10 N -0.936 5.936 11 Si 0.932 3.068 12 H -0.280 1.280 13 H -0.310 1.310 14 H -0.264 1.264 15 C 0.175 3.825 16 C 0.137 3.863 17 H 0.055 0.945 18 N -0.684 5.684 19 C 0.522 3.478 20 O -0.588 6.588 21 C -0.046 4.046 22 C -0.124 4.124 23 C -0.197 4.197 24 C -0.191 4.191 25 C -0.123 4.123 26 C 0.057 3.943 27 O -0.392 6.392 28 C 0.054 3.946 29 C -0.133 4.133 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.008 0.992 37 H 0.241 0.759 38 H -0.012 1.012 39 H 0.048 0.952 40 H 0.405 0.595 41 H 0.143 0.857 42 H 0.121 0.879 43 H 0.092 0.908 44 H 0.101 0.899 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.096 0.904 48 H 0.104 0.896 49 H 0.041 0.959 50 H 0.125 0.875 51 H 0.033 0.967 52 H 0.105 0.895 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.636 -5.605 5.188 19.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.089 0.911 4 C -0.153 4.153 5 C 0.010 3.990 6 N -0.318 5.318 7 C -0.355 4.355 8 H 0.085 0.915 9 C -0.233 4.233 10 N -0.583 5.583 11 Si 0.762 3.238 12 H -0.207 1.207 13 H -0.237 1.237 14 H -0.189 1.189 15 C 0.048 3.952 16 C 0.030 3.970 17 H 0.073 0.927 18 N -0.335 5.335 19 C 0.310 3.690 20 O -0.468 6.468 21 C -0.049 4.049 22 C -0.142 4.142 23 C -0.233 4.233 24 C -0.228 4.228 25 C -0.161 4.161 26 C -0.020 4.020 27 O -0.311 6.311 28 C -0.022 4.022 29 C -0.170 4.170 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.083 0.917 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.026 0.974 37 H 0.050 0.950 38 H 0.006 0.994 39 H 0.067 0.933 40 H 0.243 0.757 41 H 0.161 0.839 42 H 0.139 0.861 43 H 0.111 0.889 44 H 0.120 0.880 45 H 0.077 0.923 46 H 0.075 0.925 47 H 0.115 0.885 48 H 0.122 0.878 49 H 0.059 0.941 50 H 0.142 0.858 51 H 0.051 0.949 52 H 0.124 0.876 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.457 -5.277 4.302 18.738 hybrid contribution 2.131 -0.362 -0.441 2.206 sum -15.326 -5.640 3.861 16.781 Atomic orbital electron populations 1.21766 0.93012 1.02347 1.02089 1.21265 0.96922 0.98938 0.93559 0.91143 1.21950 0.95630 1.00492 0.97253 1.21141 0.93669 0.95745 0.88425 1.44091 1.48265 1.39263 1.00219 1.19174 1.06035 1.01560 1.08684 0.91456 1.25616 0.98515 0.98664 1.00522 1.70124 1.36899 1.31339 1.19934 0.85782 0.77932 0.81664 0.78395 1.20662 1.23744 1.18875 1.20809 0.89951 0.94653 0.89767 1.21429 0.95354 0.82134 0.98099 0.92682 1.45793 1.66050 1.13027 1.08643 1.20764 0.77147 0.87775 0.83337 1.90642 1.51558 1.71146 1.33479 1.20496 0.96437 0.90270 0.97686 1.22342 0.87934 1.01141 1.02798 1.23785 1.00181 1.02846 0.96531 1.22814 1.01495 1.01516 0.97021 1.21990 0.99598 1.00733 0.93733 1.22703 0.84601 0.99109 0.95575 1.87862 1.32070 1.86450 1.24688 1.22769 1.01266 0.95718 0.82488 1.22276 0.91734 1.03512 0.99486 0.92020 0.90648 0.93461 0.91736 0.89294 0.92388 0.97386 0.95016 0.99355 0.93336 0.75666 0.83912 0.86060 0.88921 0.88020 0.92260 0.92452 0.88546 0.87784 0.94119 0.85764 0.94860 0.87648 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.05 71.98 0.65 -2.10 16 2 C -0.09 -2.42 2.47 -10.75 -0.03 -2.45 16 3 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.11 -3.01 5.21 30.69 0.16 -2.85 16 5 C 0.14 4.93 6.51 86.36 0.56 5.49 16 6 N -0.60 -27.20 2.79 -699.07 -1.95 -29.16 16 7 C -0.22 -11.34 7.06 84.03 0.59 -10.74 16 8 H 0.07 3.31 7.85 -2.91 -0.02 3.28 16 9 C -0.04 -2.09 5.02 84.86 0.43 -1.66 16 10 N -0.94 -56.83 11.16 21.65 0.24 -56.59 16 11 Si 0.93 45.26 29.57 68.60 2.03 47.29 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 13 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 14 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 15 C 0.18 8.41 4.46 86.37 0.38 8.79 16 16 C 0.14 4.97 2.20 45.07 0.10 5.07 16 17 H 0.06 2.19 7.66 -2.39 -0.02 2.17 16 18 N -0.68 -22.01 2.45 -442.16 -1.09 -23.09 16 19 C 0.52 18.36 3.49 87.66 0.31 18.66 16 20 O -0.59 -26.36 13.87 -3.04 -0.04 -26.40 16 21 C -0.05 -1.24 0.51 -52.81 -0.03 -1.26 16 22 C -0.12 -3.33 5.24 -10.80 -0.06 -3.39 16 23 C -0.20 -6.92 8.59 30.59 0.26 -6.66 16 24 C -0.19 -6.54 9.60 30.59 0.29 -6.24 16 25 C -0.12 -3.38 4.29 30.75 0.13 -3.25 16 26 C 0.06 1.58 6.56 72.08 0.47 2.05 16 27 O -0.39 -10.10 10.77 -148.98 -1.60 -11.71 16 28 C 0.05 1.13 6.61 72.01 0.48 1.61 16 29 C -0.13 -2.54 4.75 30.68 0.15 -2.39 16 30 H 0.06 1.14 7.54 -2.39 -0.02 1.12 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.60 6.41 -2.39 -0.02 1.59 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.06 2.05 7.93 -2.38 -0.02 2.03 16 36 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.24 14.66 8.31 -92.71 -0.77 13.89 16 38 H -0.01 -0.61 8.14 -2.38 -0.02 -0.63 16 39 H 0.05 2.82 6.15 -2.38 -0.01 2.80 16 40 H 0.41 11.28 5.40 -92.71 -0.50 10.78 16 41 H 0.14 2.84 8.07 -2.39 -0.02 2.82 16 42 H 0.12 5.09 3.00 -2.38 -0.01 5.08 16 43 H 0.09 3.12 8.14 -2.39 -0.02 3.11 16 44 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.06 2.40 7.33 -2.39 -0.02 2.39 16 46 H 0.06 1.88 6.90 -2.39 -0.02 1.86 16 47 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 49 H 0.04 1.39 6.12 -2.39 -0.01 1.37 16 50 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 51 H 0.03 0.82 7.38 -2.39 -0.02 0.80 16 52 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 53 H 0.09 1.50 7.17 -2.38 -0.02 1.49 16 Total: -1.00 -69.45 384.50 2.84 -66.61 By element: Atomic # 1 Polarization: 33.96 SS G_CDS: 0.40 Total: 34.36 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: 4.86 Total: -1.32 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -2.80 Total: -108.83 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.65 Total: -38.11 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -69.45 2.84 -66.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967433546.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.441 kcal (2) G-P(sol) polarization free energy of solvation -69.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds