Wall clock time and date at job start Tue Mar 31 2020 21:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.45916 * 2 1 4 4 C 1.53045 * 109.45989 * 240.02762 * 2 1 3 5 5 C 1.53191 * 109.30953 * 178.62870 * 4 2 1 6 6 N 1.46920 * 108.77920 * 54.63631 * 5 4 2 7 7 C 1.36935 * 120.63354 * 126.36541 * 6 5 4 8 8 H 1.08003 * 119.99887 * 326.63832 * 7 6 5 9 9 C 1.38812 * 120.00055 * 146.35481 * 7 6 5 10 10 N 1.31621 * 120.00228 * 339.64919 * 9 7 6 11 11 Si 1.86802 * 119.99972 * 159.64297 * 9 7 6 12 12 H 1.48502 * 109.47034 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.46752 * 120.00229 * 11 9 7 14 14 H 1.48491 * 109.47395 * 240.00579 * 11 9 7 15 15 C 1.46927 * 118.73813 * 306.64205 * 6 5 4 16 16 C 1.52763 * 109.00891 * 53.30670 * 15 6 5 17 17 H 1.08993 * 109.59120 * 185.53813 * 16 15 6 18 18 N 1.46502 * 109.35677 * 65.50066 * 16 15 6 19 19 C 1.34772 * 119.99725 * 85.16128 * 18 16 15 20 20 O 1.21280 * 120.00598 * 5.49060 * 19 18 16 21 21 C 1.50706 * 119.99879 * 185.49608 * 19 18 16 22 22 C 1.53001 * 109.54045 * 292.73512 * 21 19 18 23 23 C 1.53008 * 117.49830 * 1.77928 * 22 21 19 24 24 C 1.53004 * 59.99951 * 252.50858 * 23 22 21 25 25 C 1.53174 * 109.54594 * 172.47227 * 21 19 18 26 26 C 1.53100 * 109.16015 * 297.10924 * 25 21 19 27 27 O 1.42898 * 109.41422 * 302.39000 * 26 25 21 28 28 C 1.42901 * 114.09463 * 61.16196 * 27 26 25 29 29 C 1.53091 * 109.41631 * 298.83489 * 28 27 26 30 30 H 1.09003 * 109.47188 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47208 * 299.97046 * 1 2 3 32 32 H 1.08997 * 109.47525 * 59.97430 * 1 2 3 33 33 H 1.08999 * 109.49495 * 58.67594 * 4 2 1 34 34 H 1.09000 * 109.49783 * 298.57779 * 4 2 1 35 35 H 1.09001 * 109.58853 * 294.84113 * 5 4 2 36 36 H 1.09001 * 109.58525 * 174.42404 * 5 4 2 37 37 H 0.96998 * 120.00094 * 179.97438 * 10 9 7 38 38 H 1.08998 * 109.58878 * 173.14436 * 15 6 5 39 39 H 1.09010 * 109.58626 * 293.56758 * 15 6 5 40 40 H 0.96997 * 120.00112 * 265.16131 * 18 16 15 41 41 H 1.08998 * 115.54997 * 147.48705 * 22 21 19 42 42 H 1.08997 * 117.49734 * 0.02562 * 23 22 21 43 43 H 1.09001 * 117.49743 * 145.02622 * 23 22 21 44 44 H 1.09002 * 117.49812 * 252.51534 * 24 23 22 45 45 H 1.08998 * 117.49868 * 107.48552 * 24 23 22 46 46 H 1.08996 * 109.52658 * 57.01244 * 25 21 19 47 47 H 1.09001 * 109.52173 * 177.20786 * 25 21 19 48 48 H 1.08998 * 109.47757 * 182.40490 * 26 25 21 49 49 H 1.08995 * 109.48851 * 62.38289 * 26 25 21 50 50 H 1.09004 * 109.47780 * 178.85652 * 28 27 26 51 51 H 1.09003 * 109.49659 * 58.83067 * 28 27 26 52 52 H 1.09002 * 109.52454 * 297.71099 * 29 28 27 53 53 H 1.09002 * 109.52374 * 177.51517 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6890 -1.2640 6 7 4.0675 -1.2493 0.0003 7 6 4.9752 -2.2746 0.0005 8 1 4.9480 -3.0200 -0.7806 9 6 5.9340 -2.3527 1.0012 10 7 6.2439 -1.2816 1.7007 11 14 6.7843 -3.9778 1.3553 12 1 6.2614 -5.0206 0.4365 13 1 8.2472 -3.8260 1.1499 14 1 6.5208 -4.3785 2.7607 15 6 3.5668 -0.6927 1.2645 16 6 2.0395 -0.7208 1.2502 17 1 1.6564 -0.2210 2.1398 18 7 1.5795 -2.1116 1.2343 19 6 1.4507 -2.7919 2.3906 20 8 1.6189 -2.2253 3.4496 21 6 1.0978 -4.2569 2.3676 22 6 -0.3284 -4.4315 1.8418 23 6 -1.0837 -3.1708 1.4161 24 6 -1.4709 -3.8955 2.7068 25 6 1.1971 -4.8302 3.7845 26 6 2.6448 -4.7207 4.2706 27 8 3.5045 -5.4117 3.3620 28 6 3.4889 -4.8889 2.0321 29 6 2.0752 -5.0053 1.4561 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8903 32 1 -0.3634 0.5142 -0.8897 33 1 1.6573 -0.2208 -2.1398 34 1 1.6976 -1.7557 -1.2383 35 1 3.9144 0.3404 -1.3672 36 1 3.9416 -1.2850 -2.0981 37 1 6.9136 -1.3363 2.4002 38 1 3.9341 -1.2911 2.0982 39 1 3.9096 0.3365 1.3718 40 1 1.3677 -2.5429 0.3917 41 1 -0.5119 -5.3441 1.2747 42 1 -0.5644 -2.2171 1.5103 43 1 -1.7643 -3.2539 0.5688 44 1 -2.4062 -4.4553 2.7085 45 1 -1.2065 -3.4185 3.6505 46 1 0.5452 -4.2668 4.4521 47 1 0.8941 -5.8772 3.7759 48 1 2.7301 -5.1661 5.2618 49 1 2.9341 -3.6709 4.3177 50 1 4.1824 -5.4556 1.4107 51 1 3.7893 -3.8413 2.0496 52 1 1.7898 -6.0558 1.4005 53 1 2.0512 -4.5669 0.4584 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967433554.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:14 Heat of formation + Delta-G solvation = -57.151344 kcal Electronic energy + Delta-G solvation = -33954.179851 eV Core-core repulsion = 30019.195376 eV Total energy + Delta-G solvation = -3934.984475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.29496 -40.07506 -38.75801 -37.86844 -35.89784 -34.42114 -33.92354 -32.84549 -32.03745 -30.77856 -28.93170 -27.03469 -25.82939 -24.75985 -24.31276 -23.16630 -22.88723 -22.68949 -22.01457 -20.40116 -20.25486 -18.58342 -17.96783 -17.44842 -17.04466 -16.88582 -16.51615 -16.38088 -15.90724 -15.75384 -15.69385 -15.18406 -14.95178 -14.90855 -14.61782 -14.44415 -14.25852 -14.03683 -13.61762 -13.50049 -13.34110 -13.11678 -12.92786 -12.85102 -12.78465 -12.59121 -12.46618 -12.31016 -12.22656 -12.13490 -12.04466 -11.85286 -11.53437 -11.48721 -11.34837 -11.24131 -11.04688 -10.89363 -10.59382 -10.52357 -10.31372 -9.81159 -8.58784 -7.89149 -5.35389 1.34466 1.39976 1.47645 1.75339 2.36410 2.44791 2.82489 2.90002 3.27378 3.47577 3.66872 3.69468 3.72249 3.85974 3.99549 4.01299 4.01475 4.11286 4.14789 4.21897 4.30206 4.36110 4.53481 4.58109 4.66256 4.67161 4.71411 4.73396 4.74644 4.80744 4.84402 4.90010 4.90618 4.97831 5.02684 5.05692 5.06894 5.11681 5.17697 5.19147 5.26242 5.28567 5.31275 5.32366 5.47974 5.51677 5.60055 5.68005 5.77580 6.19106 6.39980 6.74223 7.14757 7.42818 7.86418 8.42010 9.15298 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009791 B = 0.007852 C = 0.005056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.982684 B = 3565.091457 C = 5536.599970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.071 0.929 4 C -0.114 4.114 5 C 0.136 3.864 6 N -0.593 5.593 7 C -0.238 4.238 8 H 0.069 0.931 9 C -0.029 4.029 10 N -0.928 5.928 11 Si 0.920 3.080 12 H -0.249 1.249 13 H -0.302 1.302 14 H -0.300 1.300 15 C 0.180 3.820 16 C 0.137 3.863 17 H 0.060 0.940 18 N -0.684 5.684 19 C 0.524 3.476 20 O -0.588 6.588 21 C -0.045 4.045 22 C -0.139 4.139 23 C -0.193 4.193 24 C -0.171 4.171 25 C -0.115 4.115 26 C 0.047 3.953 27 O -0.402 6.402 28 C 0.049 3.951 29 C -0.125 4.125 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.008 0.992 36 H 0.058 0.942 37 H 0.243 0.757 38 H 0.028 0.972 39 H -0.007 1.007 40 H 0.406 0.594 41 H 0.141 0.859 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.075 0.925 46 H 0.079 0.921 47 H 0.100 0.900 48 H 0.105 0.895 49 H 0.029 0.971 50 H 0.085 0.915 51 H 0.035 0.965 52 H 0.106 0.894 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.974 -5.838 -4.600 20.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.106 4.106 3 H 0.090 0.910 4 C -0.153 4.153 5 C 0.011 3.989 6 N -0.316 5.316 7 C -0.369 4.369 8 H 0.086 0.914 9 C -0.226 4.226 10 N -0.574 5.574 11 Si 0.750 3.250 12 H -0.172 1.172 13 H -0.230 1.230 14 H -0.228 1.228 15 C 0.053 3.947 16 C 0.030 3.970 17 H 0.078 0.922 18 N -0.334 5.334 19 C 0.312 3.688 20 O -0.469 6.469 21 C -0.048 4.048 22 C -0.157 4.157 23 C -0.230 4.230 24 C -0.208 4.208 25 C -0.153 4.153 26 C -0.030 4.030 27 O -0.322 6.322 28 C -0.028 4.028 29 C -0.163 4.163 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.026 0.974 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.011 0.989 40 H 0.244 0.756 41 H 0.159 0.841 42 H 0.109 0.891 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.118 0.882 48 H 0.123 0.877 49 H 0.048 0.952 50 H 0.103 0.897 51 H 0.053 0.947 52 H 0.125 0.875 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -18.603 -5.564 -3.736 19.773 hybrid contribution 1.571 -0.101 0.556 1.670 sum -17.032 -5.664 -3.181 18.228 Atomic orbital electron populations 1.21846 0.92985 1.02628 1.02097 1.21246 0.96964 0.98936 0.93428 0.91047 1.21946 0.95511 1.00513 0.97339 1.21152 0.93672 0.95739 0.88345 1.44047 1.47777 1.39624 1.00183 1.19240 1.05968 1.01208 1.10449 0.91391 1.25563 0.97448 0.97895 1.01712 1.70179 1.34005 1.27954 1.25254 0.86030 0.77945 0.83034 0.78031 1.17211 1.22986 1.22766 1.20619 0.90528 0.94554 0.88972 1.21339 0.94704 0.82391 0.98527 0.92202 1.45795 1.65890 1.13037 1.08708 1.20734 0.75243 0.89337 0.83530 1.90621 1.53013 1.71248 1.32033 1.20471 0.96347 0.90376 0.97636 1.22227 0.88481 1.00158 1.04868 1.23539 1.03798 0.96010 0.99680 1.22986 0.99220 1.03824 0.94722 1.21944 0.96207 1.02514 0.94596 1.22798 0.90358 0.96343 0.93459 1.87826 1.66139 1.57782 1.20418 1.22704 0.98178 0.98726 0.83154 1.22166 0.92633 1.02590 0.98898 0.91639 0.93438 0.90650 0.89242 0.91684 0.97373 0.92329 0.94812 0.95374 0.98912 0.75646 0.84124 0.89102 0.86112 0.86243 0.90668 0.90292 0.88155 0.87694 0.95239 0.89674 0.94661 0.87537 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.96 71.98 0.65 -2.20 16 2 C -0.09 -2.39 2.48 -10.77 -0.03 -2.42 16 3 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.11 -3.02 5.20 30.67 0.16 -2.86 16 5 C 0.14 5.01 6.52 86.36 0.56 5.57 16 6 N -0.59 -27.47 2.88 -699.92 -2.01 -29.48 16 7 C -0.24 -12.31 9.22 84.03 0.77 -11.54 16 8 H 0.07 3.39 7.91 -2.91 -0.02 3.37 16 9 C -0.03 -1.66 4.45 84.86 0.38 -1.28 16 10 N -0.93 -57.10 11.88 21.65 0.26 -56.84 16 11 Si 0.92 46.16 26.68 68.60 1.83 47.99 16 12 H -0.25 -11.23 7.01 99.48 0.70 -10.53 16 13 H -0.30 -15.40 7.11 99.48 0.71 -14.69 16 14 H -0.30 -16.03 7.11 99.48 0.71 -15.32 16 15 C 0.18 8.66 4.88 86.22 0.42 9.08 16 16 C 0.14 4.97 2.28 44.93 0.10 5.07 16 17 H 0.06 2.37 7.50 -2.39 -0.02 2.35 16 18 N -0.68 -21.90 2.50 -442.85 -1.11 -23.00 16 19 C 0.52 18.22 3.51 87.66 0.31 18.53 16 20 O -0.59 -25.57 13.78 -3.03 -0.04 -25.62 16 21 C -0.05 -1.23 0.51 -52.81 -0.03 -1.26 16 22 C -0.14 -2.66 5.27 -10.79 -0.06 -2.71 16 23 C -0.19 -3.56 8.85 30.60 0.27 -3.29 16 24 C -0.17 -3.12 9.62 30.60 0.29 -2.83 16 25 C -0.11 -3.21 4.26 30.69 0.13 -3.08 16 26 C 0.05 1.67 6.56 72.02 0.47 2.14 16 27 O -0.40 -16.00 10.77 -148.98 -1.60 -17.60 16 28 C 0.05 1.89 5.43 72.01 0.39 2.28 16 29 C -0.13 -3.50 4.75 30.68 0.15 -3.35 16 30 H 0.06 1.24 5.65 -2.39 -0.01 1.22 16 31 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.06 1.62 6.40 -2.39 -0.02 1.60 16 35 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 36 H 0.06 2.10 7.93 -2.39 -0.02 2.08 16 37 H 0.24 14.88 8.31 -92.71 -0.77 14.11 16 38 H 0.03 1.62 6.63 -2.39 -0.02 1.60 16 39 H -0.01 -0.37 8.14 -2.38 -0.02 -0.39 16 40 H 0.41 11.28 5.44 -92.71 -0.50 10.77 16 41 H 0.14 1.98 8.06 -2.39 -0.02 1.96 16 42 H 0.09 2.10 3.89 -2.39 -0.01 2.09 16 43 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.07 1.73 7.24 -2.39 -0.02 1.71 16 46 H 0.08 2.21 6.84 -2.39 -0.02 2.19 16 47 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 49 H 0.03 1.30 6.08 -2.39 -0.01 1.29 16 50 H 0.09 3.30 6.99 -2.39 -0.02 3.28 16 51 H 0.04 1.68 6.09 -2.39 -0.01 1.66 16 52 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 53 H 0.09 2.33 7.23 -2.39 -0.02 2.31 16 Total: -1.00 -71.33 380.19 2.66 -68.67 By element: Atomic # 1 Polarization: 29.65 SS G_CDS: 0.39 Total: 30.04 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 4.94 Total: 5.84 kcal Atomic # 7 Polarization: -106.46 SS G_CDS: -2.86 Total: -109.33 kcal Atomic # 8 Polarization: -41.57 SS G_CDS: -1.65 Total: -43.22 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.83 Total: 47.99 kcal Total: -71.33 2.66 -68.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967433554.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.520 kcal (2) G-P(sol) polarization free energy of solvation -71.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds