Wall clock time and date at job start Tue Mar 31 2020 21:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.45164 * 2 1 4 4 C 1.53037 * 109.48940 * 240.05632 * 2 1 3 5 5 C 1.53189 * 109.34378 * 178.64815 * 4 2 1 6 6 N 1.46930 * 108.77648 * 54.61394 * 5 4 2 7 7 C 1.36936 * 120.62806 * 126.37381 * 6 5 4 8 8 H 1.07998 * 119.99976 * 331.59620 * 7 6 5 9 9 C 1.38815 * 119.99677 * 151.60111 * 7 6 5 10 10 N 1.31621 * 120.00130 * 343.09587 * 9 7 6 11 11 Si 1.86803 * 119.99699 * 163.09946 * 9 7 6 12 12 H 1.48498 * 109.47238 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47070 * 119.99995 * 11 9 7 14 14 H 1.48509 * 109.46935 * 239.99764 * 11 9 7 15 15 C 1.46922 * 118.73719 * 306.39539 * 6 5 4 16 16 C 1.53041 * 109.46025 * 119.96785 * 2 1 3 17 17 H 1.09000 * 109.49790 * 61.40625 * 16 2 1 18 18 N 1.46497 * 109.49613 * 301.33796 * 16 2 1 19 19 C 1.34777 * 120.00049 * 155.06623 * 18 16 2 20 20 O 1.21280 * 119.99914 * 5.13113 * 19 18 16 21 21 C 1.50701 * 120.00142 * 185.13675 * 19 18 16 22 22 C 1.52992 * 109.54200 * 290.77731 * 21 19 18 23 23 C 1.53004 * 117.49721 * 63.92259 * 22 21 19 24 24 C 1.52998 * 117.49979 * 355.29977 * 22 21 19 25 25 C 1.53179 * 109.54304 * 50.95663 * 21 19 18 26 26 C 1.53107 * 109.15617 * 63.06399 * 25 21 19 27 27 O 1.42896 * 109.49014 * 57.47598 * 26 25 21 28 28 C 1.42906 * 114.09732 * 298.88697 * 27 26 25 29 29 C 1.53095 * 109.41396 * 61.15706 * 28 27 26 30 30 H 1.08994 * 109.47292 * 300.03619 * 1 2 3 31 31 H 1.09001 * 109.46997 * 60.03209 * 1 2 3 32 32 H 1.08998 * 109.46929 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.50227 * 58.67650 * 4 2 1 34 34 H 1.09007 * 109.49807 * 298.61430 * 4 2 1 35 35 H 1.09001 * 109.58511 * 294.82751 * 5 4 2 36 36 H 1.09003 * 109.70819 * 174.47390 * 5 4 2 37 37 H 0.97005 * 119.99783 * 179.97438 * 10 9 7 38 38 H 1.09002 * 109.59226 * 293.82037 * 15 6 5 39 39 H 1.09003 * 109.58863 * 173.39212 * 15 6 5 40 40 H 0.97000 * 120.00076 * 335.06621 * 18 16 2 41 41 H 1.09003 * 115.56353 * 209.60779 * 22 21 19 42 42 H 1.09002 * 117.49633 * 145.02465 * 23 22 21 43 43 H 1.08994 * 117.49846 * 359.97438 * 23 22 21 44 44 H 1.08999 * 117.49840 * 359.97438 * 24 22 21 45 45 H 1.09007 * 117.52035 * 214.97079 * 24 22 21 46 46 H 1.09000 * 109.52086 * 182.88012 * 25 21 19 47 47 H 1.08994 * 109.52049 * 303.06794 * 25 21 19 48 48 H 1.08998 * 109.40665 * 297.49310 * 26 25 21 49 49 H 1.09000 * 109.48635 * 177.51023 * 26 25 21 50 50 H 1.08999 * 109.48192 * 301.17897 * 28 27 26 51 51 H 1.09002 * 109.49284 * 181.14453 * 28 27 26 52 52 H 1.09003 * 109.52467 * 182.48860 * 29 28 27 53 53 H 1.08999 * 109.52508 * 62.29791 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0405 -0.7201 -1.2501 5 6 3.5720 -0.6887 -1.2639 6 7 4.0680 -1.2495 0.0004 7 6 4.9754 -2.2750 0.0004 8 1 5.0001 -2.9741 -0.8224 9 6 5.8634 -2.4160 1.0580 10 7 6.0710 -1.4104 1.8815 11 14 6.7638 -4.0328 1.3123 12 1 6.3573 -4.9968 0.2584 13 1 8.2286 -3.8014 1.2338 14 1 6.4208 -4.5857 2.6472 15 6 3.5713 -0.6893 1.2646 16 6 2.0398 -0.7208 1.2501 17 1 1.6973 -1.7555 1.2385 18 7 1.5255 -0.0488 2.4459 19 6 1.3983 -0.7320 3.6007 20 8 1.7956 -1.8754 3.6757 21 6 0.7622 -0.0752 4.7986 22 6 1.6858 1.0221 5.3313 23 6 1.9661 2.2155 4.4158 24 6 3.0572 1.1736 4.6702 25 6 -0.5817 0.5382 4.3934 26 6 -1.5263 -0.5775 3.9382 27 8 -1.6779 -1.5326 4.9902 28 6 -0.4603 -2.1731 5.3768 29 6 0.5264 -1.1219 5.8919 30 1 -0.3633 0.5144 0.8896 31 1 -0.3633 0.5133 -0.8903 32 1 -0.3633 -1.0277 0.0005 33 1 1.6584 -0.2198 -2.1398 34 1 1.6980 -1.7549 -1.2393 35 1 3.9155 0.3407 -1.3667 36 1 3.9444 -1.2831 -2.0982 37 1 6.6913 -1.5091 2.6208 38 1 3.9146 0.3401 1.3681 39 1 3.9411 -1.2856 2.0988 40 1 1.2765 0.8879 2.4066 41 1 1.6193 1.2140 6.4022 42 1 2.0841 3.1925 4.8845 43 1 1.4928 2.2187 3.4339 44 1 3.3017 0.4912 3.8561 45 1 3.8933 1.4652 5.3059 46 1 -1.0175 1.0570 5.2472 47 1 -0.4286 1.2435 3.5767 48 1 -1.1097 -1.0685 3.0588 49 1 -2.4988 -0.1521 3.6905 50 1 -0.0297 -2.6849 4.5161 51 1 -0.6647 -2.8971 6.1655 52 1 1.4712 -1.6026 6.1457 53 1 0.1136 -0.6376 6.7768 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967433556.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:19 Heat of formation + Delta-G solvation = -60.510394 kcal Electronic energy + Delta-G solvation = -32852.417756 eV Core-core repulsion = 28917.287622 eV Total energy + Delta-G solvation = -3935.130135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.35673 -39.98000 -38.79130 -38.04312 -36.11816 -34.66347 -33.99111 -32.84414 -32.07491 -30.46896 -28.99701 -27.02763 -25.93938 -24.78719 -24.52350 -23.13052 -22.81342 -22.32639 -22.05142 -21.26480 -20.05305 -18.78446 -17.97568 -17.41710 -17.03301 -16.97897 -16.78669 -16.37585 -15.84478 -15.68931 -15.50527 -15.35565 -15.25056 -15.00941 -14.50129 -14.45790 -14.26133 -14.09201 -13.61214 -13.37283 -13.28896 -13.26039 -13.06493 -12.83528 -12.79619 -12.60587 -12.38394 -12.32602 -12.25579 -12.19079 -12.04274 -11.93050 -11.64942 -11.53762 -11.49373 -11.29237 -11.20558 -10.96179 -10.59300 -10.56677 -10.37813 -10.00042 -8.70270 -7.91828 -5.37795 1.35968 1.40593 1.48856 1.68924 2.15722 2.45600 2.79563 2.91785 3.24178 3.38331 3.57246 3.68488 3.75024 3.78881 3.93762 3.97632 3.98941 4.03932 4.11565 4.15507 4.27912 4.32924 4.45528 4.54102 4.57195 4.62161 4.64093 4.65385 4.71546 4.77799 4.79846 4.88770 4.90708 4.96370 5.01677 5.03913 5.05774 5.09914 5.14499 5.16133 5.18984 5.21904 5.22394 5.31176 5.43998 5.49554 5.51712 5.59522 5.79242 6.19607 6.33918 6.62541 7.09793 7.35034 7.83021 8.31868 9.12268 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011461 B = 0.004758 C = 0.004197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.583961 B = 5882.979246 C = 6669.443266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 H 0.078 0.922 4 C -0.115 4.115 5 C 0.135 3.865 6 N -0.609 5.609 7 C -0.264 4.264 8 H 0.065 0.935 9 C -0.047 4.047 10 N -0.925 5.925 11 Si 0.957 3.043 12 H -0.264 1.264 13 H -0.284 1.284 14 H -0.300 1.300 15 C 0.185 3.815 16 C 0.142 3.858 17 H 0.043 0.957 18 N -0.705 5.705 19 C 0.519 3.481 20 O -0.581 6.581 21 C -0.045 4.045 22 C -0.134 4.134 23 C -0.149 4.149 24 C -0.215 4.215 25 C -0.132 4.132 26 C 0.051 3.949 27 O -0.391 6.391 28 C 0.055 3.945 29 C -0.125 4.125 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.021 0.979 36 H 0.054 0.946 37 H 0.246 0.754 38 H -0.004 1.004 39 H 0.042 0.958 40 H 0.405 0.595 41 H 0.137 0.863 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.067 0.933 45 H 0.094 0.906 46 H 0.109 0.891 47 H 0.095 0.905 48 H 0.028 0.972 49 H 0.125 0.875 50 H 0.034 0.966 51 H 0.106 0.894 52 H 0.060 0.940 53 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.876 10.869 4.643 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 H 0.096 0.904 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.333 5.333 7 C -0.395 4.395 8 H 0.083 0.917 9 C -0.243 4.243 10 N -0.571 5.571 11 Si 0.786 3.214 12 H -0.188 1.188 13 H -0.211 1.211 14 H -0.227 1.227 15 C 0.058 3.942 16 C 0.035 3.965 17 H 0.062 0.938 18 N -0.358 5.358 19 C 0.307 3.693 20 O -0.461 6.461 21 C -0.048 4.048 22 C -0.152 4.152 23 C -0.185 4.185 24 C -0.252 4.252 25 C -0.169 4.169 26 C -0.026 4.026 27 O -0.310 6.310 28 C -0.022 4.022 29 C -0.162 4.162 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.038 0.962 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.014 0.986 39 H 0.061 0.939 40 H 0.244 0.756 41 H 0.155 0.845 42 H 0.144 0.856 43 H 0.115 0.885 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.127 0.873 47 H 0.114 0.886 48 H 0.046 0.954 49 H 0.143 0.857 50 H 0.052 0.948 51 H 0.124 0.876 52 H 0.079 0.921 53 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -17.675 10.011 4.845 20.883 hybrid contribution 1.801 -0.919 0.108 2.025 sum -15.874 9.093 4.953 18.952 Atomic orbital electron populations 1.21776 0.92801 1.01647 1.02974 1.21276 0.97098 0.99262 0.92902 0.90411 1.21957 0.95636 1.00151 0.97722 1.21173 0.93649 0.96102 0.88052 1.44245 1.48215 1.39739 1.01102 1.19486 1.09433 1.03740 1.06793 0.91684 1.25748 0.98516 1.00083 0.99970 1.70172 1.37968 1.30462 1.18501 0.85356 0.78096 0.80661 0.77311 1.18829 1.21098 1.22717 1.20726 0.89781 0.94630 0.89039 1.21451 0.94844 0.95471 0.84730 0.93833 1.46116 1.65540 1.14466 1.09687 1.21008 0.77604 0.85911 0.84758 1.90706 1.50487 1.20842 1.84039 1.20525 0.96370 0.95562 0.92336 1.22280 0.95809 0.97059 1.00023 1.23125 1.00359 0.94538 1.00506 1.23173 0.93489 1.04674 1.03903 1.22284 0.91964 0.98313 1.04380 1.22799 1.01655 0.89285 0.88820 1.87868 1.31242 1.56756 1.55123 1.22669 0.84840 0.94834 0.99863 1.21997 0.99964 0.96394 0.97887 0.91618 0.90227 0.93957 0.88547 0.93335 0.96150 0.92777 0.94518 0.98647 0.93908 0.75603 0.84491 0.85565 0.88453 0.91494 0.88751 0.87262 0.88632 0.95359 0.85730 0.94788 0.87573 0.92107 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.02 71.98 0.65 -2.25 16 2 C -0.09 -2.53 2.27 -10.77 -0.02 -2.56 16 3 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 4 C -0.12 -3.64 5.36 30.67 0.16 -3.48 16 5 C 0.14 5.56 6.52 86.36 0.56 6.12 16 6 N -0.61 -31.83 2.99 -699.09 -2.09 -33.92 16 7 C -0.26 -15.39 9.58 84.03 0.80 -14.59 16 8 H 0.07 3.70 7.88 -2.91 -0.02 3.68 16 9 C -0.05 -2.82 4.91 84.86 0.42 -2.40 16 10 N -0.93 -57.98 11.21 21.65 0.24 -57.74 16 11 Si 0.96 48.46 29.59 68.60 2.03 50.49 16 12 H -0.26 -12.64 7.11 99.48 0.71 -11.94 16 13 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 14 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 15 C 0.19 9.35 4.70 86.36 0.41 9.75 16 16 C 0.14 5.48 2.02 45.07 0.09 5.57 16 17 H 0.04 2.01 7.66 -2.39 -0.02 2.00 16 18 N -0.70 -22.07 2.99 -442.17 -1.32 -23.40 16 19 C 0.52 17.86 3.25 87.66 0.29 18.15 16 20 O -0.58 -26.84 13.96 -3.03 -0.04 -26.88 16 21 C -0.04 -1.09 0.53 -52.81 -0.03 -1.12 16 22 C -0.13 -2.88 5.22 -10.80 -0.06 -2.94 16 23 C -0.15 -2.80 9.29 30.60 0.28 -2.51 16 24 C -0.22 -6.27 9.55 30.59 0.29 -5.97 16 25 C -0.13 -2.26 4.53 30.69 0.14 -2.12 16 26 C 0.05 1.04 6.61 72.02 0.48 1.52 16 27 O -0.39 -9.91 10.77 -148.98 -1.60 -11.51 16 28 C 0.05 1.49 6.56 72.01 0.47 1.96 16 29 C -0.12 -3.14 4.52 30.69 0.14 -3.00 16 30 H 0.06 1.19 7.36 -2.39 -0.02 1.17 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 35 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 37 H 0.25 15.05 8.31 -92.70 -0.77 14.28 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.04 2.61 6.08 -2.39 -0.01 2.60 16 40 H 0.40 9.82 4.67 -92.71 -0.43 9.39 16 41 H 0.14 2.35 8.08 -2.39 -0.02 2.33 16 42 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.10 1.66 5.11 -2.39 -0.01 1.64 16 44 H 0.07 2.64 5.73 -2.39 -0.01 2.63 16 45 H 0.09 2.69 8.14 -2.38 -0.02 2.67 16 46 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.10 1.27 6.25 -2.39 -0.01 1.26 16 48 H 0.03 0.71 7.38 -2.39 -0.02 0.69 16 49 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 50 H 0.03 1.18 6.16 -2.39 -0.01 1.17 16 51 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 52 H 0.06 1.82 7.90 -2.39 -0.02 1.80 16 53 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -77.94 389.66 2.75 -75.19 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.46 Total: 27.63 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: 5.08 Total: 0.15 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -3.17 Total: -115.06 kcal Atomic # 8 Polarization: -36.75 SS G_CDS: -1.65 Total: -38.39 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.03 Total: 50.49 kcal Total: -77.94 2.75 -75.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967433556.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.680 kcal (2) G-P(sol) polarization free energy of solvation -77.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds