Wall clock time and date at job start Tue Mar 31 2020 21:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08993 * 109.44545 * 2 1 4 4 C 1.53041 * 109.45756 * 119.96721 * 2 1 3 5 5 C 1.53192 * 109.31367 * 181.38445 * 4 2 1 6 6 N 1.46931 * 108.77392 * 305.36937 * 5 4 2 7 7 C 1.36935 * 120.62622 * 233.62854 * 6 5 4 8 8 H 1.07998 * 120.00349 * 31.60244 * 7 6 5 9 9 C 1.38807 * 120.00031 * 211.60046 * 7 6 5 10 10 N 1.31621 * 119.99872 * 10.91448 * 9 7 6 11 11 Si 1.86800 * 120.00150 * 190.91375 * 9 7 6 12 12 H 1.48499 * 109.47302 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47088 * 120.00542 * 11 9 7 14 14 H 1.48505 * 109.47031 * 239.99875 * 11 9 7 15 15 C 1.46926 * 118.74161 * 53.60044 * 6 5 4 16 16 C 1.53035 * 109.45787 * 240.03289 * 2 1 3 17 17 H 1.09002 * 109.52638 * 298.58609 * 16 2 1 18 18 N 1.46499 * 109.49662 * 58.66742 * 16 2 1 19 19 C 1.34783 * 119.99931 * 204.83852 * 18 16 2 20 20 O 1.21285 * 119.99678 * 4.78584 * 19 18 16 21 21 C 1.50697 * 119.99936 * 184.78907 * 19 18 16 22 22 C 1.53002 * 109.54301 * 68.14417 * 21 19 18 23 23 C 1.53002 * 117.50137 * 58.12383 * 22 21 19 24 24 C 1.52996 * 117.49977 * 349.50063 * 22 21 19 25 25 C 1.53178 * 109.54180 * 188.31885 * 21 19 18 26 26 C 1.53108 * 109.15712 * 63.06394 * 25 21 19 27 27 O 1.42902 * 109.48264 * 57.47672 * 26 25 21 28 28 C 1.42901 * 114.09917 * 298.88667 * 27 26 25 29 29 C 1.53088 * 109.41637 * 61.15886 * 28 27 26 30 30 H 1.08997 * 109.47197 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46732 * 299.96710 * 1 2 3 32 32 H 1.08995 * 109.46836 * 59.96041 * 1 2 3 33 33 H 1.08995 * 109.49709 * 61.43390 * 4 2 1 34 34 H 1.09001 * 109.52060 * 301.35081 * 4 2 1 35 35 H 1.08987 * 109.59089 * 185.57658 * 5 4 2 36 36 H 1.09004 * 109.58291 * 65.14609 * 5 4 2 37 37 H 0.97001 * 120.00215 * 179.97438 * 10 9 7 38 38 H 1.08997 * 109.58526 * 186.60871 * 15 6 5 39 39 H 1.09006 * 109.69780 * 66.25338 * 15 6 5 40 40 H 0.96993 * 120.00621 * 24.83492 * 18 16 2 41 41 H 1.08997 * 115.55998 * 203.81160 * 22 21 19 42 42 H 1.08996 * 117.49700 * 145.02109 * 23 22 21 43 43 H 1.08998 * 117.49502 * 0.02562 * 23 22 21 44 44 H 1.09003 * 117.49820 * 0.02562 * 24 22 21 45 45 H 1.09001 * 117.50119 * 214.98073 * 24 22 21 46 46 H 1.09004 * 109.52148 * 182.88292 * 25 21 19 47 47 H 1.09000 * 109.52805 * 303.06888 * 25 21 19 48 48 H 1.08997 * 109.40355 * 297.49530 * 26 25 21 49 49 H 1.09001 * 109.48964 * 177.50911 * 26 25 21 50 50 H 1.09007 * 109.47779 * 301.17758 * 28 27 26 51 51 H 1.08993 * 109.48536 * 181.14654 * 28 27 26 52 52 H 1.08996 * 109.52343 * 182.48641 * 29 28 27 53 53 H 1.08996 * 109.52099 * 62.29788 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 1.2501 5 6 3.5714 -0.6887 1.2643 6 7 4.0679 -1.2489 0.0000 7 6 4.9757 -2.2740 0.0000 8 1 4.9667 -3.0034 0.7965 9 6 5.9076 -2.3759 -1.0237 10 7 6.0641 -1.3821 -1.8725 11 14 6.9398 -3.9232 -1.1967 12 1 6.5750 -4.8840 -0.1248 13 1 6.6869 -4.5411 -2.5231 14 1 8.3785 -3.5742 -1.0794 15 6 3.5714 -0.6886 -1.2643 16 6 2.0399 -0.7208 -1.2500 17 1 1.6978 -1.7556 -1.2389 18 7 1.5256 -0.0486 -2.4459 19 6 1.4002 -0.7313 -3.6012 20 8 1.6301 -1.9218 -3.6301 21 6 0.9743 -0.0154 -4.8570 22 6 2.0813 0.9434 -5.3000 23 6 3.4618 0.3468 -5.5814 24 6 3.2344 1.1899 -4.3251 25 6 0.7090 -1.0389 -5.9654 26 6 -0.4540 -1.9425 -5.5469 27 8 -1.6075 -1.1422 -5.2805 28 6 -1.4319 -0.2004 -4.2202 29 6 -0.3098 0.7746 -4.5861 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5133 0.8903 32 1 -0.3633 0.5144 -0.8896 33 1 1.6978 -1.7556 1.2383 34 1 1.6572 -0.2212 2.1401 35 1 3.9417 -1.2845 2.0984 36 1 3.9143 0.3409 1.3674 37 1 6.7155 -1.4531 -2.5876 38 1 3.9416 -1.2846 -2.0984 39 1 3.9143 0.3407 -1.3698 40 1 1.2754 0.8876 -2.4063 41 1 1.7587 1.7799 -5.9198 42 1 4.0474 0.7910 -6.3863 43 1 3.5813 -0.7288 -5.4513 44 1 3.2045 0.6687 -3.3682 45 1 3.6704 2.1886 -4.3034 46 1 0.4507 -0.5183 -6.8876 47 1 1.6022 -1.6429 -6.1250 48 1 -0.1787 -2.4942 -4.6481 49 1 -0.6764 -2.6446 -6.3505 50 1 -1.1694 -0.7293 -3.3039 51 1 -2.3587 0.3527 -4.0680 52 1 -0.1445 1.4663 -3.7602 53 1 -0.5893 1.3328 -5.4796 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967433557.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:23 Heat of formation + Delta-G solvation = -60.327723 kcal Electronic energy + Delta-G solvation = -32839.356675 eV Core-core repulsion = 28904.234461 eV Total energy + Delta-G solvation = -3935.122213 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.32334 -39.98541 -38.77408 -37.92553 -36.11798 -34.72149 -34.03782 -32.83733 -32.03874 -30.44954 -28.98426 -26.97060 -25.92260 -24.77359 -24.48789 -23.08030 -22.77371 -22.43814 -21.99781 -21.19903 -19.99938 -18.79123 -17.90237 -17.41198 -17.20226 -16.95849 -16.81600 -16.33826 -15.76174 -15.67314 -15.44066 -15.31008 -15.18278 -14.92182 -14.67289 -14.38045 -14.19501 -14.08981 -13.61821 -13.36681 -13.28372 -13.21674 -13.04819 -12.86285 -12.79669 -12.62072 -12.50761 -12.30367 -12.22490 -12.16342 -12.00692 -11.93255 -11.62418 -11.49957 -11.46069 -11.26777 -11.18436 -10.91613 -10.59788 -10.58982 -10.38995 -9.89290 -8.63391 -7.89448 -5.41102 1.37068 1.40490 1.49194 1.67837 2.20509 2.45883 2.75724 2.92545 3.26337 3.43198 3.62624 3.71158 3.76213 3.81370 3.96412 3.99272 4.02152 4.10702 4.15672 4.17368 4.27116 4.33035 4.47688 4.55442 4.59544 4.64936 4.66223 4.67015 4.72682 4.77371 4.79587 4.88735 4.91811 4.97818 5.04474 5.05543 5.07348 5.11271 5.16371 5.17678 5.21265 5.23328 5.26637 5.36817 5.45101 5.50459 5.52673 5.60550 5.80770 6.20794 6.37248 6.64425 7.12337 7.36156 7.83599 8.33490 9.13540 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.011572 B = 0.004866 C = 0.004073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2419.048032 B = 5752.287117 C = 6873.147237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.080 0.920 4 C -0.116 4.116 5 C 0.136 3.864 6 N -0.609 5.609 7 C -0.266 4.266 8 H 0.062 0.938 9 C -0.044 4.044 10 N -0.923 5.923 11 Si 0.959 3.041 12 H -0.265 1.265 13 H -0.299 1.299 14 H -0.284 1.284 15 C 0.187 3.813 16 C 0.139 3.861 17 H 0.043 0.957 18 N -0.701 5.701 19 C 0.520 3.480 20 O -0.582 6.582 21 C -0.046 4.046 22 C -0.116 4.116 23 C -0.188 4.188 24 C -0.203 4.203 25 C -0.123 4.123 26 C 0.055 3.945 27 O -0.391 6.391 28 C 0.051 3.949 29 C -0.133 4.133 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.052 0.948 36 H 0.022 0.978 37 H 0.246 0.754 38 H 0.041 0.959 39 H 0.001 0.999 40 H 0.409 0.591 41 H 0.151 0.849 42 H 0.112 0.888 43 H 0.055 0.945 44 H 0.092 0.908 45 H 0.109 0.891 46 H 0.101 0.899 47 H 0.058 0.942 48 H 0.036 0.964 49 H 0.104 0.896 50 H 0.030 0.970 51 H 0.126 0.874 52 H 0.099 0.901 53 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.312 10.825 -4.996 20.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 H 0.098 0.902 4 C -0.156 4.156 5 C 0.011 3.989 6 N -0.333 5.333 7 C -0.397 4.397 8 H 0.080 0.920 9 C -0.241 4.241 10 N -0.568 5.568 11 Si 0.787 3.213 12 H -0.190 1.190 13 H -0.226 1.226 14 H -0.211 1.211 15 C 0.060 3.940 16 C 0.032 3.968 17 H 0.061 0.939 18 N -0.353 5.353 19 C 0.308 3.692 20 O -0.462 6.462 21 C -0.049 4.049 22 C -0.134 4.134 23 C -0.225 4.225 24 C -0.241 4.241 25 C -0.161 4.161 26 C -0.021 4.021 27 O -0.310 6.310 28 C -0.025 4.025 29 C -0.171 4.171 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.247 0.753 41 H 0.169 0.831 42 H 0.130 0.870 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.128 0.872 46 H 0.120 0.880 47 H 0.076 0.924 48 H 0.054 0.946 49 H 0.123 0.877 50 H 0.048 0.952 51 H 0.144 0.856 52 H 0.117 0.883 53 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.190 9.962 -5.194 19.706 hybrid contribution 1.740 -1.013 -0.005 2.013 sum -14.450 8.949 -5.198 17.773 Atomic orbital electron populations 1.21768 0.93000 1.01463 1.02923 1.21265 0.96936 0.99358 0.92892 0.90176 1.21969 0.95780 1.00039 0.97764 1.21169 0.93498 0.96146 0.88093 1.44198 1.48419 1.39645 1.01059 1.19456 1.07688 1.02976 1.09537 0.92016 1.25840 0.98598 0.99952 0.99676 1.70120 1.36709 1.31402 1.18601 0.85334 0.78581 0.80141 0.77231 1.18975 1.22598 1.21058 1.20744 0.89328 0.94884 0.89032 1.21501 0.95034 0.95594 0.84657 0.93862 1.45990 1.65086 1.14699 1.09519 1.20965 0.75742 0.86864 0.85630 1.90686 1.51778 1.17637 1.86092 1.20525 0.96918 0.95734 0.91696 1.22303 0.87248 1.00620 1.03233 1.22841 1.00365 0.98381 1.00877 1.23570 1.02671 1.02206 0.95605 1.21963 0.98779 0.97255 0.98125 1.22667 0.85473 0.93106 1.00897 1.87869 1.36392 1.51928 1.54843 1.22804 1.00566 0.90341 0.88824 1.22295 0.91413 0.97970 1.05411 0.94213 0.90349 0.91597 0.93529 0.88658 0.92892 0.95987 0.94448 0.94003 0.98070 0.75307 0.83107 0.86965 0.92612 0.88954 0.87243 0.88013 0.92371 0.94583 0.87746 0.95206 0.85634 0.88263 0.87162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.02 71.99 0.65 -2.29 16 2 C -0.09 -2.49 2.27 -10.77 -0.02 -2.52 16 3 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 4 C -0.12 -3.67 5.36 30.67 0.16 -3.50 16 5 C 0.14 5.55 6.52 86.36 0.56 6.11 16 6 N -0.61 -31.46 2.98 -699.10 -2.09 -33.54 16 7 C -0.27 -15.36 9.58 84.03 0.80 -14.55 16 8 H 0.06 3.50 7.85 -2.91 -0.02 3.48 16 9 C -0.04 -2.61 5.04 84.86 0.43 -2.18 16 10 N -0.92 -56.59 11.08 21.65 0.24 -56.35 16 11 Si 0.96 47.78 29.57 68.60 2.03 49.81 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.30 -15.25 7.11 99.48 0.71 -14.54 16 14 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 15 C 0.19 9.22 3.84 86.36 0.33 9.55 16 16 C 0.14 5.30 2.10 45.07 0.09 5.40 16 17 H 0.04 2.00 7.52 -2.39 -0.02 1.98 16 18 N -0.70 -21.59 2.42 -442.17 -1.07 -22.66 16 19 C 0.52 17.65 3.63 87.66 0.32 17.97 16 20 O -0.58 -26.32 13.83 -3.04 -0.04 -26.37 16 21 C -0.05 -1.11 0.53 -52.81 -0.03 -1.14 16 22 C -0.12 -2.62 5.13 -10.79 -0.06 -2.68 16 23 C -0.19 -5.60 9.54 30.59 0.29 -5.31 16 24 C -0.20 -5.95 9.39 30.59 0.29 -5.66 16 25 C -0.12 -3.16 4.37 30.69 0.13 -3.03 16 26 C 0.06 1.50 6.56 72.02 0.47 1.97 16 27 O -0.39 -9.78 10.77 -148.98 -1.60 -11.38 16 28 C 0.05 1.01 6.62 72.01 0.48 1.49 16 29 C -0.13 -2.22 4.79 30.68 0.15 -2.07 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.08 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.22 7.35 -2.39 -0.02 1.20 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 36 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 37 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 38 H 0.04 2.50 6.13 -2.39 -0.01 2.49 16 39 H 0.00 0.07 7.63 -2.38 -0.02 0.05 16 40 H 0.41 9.62 6.89 -92.71 -0.64 8.98 16 41 H 0.15 2.29 8.13 -2.39 -0.02 2.27 16 42 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 43 H 0.06 2.13 7.75 -2.39 -0.02 2.11 16 44 H 0.09 3.37 3.53 -2.39 -0.01 3.36 16 45 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 46 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 47 H 0.06 1.80 7.32 -2.39 -0.02 1.78 16 48 H 0.04 1.23 6.12 -2.39 -0.01 1.22 16 49 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 50 H 0.03 0.72 7.38 -2.38 -0.02 0.70 16 51 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 52 H 0.10 1.24 6.99 -2.39 -0.02 1.23 16 53 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -75.98 390.80 2.78 -73.20 By element: Atomic # 1 Polarization: 29.48 SS G_CDS: 0.26 Total: 29.73 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: 5.06 Total: -2.45 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -2.92 Total: -112.55 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -1.65 Total: -37.75 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.81 kcal Total: -75.98 2.78 -73.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967433557.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.876 kcal (2) G-P(sol) polarization free energy of solvation -75.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds