Wall clock time and date at job start Tue Mar 31 2020 21:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.45887 * 2 1 4 4 C 1.53037 * 109.46053 * 119.97201 * 2 1 3 5 5 C 1.53194 * 109.31104 * 181.38554 * 4 2 1 6 6 N 1.46926 * 108.77454 * 305.36242 * 5 4 2 7 7 C 1.36935 * 120.63420 * 233.63177 * 6 5 4 8 8 H 1.08001 * 120.00088 * 152.60968 * 7 6 5 9 9 C 1.38817 * 119.99782 * 332.60348 * 7 6 5 10 10 N 1.31618 * 119.99923 * 159.36242 * 9 7 6 11 11 Si 1.86801 * 120.00195 * 339.36341 * 9 7 6 12 12 H 1.48501 * 109.47054 * 92.89675 * 11 9 7 13 13 H 1.48497 * 109.47324 * 212.90179 * 11 9 7 14 14 H 1.48501 * 109.46722 * 332.89954 * 11 9 7 15 15 C 1.46925 * 118.73822 * 53.61351 * 6 5 4 16 16 C 1.53190 * 108.89356 * 306.31916 * 15 6 5 17 17 H 1.09004 * 109.49453 * 294.75209 * 16 15 6 18 18 N 1.46501 * 109.50123 * 174.65539 * 16 15 6 19 19 C 1.34785 * 119.99792 * 84.99643 * 18 16 15 20 20 O 1.21277 * 119.99898 * 0.02562 * 19 18 16 21 21 C 1.50699 * 119.99558 * 180.02562 * 19 18 16 22 22 C 1.53876 * 113.60170 * 279.17433 * 21 19 18 23 23 C 1.53477 * 86.88424 * 220.37180 * 22 21 19 24 24 C 1.53319 * 87.58594 * 25.11165 * 23 22 21 25 25 C 1.52829 * 113.69503 * 139.90269 * 23 22 21 26 26 C 1.53263 * 108.88008 * 184.07426 * 25 23 22 27 27 O 1.42894 * 109.33009 * 304.69138 * 26 25 23 28 28 C 1.42904 * 114.35896 * 62.99456 * 27 26 25 29 29 C 1.52829 * 113.56284 * 270.33678 * 23 22 21 30 30 H 1.08999 * 109.46907 * 300.02622 * 1 2 3 31 31 H 1.09004 * 109.47431 * 60.02293 * 1 2 3 32 32 H 1.08999 * 109.47154 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.49698 * 61.43697 * 4 2 1 34 34 H 1.08997 * 109.50033 * 301.33742 * 4 2 1 35 35 H 1.09002 * 109.58607 * 185.58112 * 5 4 2 36 36 H 1.08994 * 109.70423 * 65.22242 * 5 4 2 37 37 H 0.96999 * 119.99917 * 180.02562 * 10 9 7 38 38 H 1.09004 * 109.58551 * 66.17181 * 15 6 5 39 39 H 1.08997 * 109.59252 * 186.45483 * 15 6 5 40 40 H 0.96999 * 120.00073 * 264.99740 * 18 16 15 41 41 H 1.09000 * 112.84155 * 50.33863 * 21 19 18 42 42 H 1.09002 * 113.63362 * 334.85829 * 22 21 19 43 43 H 1.09000 * 113.63431 * 105.82866 * 22 21 19 44 44 H 1.09000 * 113.64154 * 220.37597 * 24 23 22 45 45 H 1.09003 * 113.71967 * 89.41355 * 24 23 22 46 46 H 1.08993 * 109.56766 * 303.89523 * 25 23 22 47 47 H 1.09002 * 109.56554 * 64.25178 * 25 23 22 48 48 H 1.08998 * 109.49349 * 184.73709 * 26 25 23 49 49 H 1.08998 * 109.51843 * 64.65938 * 26 25 23 50 50 H 1.09002 * 109.49110 * 177.05784 * 28 27 26 51 51 H 1.08999 * 109.52242 * 56.97914 * 28 27 26 52 52 H 1.08992 * 109.57709 * 295.67976 * 29 23 22 53 53 H 1.09003 * 109.56765 * 56.04458 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 3.5714 -0.6887 1.2641 6 7 4.0678 -1.2488 -0.0002 7 6 4.9757 -2.2740 -0.0004 8 1 5.0116 -2.9633 -0.8310 9 6 5.8499 -2.4270 1.0670 10 7 6.4261 -3.5903 1.2841 11 14 6.2086 -0.9821 2.1952 12 1 5.2793 -1.0156 3.3531 13 1 7.6089 -1.0695 2.6816 14 1 6.0225 0.2875 1.4478 15 6 3.5714 -0.6884 -1.2644 16 6 2.0398 -0.7209 -1.2538 17 1 1.6980 -1.7559 -1.2422 18 7 1.5282 -0.0497 -2.4513 19 6 1.4057 -0.7332 -3.6065 20 8 1.7186 -1.9039 -3.6545 21 6 0.8799 -0.0426 -4.8384 22 6 -0.6544 0.0696 -4.8743 23 6 -0.5601 -0.2639 -6.3694 24 6 0.7667 -0.9681 -6.0624 25 6 -1.6565 -1.2099 -6.8580 26 6 -1.3998 -1.5481 -8.3306 27 8 -1.3091 -0.3379 -9.0850 28 6 -0.2199 0.5088 -8.7121 29 6 -0.4076 0.9675 -7.2617 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5135 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6979 -1.7558 1.2381 34 1 1.6573 -0.2210 2.1398 35 1 3.9417 -1.2847 2.0982 36 1 3.9164 0.3400 1.3685 37 1 7.0366 -3.6974 2.0302 38 1 3.9143 0.3411 -1.3673 39 1 3.9437 -1.2826 -2.0988 40 1 1.2776 0.8866 -2.4128 41 1 1.3913 0.8970 -5.0476 42 1 -1.1623 -0.6954 -4.2871 43 1 -1.0238 1.0750 -4.6723 44 1 1.5374 -0.7952 -6.8137 45 1 0.6549 -2.0214 -5.8051 46 1 -1.6404 -2.1244 -6.2652 47 1 -2.6278 -0.7253 -6.7585 48 1 -2.2209 -2.1543 -8.7131 49 1 -0.4658 -2.1029 -8.4195 50 1 -0.1944 1.3788 -9.3683 51 1 0.7165 -0.0417 -8.8013 52 1 -1.3022 1.5856 -7.1871 53 1 0.4628 1.5422 -6.9450 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968545146.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:06 Heat of formation + Delta-G solvation = -76.195519 kcal Electronic energy + Delta-G solvation = -30583.071098 eV Core-core repulsion = 26647.260806 eV Total energy + Delta-G solvation = -3935.810293 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.01254 -40.66211 -39.34777 -37.92124 -36.24917 -34.53570 -33.43033 -32.34072 -32.01450 -30.79099 -29.21382 -26.97796 -26.47328 -25.48553 -24.67042 -24.14131 -22.93082 -22.82009 -21.37971 -20.66340 -19.17031 -18.82770 -18.22317 -17.38269 -17.07071 -16.93514 -16.81007 -16.48237 -16.03386 -15.74743 -15.56745 -15.29215 -15.19944 -14.98797 -14.75760 -14.69006 -14.42904 -14.17485 -13.79297 -13.61253 -13.51859 -13.31278 -13.11608 -12.78964 -12.71556 -12.62944 -12.52433 -12.49943 -12.22828 -12.19837 -12.08390 -11.79759 -11.61612 -11.44871 -11.38371 -11.30836 -11.28247 -11.00539 -10.86523 -10.60517 -10.26939 -10.10051 -8.95098 -8.20447 -5.54475 1.27774 1.39585 1.50178 1.67687 2.20527 2.38745 2.99969 3.02320 3.32749 3.39459 3.53125 3.59276 3.69703 3.71142 3.90405 3.99031 4.02052 4.13329 4.19112 4.27733 4.31414 4.40436 4.42516 4.50623 4.52668 4.56229 4.56734 4.74834 4.78963 4.80836 4.82010 4.83309 4.84147 4.93432 4.93944 4.96932 4.99825 5.06230 5.09997 5.13365 5.14116 5.15560 5.21025 5.36538 5.38639 5.44043 5.51198 5.60629 5.81400 6.07448 6.30783 6.66292 6.86922 7.37911 7.57067 7.94760 9.00086 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.021972 B = 0.002498 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.022537 B =11208.464574 C =11809.462746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 H 0.094 0.906 4 C -0.121 4.121 5 C 0.114 3.886 6 N -0.617 5.617 7 C -0.257 4.257 8 H 0.033 0.967 9 C -0.038 4.038 10 N -0.960 5.960 11 Si 0.960 3.040 12 H -0.266 1.266 13 H -0.310 1.310 14 H -0.256 1.256 15 C 0.145 3.855 16 C 0.146 3.854 17 H 0.046 0.954 18 N -0.703 5.703 19 C 0.514 3.486 20 O -0.593 6.593 21 C -0.127 4.127 22 C -0.100 4.100 23 C -0.075 4.075 24 C -0.116 4.116 25 C -0.137 4.137 26 C 0.059 3.941 27 O -0.403 6.403 28 C 0.054 3.946 29 C -0.125 4.125 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.049 0.951 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.043 0.957 39 H 0.026 0.974 40 H 0.417 0.583 41 H 0.142 0.858 42 H 0.074 0.926 43 H 0.105 0.895 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.101 0.899 49 H 0.046 0.954 50 H 0.108 0.892 51 H 0.048 0.952 52 H 0.084 0.916 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.707 17.178 -14.553 30.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.102 4.102 3 H 0.112 0.888 4 C -0.161 4.161 5 C -0.010 4.010 6 N -0.342 5.342 7 C -0.386 4.386 8 H 0.051 0.949 9 C -0.232 4.232 10 N -0.606 5.606 11 Si 0.787 3.213 12 H -0.193 1.193 13 H -0.239 1.239 14 H -0.180 1.180 15 C 0.019 3.981 16 C 0.039 3.961 17 H 0.065 0.935 18 N -0.355 5.355 19 C 0.302 3.698 20 O -0.472 6.472 21 C -0.148 4.148 22 C -0.137 4.137 23 C -0.075 4.075 24 C -0.154 4.154 25 C -0.175 4.175 26 C -0.017 4.017 27 O -0.322 6.322 28 C -0.023 4.023 29 C -0.163 4.163 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.064 0.936 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.045 0.955 40 H 0.254 0.746 41 H 0.159 0.841 42 H 0.092 0.908 43 H 0.124 0.876 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.119 0.881 49 H 0.064 0.936 50 H 0.126 0.874 51 H 0.066 0.934 52 H 0.103 0.897 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.514 16.319 -14.653 30.031 hybrid contribution 1.228 -0.433 0.875 1.569 sum -19.286 15.886 -13.778 28.534 Atomic orbital electron populations 1.21766 0.92777 1.01510 1.03196 1.21314 0.97173 0.99720 0.91952 0.88778 1.22004 0.94873 1.00481 0.98728 1.21548 0.94832 0.96851 0.87780 1.44349 1.48397 1.39965 1.01492 1.18758 1.10913 1.02985 1.05965 0.94915 1.26018 0.97351 0.99377 1.00496 1.70002 1.34062 1.24376 1.32133 0.85714 0.75726 0.80927 0.78885 1.19255 1.23889 1.18003 1.21279 0.93244 0.96427 0.87179 1.21251 0.93348 0.96277 0.85248 0.93528 1.45852 1.65390 1.15129 1.09080 1.21281 0.76456 0.86588 0.85516 1.90730 1.51619 1.19325 1.85572 1.22868 0.99195 1.01231 0.91482 1.22875 0.91697 1.03751 0.95400 1.21514 0.94577 0.96274 0.95171 1.22886 0.97873 0.98639 0.95989 1.22083 0.99125 0.99617 0.96638 1.22645 1.01769 0.86338 0.90995 1.87862 1.51257 1.32737 1.60325 1.22774 0.88991 0.94507 0.95995 1.21976 1.04131 0.95932 0.94224 0.90565 0.90877 0.94395 0.93642 0.88489 0.93271 0.93710 0.92773 0.93908 0.95505 0.74564 0.84083 0.90761 0.87646 0.90855 0.91410 0.91271 0.90242 0.88092 0.93610 0.87399 0.93353 0.89744 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.03 71.98 0.65 -1.94 16 2 C -0.08 -2.11 2.28 -10.66 -0.02 -2.14 16 3 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 4 C -0.12 -3.85 5.36 30.67 0.16 -3.69 16 5 C 0.11 4.73 4.21 86.36 0.36 5.10 16 6 N -0.62 -30.51 2.77 -699.10 -1.94 -32.44 16 7 C -0.26 -15.67 10.03 84.03 0.84 -14.82 16 8 H 0.03 2.28 8.06 -2.91 -0.02 2.26 16 9 C -0.04 -2.31 5.23 84.86 0.44 -1.87 16 10 N -0.96 -62.95 13.97 21.65 0.30 -62.65 16 11 Si 0.96 47.15 24.34 68.60 1.67 48.82 16 12 H -0.27 -12.06 6.62 99.48 0.66 -11.40 16 13 H -0.31 -15.45 7.11 99.48 0.71 -14.75 16 14 H -0.26 -11.79 6.64 99.48 0.66 -11.13 16 15 C 0.15 6.07 6.08 86.36 0.53 6.60 16 16 C 0.15 4.79 2.08 45.17 0.09 4.89 16 17 H 0.05 1.95 7.58 -2.39 -0.02 1.93 16 18 N -0.70 -16.88 4.39 -441.66 -1.94 -18.82 16 19 C 0.51 14.22 7.32 87.66 0.64 14.86 16 20 O -0.59 -23.92 15.57 -3.02 -0.05 -23.97 16 21 C -0.13 -2.17 3.79 -10.95 -0.04 -2.21 16 22 C -0.10 -1.28 6.80 31.05 0.21 -1.07 16 23 C -0.08 -1.01 0.77 -52.03 -0.04 -1.05 16 24 C -0.12 -2.22 6.35 30.99 0.20 -2.02 16 25 C -0.14 -1.96 5.34 30.63 0.16 -1.79 16 26 C 0.06 0.89 6.78 72.07 0.49 1.38 16 27 O -0.40 -6.93 10.72 -148.98 -1.60 -8.53 16 28 C 0.05 0.67 6.78 72.07 0.49 1.16 16 29 C -0.13 -1.26 5.23 30.63 0.16 -1.10 16 30 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.09 7.37 -2.38 -0.02 1.07 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.05 2.28 4.50 -2.39 -0.01 2.27 16 36 H 0.05 1.71 7.07 -2.39 -0.02 1.69 16 37 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 38 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.03 1.30 7.93 -2.39 -0.02 1.28 16 40 H 0.42 6.31 8.32 -92.71 -0.77 5.54 16 41 H 0.14 1.59 7.65 -2.39 -0.02 1.58 16 42 H 0.07 1.19 8.05 -2.39 -0.02 1.18 16 43 H 0.11 0.79 8.09 -2.39 -0.02 0.78 16 44 H 0.07 1.33 7.63 -2.39 -0.02 1.31 16 45 H 0.07 1.73 7.33 -2.39 -0.02 1.71 16 46 H 0.07 1.09 8.04 -2.39 -0.02 1.07 16 47 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.05 0.73 8.12 -2.39 -0.02 0.71 16 50 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.05 0.63 7.68 -2.39 -0.02 0.61 16 52 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.09 0.67 7.35 -2.39 -0.02 0.65 16 Total: -1.00 -81.77 396.09 1.80 -79.97 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.02 Total: 17.34 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 5.33 Total: 0.27 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -3.57 Total: -113.91 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -1.64 Total: -32.50 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.67 Total: 48.82 kcal Total: -81.77 1.80 -79.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968545146.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.776 kcal (2) G-P(sol) polarization free energy of solvation -81.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds